BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0198.0009.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768532.1| ribokinase [Bradyrhizobium japonicum USDA 110] ... 466 e-129 ref|YP_001863458.1| cyclic nucleotide-binding protein [Burkholde... 324 1e-86 ref|ZP_01618666.1| ribokinase [Lyngbya sp. PCC 8106] >gi|1194580... 190 3e-46 ref|ZP_03611982.1| ribokinase [Actinobacillus minor 202] >gi|223... 189 3e-46 ref|ZP_03271831.1| ribokinase [Arthrospira maxima CS-328] >gi|20... 186 3e-45 >ref|NP_768532.1| ribokinase [Bradyrhizobium japonicum USDA 110] gb|AAG60871.1|AF322012_176 ID402 [Bradyrhizobium japonicum] dbj|BAC47157.1| ribokinase [Bradyrhizobium japonicum USDA 110] Length = 313 Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust. Identities = 230/307 (74%), Positives = 263/307 (85%), Gaps = 7/307 (2%) Query: 1 MFFGTTNLDLCFNVERLPTPGESLIGALTRHPGG-------XAAQLGLKPLFYTRLGDDD 53 MFFGTTNLDLCFNVERLPTPGESL+G+L ++ GG AA+LGL+P FYTRLGDDD Sbjct: 7 MFFGTTNLDLCFNVERLPTPGESLMGSLKQNAGGKGANQAVAAARLGLRPSFYTRLGDDD 66 Query: 54 AGKSLLKSLTDAGVCTDAITVCAGEVSGLAMVMVADDGTNMIVIEPGANSKVAPDMIESA 113 AG+SLL++L +AGV DAI VC GE+SG A+V+V DDG+NMIVI+PGAN+ V P M+E A Sbjct: 67 AGRSLLQALREAGVRLDAIEVCPGEISGSALVLVGDDGSNMIVIDPGANANVTPSMVEKA 126 Query: 114 ANFIERDTIVVAEMGMPIPALNRLFEMKREKGFELIFNPAPVRPGLPSAAWRSVDFVTPN 173 A FIERD IVVAEMGMP+PALN LF +K K F+LIFNPAPVR GL AAWRSVDFVTPN Sbjct: 127 AEFIERDAIVVAEMGMPVPALNHLFALKSVKEFDLIFNPAPVRAGLSPAAWRSVDFVTPN 186 Query: 174 QTETFELTGLEVYDFESAARAAEKLLDLGPGAALITLGAQGAYYADRTGSFSLRAFPVKV 233 QTE FELTG+EV+DF+ AA AA KLLDLGP AALITLGAQGAYYAD + +F+LRAFPVKV Sbjct: 187 QTEAFELTGVEVHDFDGAAHAAGKLLDLGPKAALITLGAQGAYYADASATFALRAFPVKV 246 Query: 234 VDTTAAGDAFNGAFAASLAQRLPLKEAVRKALAVAALCVTRRGAQSSMPTAQAVDEFLQS 293 VDTTAAGDAFNGAFAASLA RLP++EA++KALAVAAL VTRRGAQ SMP++ AVDEFL S Sbjct: 247 VDTTAAGDAFNGAFAASLAHRLPIREAIKKALAVAALYVTRRGAQRSMPSSWAVDEFLNS 306 Query: 294 QTILELE 300 Q+ILELE Sbjct: 307 QSILELE 313 >ref|YP_001863458.1| cyclic nucleotide-binding protein [Burkholderia phymatum STM815] gb|ACC76408.1| cyclic nucleotide-binding protein [Burkholderia phymatum STM815] Length = 314 Score = 324 bits (830), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 165/305 (54%), Positives = 214/305 (70%), Gaps = 7/305 (2%) Query: 1 MFFGTTNLDLCFNVERLPTPGESLIGALTRHPGGXAAQ-------LGLKPLFYTRLGDDD 53 MFFGTTNLDLCF VE LP GES++G L R+ GG A LG P F+TR+G D+ Sbjct: 9 MFFGTTNLDLCFEVEHLPAAGESVMGTLARYAGGKGANQAVAAARLGAAPRFFTRIGGDE 68 Query: 54 AGKSLLKSLTDAGVCTDAITVCAGEVSGLAMVMVADDGTNMIVIEPGANSKVAPDMIESA 113 AG LL+SL +AGV DA+ + +GE SG A+V V +DG+N+++I+PGAN + I Sbjct: 69 AGDFLLRSLEEAGVIVDAVEIASGEPSGSALVAVGNDGSNVVIIDPGANRHITVASISHG 128 Query: 114 ANFIERDTIVVAEMGMPIPALNRLFEMKREKGFELIFNPAPVRPGLPSAAWRSVDFVTPN 173 A+FI +DT+VVAEMG+P+PAL LF +KRE F L+FNPAPV+ G+ AWR+VD VTPN Sbjct: 129 ASFISQDTVVVAEMGLPLPALEYLFSLKREVPFTLVFNPAPVQSGMSRDAWRAVDIVTPN 188 Query: 174 QTETFELTGLEVYDFESAARAAEKLLDLGPGAALITLGAQGAYYADRTGSFSLRAFPVKV 233 E ELTG+ V D ++A AA LL LGP A +ITLG QG++YAD SF + AFPV+ Sbjct: 189 AAEASELTGIRVVDDKTARSAATALLGLGPRAVVITLGEQGSWYADIEQSFGMPAFPVQA 248 Query: 234 VDTTAAGDAFNGAFAASLAQRLPLKEAVRKALAVAALCVTRRGAQSSMPTAQAVDEFLQS 293 VDTT AGDAF G AA++A P++ A+ +A+AVAA+ VTR GAQ +MP+A+ VD+FLQ Sbjct: 249 VDTTGAGDAFTGGLAAAIAMGHPIRSAICRAMAVAAISVTRHGAQIAMPSAREVDDFLQP 308 Query: 294 QTILE 298 LE Sbjct: 309 IMSLE 313 >ref|ZP_01618666.1| ribokinase [Lyngbya sp. PCC 8106] gb|EAW39141.1| ribokinase [Lyngbya sp. PCC 8106] Length = 305 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 168/302 (55%), Gaps = 8/302 (2%) Query: 1 MFFGTTNLDLCFNVERLPTPGESLIG-ALTRHPGGX-------AAQLGLKPLFYTRLGDD 52 + FG+ N+DL RLP+PGE+L G PGG AA+LG R+G+D Sbjct: 4 IIFGSINMDLVVQTPRLPSPGETLQGDHFFTAPGGKGANQAVAAARLGALTYLVGRVGED 63 Query: 53 DAGKSLLKSLTDAGVCTDAITVCAGEVSGLAMVMVADDGTNMIVIEPGANSKVAPDMIES 112 G+ LL L + GV T+ + V + SG+AM+ V + N I+I PGAN +V ++ Sbjct: 64 SFGQELLAHLNETGVQTEWVKVDSQTSSGVAMIAVDQNSENTIMIIPGANGRVEASDVDR 123 Query: 113 AANFIERDTIVVAEMGMPIPALNRLFEMKREKGFELIFNPAPVRPGLPSAAWRSVDFVTP 172 N + ++ ++ +P+PA+ + ++ G ++I +PAP LP + +D +TP Sbjct: 124 LKNLFSHSSALLLQLEVPLPAIIEAAKAAKQAGVKVILDPAPAPESLPDELYPLIDIITP 183 Query: 173 NQTETFELTGLEVYDFESAARAAEKLLDLGPGAALITLGAQGAYYADRTGSFSLRAFPVK 232 N+TE +LTG ++ + + ++ E ++ G ++ LGA+G + ++ G F + AFPV+ Sbjct: 184 NETEAKQLTGFDLSEENNWIKSTEFFINRGVKTVVLKLGARGVFCLNKGGHFRVEAFPVQ 243 Query: 233 VVDTTAAGDAFNGAFAASLAQRLPLKEAVRKALAVAALCVTRRGAQSSMPTAQAVDEFLQ 292 +DT AAGDAFNGA AA+ L L+EAV A AL T+ GAQ S+P + + FL Sbjct: 244 AIDTVAAGDAFNGAMAAAFEAGLSLREAVIWGTAAGALATTKPGAQPSLPDRETFEAFLH 303 Query: 293 SQ 294 S Sbjct: 304 SH 305 >ref|ZP_03611982.1| ribokinase [Actinobacillus minor 202] gb|EEF15837.1| ribokinase [Actinobacillus minor 202] Length = 310 Score = 189 bits (481), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 173/302 (57%), Gaps = 9/302 (2%) Query: 3 FGTTNLDLCFNVERLPTPGESLIGALTRHPGG--------XAAQLGLKPLFYTRLGDDDA 54 G+ N+D V P GE+L G + G AA++G K F +GDD Sbjct: 8 LGSINVDHVIRVPYFPKAGETLTGYGYQIAYGGKGANQAVAAARVGAKVCFIGAIGDDQI 67 Query: 55 GKSLLKSLTDAGVCTDAITVCAGEVSGLAMVMVADDGTNMIVIEPGANSKVAPDMIESAA 114 G+++ ++ G+ T AI+V + +GLAM+ VAD G N IVI GAN+ ++ ++E Sbjct: 68 GQTMKQAFEQDGIDTSAISVIPNQSTGLAMIQVADSGENSIVISAGANADLSESLVEQHK 127 Query: 115 NFIERDTIVVAEMGMPIPALNRLFEMKREKGFELIFNPAPVRPGLPSAAWRSVDFVTPNQ 174 + IE+ I++ ++ P+ A+ + + G +++ NPAP +P LP + +D +TPN+ Sbjct: 128 SQIEQADILLMQLESPLQAVTLATKFAKSAGVKVVLNPAPAQP-LPDSLLSHIDIITPNE 186 Query: 175 TETFELTGLEVYDFESAARAAEKLLDLGPGAALITLGAQGAYYADRTGSFSLRAFPVKVV 234 TE LTG++V D ++A AA LG LITLG++G YY+++ + F V V Sbjct: 187 TEAEILTGVKVTDEQTAIVAANHFHQLGIEVVLITLGSKGVYYSEKGQGEIIPGFRVDAV 246 Query: 235 DTTAAGDAFNGAFAASLAQRLPLKEAVRKALAVAALCVTRRGAQSSMPTAQAVDEFLQSQ 294 DT AAGD FNGAF +L + K+A+R A A AA+ VTR GAQ+++P + V++FL + Sbjct: 247 DTIAAGDTFNGAFVTALLEGKSAKDAIRFAHAAAAISVTRMGAQTAIPNRKEVEQFLNNS 306 Query: 295 TI 296 ++ Sbjct: 307 SV 308 >ref|ZP_03271831.1| ribokinase [Arthrospira maxima CS-328] gb|EDZ96725.1| ribokinase [Arthrospira maxima CS-328] Length = 312 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 111/299 (37%), Positives = 163/299 (54%), Gaps = 8/299 (2%) Query: 1 MFFGTTNLDLCFNVERLPTPGESLIG-ALTRHPGG-------XAAQLGLKPLFYTRLGDD 52 + FG+ N+DL RLP PGE+L G GG A++LG K R+G D Sbjct: 4 LVFGSINMDLVVQTPRLPQPGETLTGYNFLSVAGGKGANQAVAASRLGAKTEMVGRVGGD 63 Query: 53 DAGKSLLKSLTDAGVCTDAITVCAGEVSGLAMVMVADDGTNMIVIEPGANSKVAPDMIES 112 + LL+ L V + + SGLA + V ++G N I++ PGAN V P+ ++ Sbjct: 64 AFAQELLEGLKANRVGCEGVLRDNCTHSGLATIAVDNNGENQIIVIPGANGCVGPEDVQR 123 Query: 113 AANFIERDTIVVAEMGMPIPALNRLFEMKREKGFELIFNPAPVRPGLPSAAWRSVDFVTP 172 E T ++ ++ +P+ A+ + G +I +PAP P + VD +TP Sbjct: 124 LEPLWEEATSLLLQLEIPLKAVEAAIHAAKNAGVRVILDPAPAPDVFPQQLYPLVDIITP 183 Query: 173 NQTETFELTGLEVYDFESAARAAEKLLDLGPGAALITLGAQGAYYADRTGSFSLRAFPVK 232 N+TE +L G V + E+A +AA+ LLD G A+I LG++G ++A ++ SF + AF V Sbjct: 184 NETEASQLVGFAVNNVETAQKAADTLLDFGVKTAVIKLGSKGVFWATKSESFWVPAFAVN 243 Query: 233 VVDTTAAGDAFNGAFAASLAQRLPLKEAVRKALAVAALCVTRRGAQSSMPTAQAVDEFL 291 VDT AAGDAFNG AA+L + LKEA+ A AL T+ GAQSS+P QA+D+ L Sbjct: 244 AVDTVAAGDAFNGGMAAALDEGRSLKEAILWGAATGALSTTQVGAQSSLPDRQALDDVL 302