BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0198.0005.p (541 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAH04371.1| NodU carbamoyl transferase [Sinorhizobium sp. BR... 650 0.0 sp|Q53515.1|NODU_RHITR RecName: Full=Nodulation protein U >gi|99... 631 e-179 ref|YP_001863651.1| carbamoyltransferase [Burkholderia phymatum ... 629 e-178 ref|NP_768669.1| 6-O-carbamoyl transferase [Bradyrhizobium japon... 627 e-177 ref|NP_443985.1| nodulation protein NodU [Sinorhizobium fredii N... 627 e-177 >emb|CAH04371.1| NodU carbamoyl transferase [Sinorhizobium sp. BR816] Length = 569 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/449 (71%), Positives = 361/449 (80%), Gaps = 19/449 (4%) Query: 71 ATWLASPFAGAGQPAFCLVWDGGTFPRLYHVERGGAARFIECLFPVIGHVYAAAALHYGP 130 + + SPFA GQPAFCLVWDG FPRLY V+ G ARF+ECLFP+IG YAAA ++GP Sbjct: 130 SAYCTSPFAKTGQPAFCLVWDGCIFPRLYFVD-GQGARFLECLFPMIGQAYAAAGHYFGP 188 Query: 131 YKRATRANWDLSEPGKVDPGGAGKLNLGVAGKLMAYIALGSVNEDIVAIFQELYKERFAA 190 YK+A+R WDL GVAGKLMAYIALGSV+EDIV +FQELY+ERFAA Sbjct: 189 YKKASRGGWDL----------------GVAGKLMAYIALGSVDEDIVTLFQELYEERFAA 232 Query: 191 DTKRGS-YRTDVKSMELELTTIHDFFDASALRLKAKAPEDVLASFHCFLERLLVHEMARA 249 DT+ S YR ++ E L +HDFF+AS LRL+AKAP DVLASFH FLERLLV E+ A Sbjct: 233 DTELASHYRANINDAESSLAAVHDFFEASVLRLEAKAPADVLASFHLFLERLLVQEVTNA 292 Query: 250 LQRQSRLAALNLCIAGGCGLNIKWNSALRAAGLFDAVWVPPFPNDSGSAIGAACCAMVAE 309 L+R S NLCIAGGC LNIKWNSALR GLFDAVWVPPFPNDSGSAIGAACCAMVA+ Sbjct: 293 LRRHSFPGPQNLCIAGGCCLNIKWNSALRETGLFDAVWVPPFPNDSGSAIGAACCAMVAQ 352 Query: 310 KGLAPLQWSVYSGPALQRSDAPLEWDALPCSMHELATLLASNKPVIFLTGRAELGPRALG 369 +G L+WSVYSGP+LQ P W A CSM ELAT+LA NKPV+FL+GRAELGPR+LG Sbjct: 353 QGFVSLEWSVYSGPSLQIGHVPPGWKATLCSMPELATILAGNKPVVFLSGRAELGPRSLG 412 Query: 370 SRSILAAATSSGMKDYLNDIKHREHFRPVAPICLEDRAPEIFSPGTPDPYMLFDHQTRAE 429 RSILAAATS GMKD+LN++K REHFRPVAPICLEDRAP+IFSPGTPDPYMLFDHQTR E Sbjct: 413 GRSILAAATSPGMKDFLNEVKFREHFRPVAPICLEDRAPDIFSPGTPDPYMLFDHQTRME 472 Query: 430 WRDRIPAVVHLDGSARLQTICRTSQHKVAELLVEYEAITGIPLLCNTSANNNGRGFFPHL 489 W+D+IPAVVHLDGSARLQTI R SQH+VAELLVEYE +TGIPLLCNTSAN +GRGFFP Sbjct: 473 WQDKIPAVVHLDGSARLQTISRHSQHEVAELLVEYEKLTGIPLLCNTSANCHGRGFFPDA 532 Query: 490 AAACKWGRVEHVWCDGMLWRKTPQANDGT 518 AAAC+WGRVEH+WCDG+L+ KT QA + T Sbjct: 533 AAACEWGRVEHIWCDGLLFTKT-QATEQT 560 >sp|Q53515.1|NODU_RHITR RecName: Full=Nodulation protein U gb|AAB34511.1| NodU [Rhizobium tropici] Length = 575 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 308/452 (68%), Positives = 355/452 (78%), Gaps = 18/452 (3%) Query: 71 ATWLASPFAGAGQPAFCLVWDGGTFPRLYHVERGGAARFIECLFPVIGHVYAAAALHYGP 130 + + SPFA AG+ AFCLVW G FPRLYHV+ G ARF+E LFP+IG YAAA ++GP Sbjct: 130 SAYCTSPFAKAGEAAFCLVWGGCIFPRLYHVD-GHGARFLESLFPMIGQAYAAAGHYFGP 188 Query: 131 YKRATRANWDLSEPGKVDPGGAGKLNLGVAGKLMAYIALGSVNEDIVAIFQELYKERFAA 190 YK+ +RA WDL GVAGKLMAYIAL S++EDIVA+F+ELY+E F+ Sbjct: 189 YKQPSRAGWDL----------------GVAGKLMAYIALSSIDEDIVAVFEELYEEHFSG 232 Query: 191 DTKRGS-YRTDVKSMELELTTIHDFFDASALRLKAKAPEDVLASFHCFLERLLVHEMARA 249 D +R YR ++ E L +HDFFDAS +RL+ KAPE+VLASFH FLE LLV EMA A Sbjct: 233 DAERACRYRANINDAESSLIAVHDFFDASVVRLEDKAPENVLASFHSFLELLLVREMALA 292 Query: 250 LQRQSRLAALNLCIAGGCGLNIKWNSALRAAGLFDAVWVPPFPNDSGSAIGAACCAMVAE 309 +QR S NLCIAGGCGLNIKWNSALR GLFDAVWVPPFPNDSGSAIGAAC AM A Sbjct: 293 MQRHSLPGPRNLCIAGGCGLNIKWNSALRETGLFDAVWVPPFPNDSGSAIGAACSAMAAH 352 Query: 310 KGLAPLQWSVYSGPALQRSDAPLEWDALPCSMHELATLLASNKPVIFLTGRAELGPRALG 369 +G PL+WSVYSGPAL+ DAP W+A PCS+ ELAT+LASNKPV+FL GRAELGPRALG Sbjct: 353 EGFVPLEWSVYSGPALKNGDAPPGWEAAPCSILELATILASNKPVVFLAGRAELGPRALG 412 Query: 370 SRSILAAATSSGMKDYLNDIKHREHFRPVAPICLEDRAPEIFSPGTPDPYMLFDHQTRAE 429 RSILAAATS MKDYLN++K REHFRPVAPICLED AP+IFSPGTPDPYMLFDHQTR E Sbjct: 413 GRSILAAATSPQMKDYLNEVKFREHFRPVAPICLEDLAPDIFSPGTPDPYMLFDHQTRPE 472 Query: 430 WRDRIPAVVHLDGSARLQTICRTSQHKVAELLVEYEAITGIPLLCNTSANNNGRGFFPHL 489 W+D+IPAVVHLDGSARLQTI R+S+H V ELL+EYE +TGIPLLCNTSAN +GRGFFP Sbjct: 473 WKDKIPAVVHLDGSARLQTISRSSEHAVTELLIEYEKLTGIPLLCNTSANLHGRGFFPDA 532 Query: 490 AAACKWGRVEHVWCDGMLWRKTPQANDGTGGV 521 AAAC+WGR++HVWC+G+L+ K A GV Sbjct: 533 AAACEWGRIDHVWCNGVLFTKERVAELAPVGV 564 >ref|YP_001863651.1| carbamoyltransferase [Burkholderia phymatum STM815] gb|ACC76601.1| Carbamoyltransferase [Burkholderia phymatum STM815] Length = 572 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 304/441 (68%), Positives = 347/441 (78%), Gaps = 18/441 (4%) Query: 71 ATWLASPFAGAGQPAFCLVWDGGTFPRLYHVERGGAARFIECLFPVIGHVYAAAALHYGP 130 + + SPFA + QPAFCLVWDGG PRLYHV+R GA R ++CLFPVIG +YAAA H+GP Sbjct: 130 SAYCTSPFARSEQPAFCLVWDGGMVPRLYHVQRHGA-RLVDCLFPVIGQIYAAAGHHFGP 188 Query: 131 YKRATRANWDLSEPGKVDPGGAGKLNLGVAGKLMAYIALGSVNEDIVAIFQELYKERFAA 190 YK+A A WDL GVAGKLMAYIALGS++EDIV F LY+ERFA Sbjct: 189 YKKADGAEWDL----------------GVAGKLMAYIALGSLDEDIVTEFHRLYQERFAG 232 Query: 191 DTKRG-SYRTDVKSMELELTTIHDFFDASALRLKAKAPEDVLASFHCFLERLLVHEMARA 249 DT+ +YR +V E L + DFF+AS +LK K EDVL SFH FLERLLVHEM A Sbjct: 233 DTEIARNYRQNVHIPETSLAAVRDFFEASLPQLKTKPHEDVLVSFHVFLERLLVHEMGMA 292 Query: 250 LQRQSRLAALNLCIAGGCGLNIKWNSALRAAGLFDAVWVPPFPNDSGSAIGAACCAMVAE 309 LQR S NLCI+GGC LNIKWNSALRA+GLFDA+WVPPFPNDSGSAIGAACCAM A+ Sbjct: 293 LQRHSIPGPRNLCISGGCALNIKWNSALRASGLFDAIWVPPFPNDSGSAIGAACCAMAAD 352 Query: 310 KGLAPLQWSVYSGPALQRSDAPLEWDALPCSMHELATLLASNKPVIFLTGRAELGPRALG 369 KG PL+WSVYSG A++ D P W A PCS+ ELA +LA N+PV+FL GRAELGPRALG Sbjct: 353 KGFVPLEWSVYSGAAVKTGDVPAGWTASPCSIAELARILADNEPVVFLAGRAELGPRALG 412 Query: 370 SRSILAAATSSGMKDYLNDIKHREHFRPVAPICLEDRAPEIFSPGTPDPYMLFDHQTRAE 429 +RSILAAATS MK LNDIKHREHFRPVAPICLEDRAP +F PGTPDPYMLFDH TRAE Sbjct: 413 ARSILAAATSPAMKTILNDIKHREHFRPVAPICLEDRAPTVFCPGTPDPYMLFDHHTRAE 472 Query: 430 WRDRIPAVVHLDGSARLQTICRTSQHKVAELLVEYEAITGIPLLCNTSANNNGRGFFPHL 489 W+D++PAVVHLDGSARLQTI RTS+H VA+LL+EYE +TG+PLLCNTSAN++GRGFFP Sbjct: 473 WQDKVPAVVHLDGSARLQTIARTSEHPVAQLLIEYEKLTGLPLLCNTSANHHGRGFFPDA 532 Query: 490 AAACKWGRVEHVWCDGMLWRK 510 A+ACKWGRVEHVWCDG+L K Sbjct: 533 ASACKWGRVEHVWCDGLLLSK 553 >ref|NP_768669.1| 6-O-carbamoyl transferase [Bradyrhizobium japonicum USDA 110] sp|P26027.1|NODU_BRAJA RecName: Full=Nodulation protein U gb|AAG61000.1|AF322013_119 NodU [Bradyrhizobium japonicum] gb|AAA26228.1| nodU gene product [Bradyrhizobium japonicum] dbj|BAC47294.1| 6-O-carbamoyl transferase [Bradyrhizobium japonicum USDA 110] Length = 569 Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust. Identities = 310/443 (69%), Positives = 350/443 (79%), Gaps = 19/443 (4%) Query: 71 ATWLASPFAGAGQPAFCLVWDGGTFPRLYHVERGGAARFIECLFPVIGHVYAAAALHYGP 130 + + SPFA AG+PA CLVWDG FPRLY+VE GA R I LFP+IGH YAAA LH+GP Sbjct: 130 SAYSTSPFASAGKPALCLVWDGCIFPRLYYVEPQGA-RLIGSLFPMIGHAYAAAGLHFGP 188 Query: 131 YKRATRANWDLSEPGKVDPGGAGKLNLGVAGKLMAYIALGSVNEDIVAIFQELYKERFAA 190 Y++ R++WDL G+AGKLMAYI LGSV+E IV +FQ LY+ R AA Sbjct: 189 YRQPNRSSWDL----------------GIAGKLMAYIELGSVDESIVEVFQGLYETRSAA 232 Query: 191 DTKRGS-YRTDVKSMELELTTIHDFFDASALRLKAKAPEDVLASFHCFLERLLVHEMARA 249 DT++ YR ++ + E L IHDFF++SALRLKAK EDVLASFH FLERLLV E+A Sbjct: 233 DTEQARRYRENINNAEASLAVIHDFFESSALRLKAKRAEDVLASFHVFLERLLVKEIAMV 292 Query: 250 LQRQSRL-AALNLCIAGGCGLNIKWNSALRAAGLFDAVWVPPFPNDSGSAIGAACCAMVA 308 L R S L A NLCIAGGCGLNIKWNSALRA GLFD VWVPPFPNDSGSAIGAAC AM A Sbjct: 293 LLRHSSLPGARNLCIAGGCGLNIKWNSALRATGLFDDVWVPPFPNDSGSAIGAACGAMAA 352 Query: 309 EKGLAPLQWSVYSGPALQRSDAPLEWDALPCSMHELATLLASNKPVIFLTGRAELGPRAL 368 + G PL+WSVYSGPALQ S+ P +W+A PCS+ ELA++LA NKPVIFL+G A LGPRAL Sbjct: 353 QDGFEPLEWSVYSGPALQESEVPPDWEAAPCSLPELASILADNKPVIFLSGCAGLGPRAL 412 Query: 369 GSRSILAAATSSGMKDYLNDIKHREHFRPVAPICLEDRAPEIFSPGTPDPYMLFDHQTRA 428 G RSILAA TS MKD+LNDIK REHFRPV PICLEDRAPEIFSPGTPDPYMLFDHQTRA Sbjct: 413 GGRSILAAPTSPEMKDHLNDIKRREHFRPVVPICLEDRAPEIFSPGTPDPYMLFDHQTRA 472 Query: 429 EWRDRIPAVVHLDGSARLQTICRTSQHKVAELLVEYEAITGIPLLCNTSANNNGRGFFPH 488 WRD+IPAVVHLDGSARLQTI R S HK+A LL+E+E +TGIPLLC TSAN +GRGFFP Sbjct: 473 NWRDKIPAVVHLDGSARLQTISRNSPHKIAALLIEFEQLTGIPLLCTTSANLHGRGFFPD 532 Query: 489 LAAACKWGRVEHVWCDGMLWRKT 511 AAAC+WGRVEHVWC+GMLW KT Sbjct: 533 AAAACQWGRVEHVWCEGMLWSKT 555 >ref|NP_443985.1| nodulation protein NodU [Sinorhizobium fredii NGR234] sp|P31957.2|NODU_RHISN RecName: Full=Nodulation protein U emb|CAA62004.1| nodU [Rhizobium sp.] gb|AAB91782.1| nodulation protein NodU; involved in C-6 carbamoylation of Nodulation factor [Sinorhizobium fredii NGR234] Length = 558 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 307/457 (67%), Positives = 355/457 (77%), Gaps = 25/457 (5%) Query: 62 RIRAIRTSP-------ATWLASPFAGAGQPAFCLVWDGGTFPRLYHVERGGAARFIECLF 114 R+ + R+ P + + SPFA +G PA CLVWDG FPRLYHVE G A F++ LF Sbjct: 114 RVFSYRSYPHVTSHVASAYCTSPFAKSGDPALCLVWDGCIFPRLYHVE-GKRASFVKSLF 172 Query: 115 PVIGHVYAAAALHYGPYKRATRANWDLSEPGKVDPGGAGKLNLGVAGKLMAYIALGSVNE 174 PV G YAAA ++GPYK+ +R WDL GVAGKLMA+IALGSV+E Sbjct: 173 PVTGQAYAAAGHYFGPYKQTSRGGWDL----------------GVAGKLMAFIALGSVHE 216 Query: 175 DIVAIFQELYKERFAADTKRG-SYRTDVKSMELELTTIHDFFDASALRLKAKAPEDVLAS 233 IVA+FQ+LY+E FA DT ++R ++ + E L +HDFF ASAL+L A+APEDVLAS Sbjct: 217 RIVAVFQKLYQEHFAGDTALACAFRANINNSESSLAAVHDFFAASALQLGAEAPEDVLAS 276 Query: 234 FHCFLERLLVHEMARALQRQSRLAALNLCIAGGCGLNIKWNSALRAAGLFDAVWVPPFPN 293 H FLERLLV EMA ALQ A NLCIAGGCGLNIKWNSALR GLFD+VWVPPFPN Sbjct: 277 SHFFLERLLVDEMANALQHHPLPGARNLCIAGGCGLNIKWNSALRETGLFDSVWVPPFPN 336 Query: 294 DSGSAIGAACCAMVAEKGLAPLQWSVYSGPALQRSDAPLEWDALPCSMHELATLLASNKP 353 DSGSAIGAACC +VA++G PL WSVYSGP+LQ P W A PCS+ E+A +LASNKP Sbjct: 337 DSGSAIGAACCEIVAQQGFVPLDWSVYSGPSLQAGKVPAGWHASPCSISEVAAILASNKP 396 Query: 354 VIFLTGRAELGPRALGSRSILAAATSSGMKDYLNDIKHREHFRPVAPICLEDRAPEIFSP 413 V+FL+GR+ELGPRALG RSILAAATS MKD+LN+IK REHFRPVAPICLEDRAP+IFSP Sbjct: 397 VVFLSGRSELGPRALGGRSILAAATSPEMKDHLNEIKFREHFRPVAPICLEDRAPDIFSP 456 Query: 414 GTPDPYMLFDHQTRAEWRDRIPAVVHLDGSARLQTICRTSQHKVAELLVEYEAITGIPLL 473 GTPDPYMLFDHQT+ W+D++PAVVHLDGSARLQTI R SQHKVAE+LVEYE +TGIPLL Sbjct: 457 GTPDPYMLFDHQTKMPWQDKVPAVVHLDGSARLQTISRNSQHKVAEVLVEYEKLTGIPLL 516 Query: 474 CNTSANNNGRGFFPHLAAACKWGRVEHVWCDGMLWRK 510 CNTSAN +GRGFFP AAAC+WGRVEHVWCDGML+RK Sbjct: 517 CNTSANYHGRGFFPSAAAACEWGRVEHVWCDGMLYRK 553