BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0012.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_783011.1| peptidoglycan binding domain-containing protein... 808 0.0 ref|YP_568545.1| peptidoglycan binding domain-containing protein... 807 0.0 ref|NP_773771.1| hypothetical protein blr7131 [Bradyrhizobium ja... 799 0.0 ref|YP_485049.1| hypothetical protein RPB_1428 [Rhodopseudomonas... 785 0.0 ref|YP_001203334.1| putative signal peptide [Bradyrhizobium sp. ... 764 0.0 >ref|YP_783011.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisA53] gb|ABJ08031.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris BisA53] Length = 705 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/457 (84%), Positives = 418/457 (91%), Gaps = 4/457 (0%) Query: 2 PDFAAATSPDALADAELKLAASMLDYARQAQSGRMHWSQVSGDILYPEHPIDPAEVFANV 61 PDFAAATSPDALA+AELKL ASMLDYARQAQSGRMHWSQVS DILYPEHPIDPAEV ANV Sbjct: 211 PDFAAATSPDALAEAELKLTASMLDYARQAQSGRMHWSQVSSDILYPEHPIDPAEVLANV 270 Query: 62 TSAKDASAALDGYNPQQKLYKELKKKLAELRGQGDGPVITIADGPALKYLPARKKQAAVE 121 T+AKD SAAL GYNP KLY+ELK KLAELRGQGDGPV+TIA+GPALKY+PARKKQAA+E Sbjct: 271 TNAKDPSAALAGYNPPHKLYRELKAKLAELRGQGDGPVVTIAEGPALKYVPARKKQAAIE 330 Query: 122 MDDPRVPDLRNKLGITEDADSTKYDATVARAVEKFQSSVDLKPTGVLDERTVKALNNPKR 181 +DDPRVP LR KLGITE+ADSTKYDA VA AV KFQ + D+ TGVLD+RTVKALN+PKR Sbjct: 331 VDDPRVPQLRAKLGITENADSTKYDAKVAAAVRKFQDATDIPVTGVLDDRTVKALNSPKR 390 Query: 182 DRQIDTVIVNMERWRWLPRQLGEKKNASVGNAYVILNIPDYTLKVMQNGAPVWTTRVVTG 241 DRQID V+VNMERWRWLPRQLG +S+GNAYVILN+PD+TLKVMQN A VWTTRVVTG Sbjct: 391 DRQIDIVVVNMERWRWLPRQLGA---SSLGNAYVILNVPDFTLKVMQNDAAVWTTRVVTG 447 Query: 242 KPGQHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLQRMGLRLERNRDGSI 301 KPG+HATP+LTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVL RMGL+LERNRDGSI Sbjct: 448 KPGKHATPMLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSI 507 Query: 302 HISQPPGEANALGRIRFNFPNKFLVYQHDTPDKYLFAKDERAFSHGCMRVQNPDQYAAVL 361 HISQPPGE NALGRIRFNFPNKFLVYQHDTPDK+LFA+DERAFSHGCMRVQNPDQYAA L Sbjct: 508 HISQPPGERNALGRIRFNFPNKFLVYQHDTPDKHLFARDERAFSHGCMRVQNPDQYAATL 567 Query: 362 LNITEPNQHYTPERIRSMYGSSEVDLKFPTPIPVNITYQTAFVDDAGKLQFRRDVYGRDA 421 LNIT PN+ Y+PERIR MYG SE+DLKFPTPIPVNITYQTAFVDD+GKLQ R+D+YGRDA Sbjct: 568 LNITMPNERYSPERIRGMYGRSEIDLKFPTPIPVNITYQTAFVDDSGKLQIRKDIYGRDA 627 Query: 422 TMLSLLRNSRGKDLETVVAHAQPSYSRPPSSSLPAGV 458 M+ LLRNSRGKDLE VVAHAQPSY+R P + +P GV Sbjct: 628 AMIGLLRNSRGKDLENVVAHAQPSYAR-PRADIPQGV 663 >ref|YP_568545.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB5] gb|ABE38644.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB5] Length = 716 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/482 (80%), Positives = 423/482 (87%), Gaps = 7/482 (1%) Query: 1 VPDFAAATSPDALADAELKLAASMLDYARQAQSGRMHWSQVSGDILYPEHPIDPAEVFAN 60 VPDFAAATSPDALA+AEL+L SM+DYARQAQSGRMHWSQ DI YPEHPIDPAEV AN Sbjct: 222 VPDFAAATSPDALAEAELRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPAEVLAN 281 Query: 61 VTSAKDASAALDGYNPQQKLYKELKKKLAELRGQGDGPVITIADGPALKYLPARKKQAAV 120 VT+AKDASAALD YNP K Y+ELKKKLAELRG+ PV+ IA+G LK++PARKKQ AV Sbjct: 282 VTTAKDASAALDSYNPPHKPYRELKKKLAELRGESGMPVLKIAEGETLKFVPARKKQPAV 341 Query: 121 EMDDPRVPDLRNKLGITEDADSTKYDATVARAVEKFQSSVDLKPTGVLDERTVKALNNPK 180 MDDPRVP LR KLGITEDADS+ YDA VA AV KFQ S DLKPTGVLD+RTVK LN PK Sbjct: 342 TMDDPRVPQLRAKLGITEDADSSTYDAKVAEAVRKFQRSADLKPTGVLDDRTVKVLNTPK 401 Query: 181 RDRQIDTVIVNMERWRWLPRQLGEKKNASVGNAYVILNIPDYTLKVMQNGAPVWTTRVVT 240 RDR IDT+IVNMERWRWLPRQLG AS+GNAYVILNIPDYTLKVMQNGA VWTTRVVT Sbjct: 402 RDRSIDTIIVNMERWRWLPRQLGA---ASIGNAYVILNIPDYTLKVMQNGAQVWTTRVVT 458 Query: 241 GKPGQHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLQRMGLRLERNRDGS 300 GKPG+HATPLLTETMKYITVNPTWNVPPSII NEYLPAL QDPTVL RMGL++ RNRDGS Sbjct: 459 GKPGKHATPLLTETMKYITVNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGS 518 Query: 301 IHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKYLFAKDERAFSHGCMRVQNPDQYAAV 360 IHISQPPGEANALGR+RFNFPNKFLVYQHDTPDK LFA+DERAFSHGCMRVQNPDQYAA Sbjct: 519 IHISQPPGEANALGRVRFNFPNKFLVYQHDTPDKNLFARDERAFSHGCMRVQNPDQYAAA 578 Query: 361 LLNITEPNQHYTPERIRSMYGSSEVDLKFPTPIPVNITYQTAFVDDAGKLQFRRDVYGRD 420 LLNIT PN+ YTPE+IRSMYG SE+DLKFPTPIPVNITYQTAFVDD GKLQ R+D+YGRD Sbjct: 579 LLNITMPNERYTPEKIRSMYGRSEIDLKFPTPIPVNITYQTAFVDDDGKLQIRKDIYGRD 638 Query: 421 ATMLSLLRNSRGKDLETVVAHAQPSYSRPPSSSLPAGVNVAGDNGFGS--SGPNFFERLF 478 + ML++LRN +GK+LE VVAH+QP+YSRP ++LP GVNVAGD S SG NFFERLF Sbjct: 639 SAMLAILRNDKGKNLEAVVAHSQPNYSRP--TNLPPGVNVAGDYTGSSQASGFNFFERLF 696 Query: 479 GG 480 GG Sbjct: 697 GG 698 >ref|NP_773771.1| hypothetical protein blr7131 [Bradyrhizobium japonicum USDA 110] dbj|BAC52396.1| blr7131 [Bradyrhizobium japonicum USDA 110] Length = 735 Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/504 (79%), Positives = 445/504 (88%), Gaps = 10/504 (1%) Query: 1 VPDFAAATSPDALADAELKLAASMLDYARQAQSGRMHWSQVSGDILYPEHPIDPAEVFAN 60 VPDFAAAT+PDALADAELKL ASM DYARQAQSGRMHWSQVS DILYPEHP+DP+EV A Sbjct: 241 VPDFAAATTPDALADAELKLTASMFDYARQAQSGRMHWSQVSADILYPEHPVDPSEVLAK 300 Query: 61 VTSAKDASAALDGYNPQQKLYKELKKKLAELRGQGDGPVITIADGPALKYLPARKKQAAV 120 VT+A DASAALD YNP QKLYKELK KLAELRGQG GPVI IADGPALKY PA KKQA + Sbjct: 301 VTTAADASAALDSYNPPQKLYKELKAKLAELRGQGSGPVIEIADGPALKYTPAGKKQAEI 360 Query: 121 EMDDPRVPDLRNKLGITEDADSTKYDATVARAVEKFQSSVDLKPTGVLDERTVKALNNPK 180 ++DPRVP LR KLGITE+A T+YDA VA AV KFQ+ ++K TG+LD++TVKALN PK Sbjct: 361 VVEDPRVPQLRAKLGITENASDTRYDAAVAEAVRKFQNGAEIKATGILDDKTVKALNTPK 420 Query: 181 RDRQIDTVIVNMERWRWLPRQLGEKKNASVGNAYVILNIPDYTLKVMQNGAPVWTTRVVT 240 RD+QIDTV+VNMERWRWLPR LG S+G+AYVILNIPDYTLKVMQ G PVWTTRVVT Sbjct: 421 RDKQIDTVLVNMERWRWLPRDLGV---PSLGDAYVILNIPDYTLKVMQRGQPVWTTRVVT 477 Query: 241 GKPGQHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLQRMGLRLERNRDGS 300 GKPGQHATPLLTETMKYITVNPTWNVPPSI+YNEYLPALQQDPTVLQRMGL+LE+NRDGS Sbjct: 478 GKPGQHATPLLTETMKYITVNPTWNVPPSIVYNEYLPALQQDPTVLQRMGLKLEQNRDGS 537 Query: 301 IHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKYLFAKDERAFSHGCMRVQNPDQYAAV 360 +HISQPPGEANALGRIRFNFPNKFLVYQHDTPDK LFAK++RAFSHGCMRVQNPDQYA+V Sbjct: 538 VHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCMRVQNPDQYASV 597 Query: 361 LLNITEPNQHYTPERIRSMYGSSEVDLKFPTPIPVNITYQTAFVDDAGKLQFRRDVYGRD 420 LLNI PN+ YTPER+RSMYG SE+DLKFPTPIPVNITYQTAFVDDAGKLQFR+DVYGRD Sbjct: 598 LLNIAMPNEKYTPERVRSMYGKSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDVYGRD 657 Query: 421 ATMLSLLRNSRGKDLETVVAHAQPSYSRPPSSSLPAGVNVA-GDNGFGSSGPNFFERLFG 479 +TM+++L+NSRGKDLE +VAH+QPSYSR P+++LP+GV VA GFGSSGPNFFERLFG Sbjct: 658 STMINILKNSRGKDLENIVAHSQPSYSR-PATTLPSGVAVANNGGGFGSSGPNFFERLFG 716 Query: 480 GFGQPEPQPIRRGQAQQQRRVITR 503 P P P+ R + +RV TR Sbjct: 717 A-PTPPPTPVGR----RPQRVFTR 735 >ref|YP_485049.1| hypothetical protein RPB_1428 [Rhodopseudomonas palustris HaA2] gb|ABD06138.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 718 Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/500 (77%), Positives = 429/500 (85%), Gaps = 7/500 (1%) Query: 1 VPDFAAATSPDALADAELKLAASMLDYARQAQSGRMHWSQVSGDILYPEHPIDPAEVFAN 60 VPDFAAA SP LA+AEL+L SM+DYARQAQSGRMHWSQ DI YPEHPIDPA+V A+ Sbjct: 224 VPDFAAAPSPTTLAEAELRLTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPADVLAS 283 Query: 61 VTSAKDASAALDGYNPQQKLYKELKKKLAELRGQGDGPVITIADGPALKYLPARKKQAAV 120 VT+AKDASAAL YNP +LYKELKKKLAELRG+ DGPV+ IA+G LK++PARKKQAAV Sbjct: 284 VTTAKDASAALGSYNPPHRLYKELKKKLAELRGESDGPVLKIAEGETLKFVPARKKQAAV 343 Query: 121 EMDDPRVPDLRNKLGITEDADSTKYDATVARAVEKFQSSVDLKPTGVLDERTVKALNNPK 180 MDDPRVP LR KLGITEDADST YDA VA AV KFQ DLKPTG+LD+RTVKALN PK Sbjct: 344 TMDDPRVPQLRAKLGITEDADSTTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALNTPK 403 Query: 181 RDRQIDTVIVNMERWRWLPRQLGEKKNASVGNAYVILNIPDYTLKVMQNGAPVWTTRVVT 240 RDR IDT++VNMERWRWLPRQLG AS+G+AYVILN+PDYTLK+M NGA VWTTRVV Sbjct: 404 RDRTIDTIMVNMERWRWLPRQLGA---ASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVI 460 Query: 241 GKPGQHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLQRMGLRLERNRDGS 300 GKPG+HATPLLTETMKYITVNPTWNVPPSII NEYLPAL QDPTVL RMGL++ RNRDGS Sbjct: 461 GKPGKHATPLLTETMKYITVNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGS 520 Query: 301 IHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKYLFAKDERAFSHGCMRVQNPDQYAAV 360 IHISQPPGEANALGRIRFNFPNKFLVYQHDTPDK LFA++ERAFSHGCMRVQNPDQYAA Sbjct: 521 IHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDQYAAA 580 Query: 361 LLNITEPNQHYTPERIRSMYGSSEVDLKFPTPIPVNITYQTAFVDDAGKLQFRRDVYGRD 420 LLNI P++ YTP +IRSMYG SEV+L FPTPIPVNITYQTAFVDD GKLQ R+DVYGRD Sbjct: 581 LLNIAMPDKDYTPAKIRSMYGRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYGRD 640 Query: 421 ATMLSLLRNSRGKDLETVVAHAQPSYSRPPSSSLPAGVNVAGD--NGFGSSGPNFFERLF 478 A ML+LL+N +GK+LE VVAHAQP+YSRP +++P GVN+AGD SSG NFFERLF Sbjct: 641 ARMLALLKNDKGKNLEAVVAHAQPNYSRP--TNVPPGVNIAGDYTGSSQSSGLNFFERLF 698 Query: 479 GGFGQPEPQPIRRGQAQQQR 498 GG P+PQP+RR Q + R Sbjct: 699 GGPPAPQPQPMRRTQQRYTR 718 >ref|YP_001203334.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL75097.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 691 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/509 (78%), Positives = 430/509 (84%), Gaps = 15/509 (2%) Query: 1 VPDFAAA-TSPDALADAELKLAASMLDYARQAQSGRMHWSQVSGDILYPEHPIDPAEVFA 59 VPDFAAA ++PDALA+A+LKL SM+DYARQAQSGRMHWSQVS DI YPEHPIDP EV A Sbjct: 192 VPDFAAAGSAPDALAEADLKLTESMMDYARQAQSGRMHWSQVSADIQYPEHPIDPNEVLA 251 Query: 60 NVTSAKDASAALDGYNPQQKLYKELKKKLAELRGQGDGPVITIADGPALKYLPARKK--- 116 NVT AKDASAAL+ YNP KLYK LK KLAELRG DG I I DG LKY PAR K Sbjct: 252 NVTGAKDASAALESYNPPHKLYKLLKAKLAELRGDRDGTPIIIEDGEPLKYTPARGKNAP 311 Query: 117 QAAVEMDDPRVPDLRNKLGITEDADSTKYDATVARAVEKFQSSVDLKPTGVLDERTVKAL 176 +A +M DPRVP LR KLG+TE+ D +YDA VA AV KFQ SVDLKPTGVLD+RTVKAL Sbjct: 312 EAEAQMSDPRVPKLRAKLGLTENLDDIRYDAKVAAAVRKFQDSVDLKPTGVLDDRTVKAL 371 Query: 177 NNPKRDRQIDTVIVNMERWRWLPRQLGEKKNASVGNAYVILNIPDYTLKVMQNGAPVWTT 236 N PKRD+QIDTVIVNMERWRWLPR+LG ++GNAYVILNIPDYTLKVMQ+GA VWTT Sbjct: 372 NTPKRDKQIDTVIVNMERWRWLPRELGAP---AIGNAYVILNIPDYTLKVMQHGAQVWTT 428 Query: 237 RVVTGKPGQHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLQRMGLRLERN 296 RVVTGKPGQHATPLL+ETMK+ITVNPTWNVPPSIIYNEYLPALQQDPTVL RMGLRLER Sbjct: 429 RVVTGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLRLERA 488 Query: 297 RDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKYLFAKDERAFSHGCMRVQNPDQ 356 RDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDK LFAK++RAFSHGCMRVQ PDQ Sbjct: 489 RDGSIHISQPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCMRVQYPDQ 548 Query: 357 YAAVLLNITEPNQHYTPERIRSMYGSSEVDLKFPTPIPVNITYQTAFVDDAGKLQFRRDV 416 YA+VLLN+T P + YTPERIR MYGSSE+DLKFPTPIPVNITYQTAFVDDAGKLQFR+DV Sbjct: 549 YASVLLNLTMPGERYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDV 608 Query: 417 YGRDATMLSLLRNSRGKDLETVVAHAQPSYSRPPSSSLPAGVNV-AGDNGFGSSGPNFFE 475 YGRDATM+++L+NSRGKDLE VVAHAQPSYSR P LP VNV GSSGPNFFE Sbjct: 609 YGRDATMIAILKNSRGKDLENVVAHAQPSYSR-PKGPLPNSVNVSDNSFSSGSSGPNFFE 667 Query: 476 RLFGGFGQPE-PQPIRRGQAQQQRRVITR 503 RLFGG GQP P P+ R RRV TR Sbjct: 668 RLFGG-GQPTPPAPVGR----PPRRVFTR 691