BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0011.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_576511.1| peptidoglycan binding domain-containing protein... 103 2e-20 ref|YP_001242657.1| hypothetical protein BBta_6864 [Bradyrhizobi... 98 7e-19 ref|YP_004110684.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopse... 94 2e-17 ref|YP_001203334.1| putative signal peptide [Bradyrhizobium sp. ... 84 1e-14 ref|NP_773771.1| hypothetical protein blr7131 [Bradyrhizobium ja... 83 3e-14 >ref|YP_576511.1| peptidoglycan binding domain-containing protein [Nitrobacter hamburgensis X14] gb|ABE62051.1| Peptidoglycan-binding domain 1 [Nitrobacter hamburgensis X14] Length = 775 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/213 (46%), Positives = 110/213 (51%), Gaps = 41/213 (19%) Query: 2 AVAATFLTVSATSALAQ-DTPHSSASELAIDAAIPRPEPANVPPPTASDFKADTTAALP- 59 +AATFLTVS ++A AQ D SASELAIDAAIP PEPANVPPPTA+DFK D P Sbjct: 17 VLAATFLTVSTSAAFAQTDIAKKSASELAIDAAIPMPEPANVPPPTAADFKMDNVPPAPP 76 Query: 60 --DAAKPADVKPADVQATEAKPAETKPV---------------DAKPAEPSAT------- 95 A+KPAD K +D AT+ KPA+TK D K + + T Sbjct: 77 IVGASKPADHKTSDTTATDTKPADTKAAGTADSEAPSNVTAASDTKASGATTTSSDTKAS 136 Query: 96 -AKAVEPKPADAPKTDTAVAPPAAAAPAPAISTAPAASPAPATAAAPATAPAPATAAAPA 154 +KA E KPADA D AA PA I T A P A PA AA A Sbjct: 137 DSKAAETKPADAKPAD------VAATPADGIKTNEATKDEPKKDATATITPAATPPAATA 190 Query: 155 --------SEPAKAASNVAAEDQPVADKLRELL 179 EP KAASNV DQPVA+KL ELL Sbjct: 191 TAPAAKQPGEPVKAASNVPPADQPVAEKLHELL 223 >ref|YP_001242657.1| hypothetical protein BBta_6864 [Bradyrhizobium sp. BTAi1] gb|ABQ38751.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 702 Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 92/193 (47%), Positives = 102/193 (52%), Gaps = 53/193 (27%) Query: 1 MAVAATFLTVSATSALAQ-DTPHSSASELAIDAAIPRPEPANVPPPTASDFKADTTAALP 59 MAVAATFL VSATSALAQ D P ++A+ELAIDAAIP PEPANVPPPTASDFK DTTA Sbjct: 1 MAVAATFLAVSATSALAQGDAPRNNAAELAIDAAIPLPEPANVPPPTASDFKLDTTA--- 57 Query: 60 DAAKPADVKPADVQATEAKPAETKPVDAKPAEPSATAKAVEPKPADAP-KT-DTAVAPPA 117 V P PA P KT D A P Sbjct: 58 --------------------------------------TVSPGPAKTPDKTPDLAKTPEQ 79 Query: 118 AAAPAPAISTAPAASPAPATAAAPATA----PAPATAAAPASEPAKAASNVAAEDQPVAD 173 A AP P T P + A A T A ATA PA +P KAASN+ A DQPVAD Sbjct: 80 AKAPEP---TKPLDAVAAPAAEPAKTMASPPAATATAPEPAKDPVKAASNIPAADQPVAD 136 Query: 174 KLRELLA--GSRC 184 +LR+L+A G+R Sbjct: 137 RLRDLIATKGARY 149 >ref|YP_004110684.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gb|ADU45951.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 743 Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 107/200 (53%), Gaps = 45/200 (22%) Query: 1 MAVAATFLTVSATSALAQDTPHSSASELAIDAAIPRPEPANVPPPTASDFKAD------- 53 MAVAATFLTVS TS LAQ +P S ++LAIDAA+P P P ++PPPT DFK D Sbjct: 16 MAVAATFLTVSTTSVLAQ-SPARSPADLAIDAAVPVPNPVDLPPPTIGDFKPDSTPAAAS 74 Query: 54 --------TTAALPDAAKPADVKPADVQATEAKPAETKPVDAKPAEPS--ATAKAVEPKP 103 T+A +P + +P+ K ++TEAK ETK + K E ATA A EPK Sbjct: 75 APRAGENQTSATVPSSTEPS--KDVATKSTEAKDTETKNTETKNTETKDAATAAAGEPK- 131 Query: 104 ADAPKTDTAVAPPAAAAPAPAISTAPAASPA-PATAAAPATAPAPATAAAPASEPAKAAS 162 V PAA A AP A PA PA A P A P +P AS Sbjct: 132 ---------VEAPAATA------NAPVAEPAKPAADQASTVKP-----AEPQQQP---AS 168 Query: 163 NVAAEDQPVADKLRELLAGS 182 VAA DQPVAD+LR+LLA S Sbjct: 169 TVAAADQPVADQLRDLLAKS 188 >ref|YP_001203334.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL75097.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 691 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/59 (81%), Positives = 50/59 (84%), Gaps = 1/59 (1%) Query: 1 MAVAATFLTVSATSALAQ-DTPHSSASELAIDAAIPRPEPANVPPPTASDFKADTTAAL 58 MAVAATFL VS TSALAQ D P SS +ELAIDAAIP PEPANVPPPTASDFK DTTA + Sbjct: 1 MAVAATFLAVSTTSALAQNDPPRSSPAELAIDAAIPFPEPANVPPPTASDFKLDTTATV 59 Score = 37.4 bits (85), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/26 (69%), Positives = 22/26 (84%) Query: 155 SEPAKAASNVAAEDQPVADKLRELLA 180 EP KAAS+V A DQPVAD+LR+L+A Sbjct: 106 GEPVKAASSVPAADQPVADRLRDLIA 131 >ref|NP_773771.1| hypothetical protein blr7131 [Bradyrhizobium japonicum USDA 110] dbj|BAC52396.1| blr7131 [Bradyrhizobium japonicum USDA 110] Length = 735 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 102/195 (52%), Positives = 123/195 (63%), Gaps = 18/195 (9%) Query: 1 MAVAATFLTVSATSALAQDTPHSSASELAIDAAIPRPEPANVPPPTASDFKADTTAALPD 60 M VAATFLTVSA+SALAQD SSA+ELAI+AAIPRPEPANVPPPTASD K D TA + D Sbjct: 16 MTVAATFLTVSASSALAQDQARSSAAELAIEAAIPRPEPANVPPPTASDIKLDATATVQD 75 Query: 61 AAKPADVKPADVQATEA-KPAETKPVDAKPAEPSATAKAVEPKPADAPKTDTAVAPPAAA 119 +AK +P +A A ETKP D AT A E APK++TA PA Sbjct: 76 SAKEPAKEPVKAEAAPAPDKVETKPSDV------ATTPATE-----APKSETAKTEPATT 124 Query: 120 APAPAISTAPAASPAPATAAAPATAPAPATAAAPASEPAKAASNVAAEDQPVADKLRELL 179 PA + + A APA APATAAAPA+EP KAAS+V A DQPVADKL++++ Sbjct: 125 EPAKS-----EPAKADTATTAPAAPAAPATAAAPAAEPVKAASSVPAADQPVADKLKDII 179 Query: 180 AGSRCAPSTARTSAR 194 G++ + R + R Sbjct: 180 -GAKTSRHFDRKNER 193