BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0197.0010.p (496 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773770.1| two-component response regulator [Bradyrhizobiu... 823 0.0 ref|YP_485050.1| two component, sigma54 specific, Fis family tra... 795 0.0 ref|YP_576512.1| two component, sigma54 specific, Fis family tra... 795 0.0 ref|YP_001993633.1| Fis family transcriptional regulator [Rhodop... 793 0.0 ref|YP_533821.1| two component sigma54 specific Fis family trans... 792 0.0 >ref|NP_773770.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52395.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 499 Score = 823 bits (2127), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/487 (83%), Positives = 441/487 (90%), Gaps = 3/487 (0%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 MAA+ILIADDDAV RRL+ENMVQKCGYE +VVDSGDAAIAALTA + AID V+LDLVMP Sbjct: 1 MAASILIADDDAVARRLIENMVQKCGYETVVVDSGDAAIAALTAPDAPAIDGVILDLVMP 60 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 GLDG+GVLAKIREAGL+VPVIVQTAHGGIDNV+SAMRAGA DFVVKPVG ERLQVSLRNA Sbjct: 61 GLDGMGVLAKIREAGLSVPVIVQTAHGGIDNVISAMRAGAADFVVKPVGMERLQVSLRNA 120 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 LNASALKGELQRIRHSREGRLTFSDIITR+EAMAGV+RTAQKAA+S+IPVLIEGESGVGK Sbjct: 121 LNASALKGELQRIRHSREGRLTFSDIITRAEAMAGVMRTAQKAANSSIPVLIEGESGVGK 180 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 E+FARAIHGSGERKA+PFVAVNCGAIPDNLVESILFGHEKGAFTGATERH GKFVEAHGG Sbjct: 181 EMFARAIHGSGERKAKPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHTGKFVEAHGG 240 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDEV ELPLA QVKLLRALQEG VEAVGGRKPVKVDVRIISATNR+LL+ VK G FR Sbjct: 241 TLFLDEVSELPLAAQVKLLRALQEGAVEAVGGRKPVKVDVRIISATNRRLLERVKQGHFR 300 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEENRNITGISGEAMAHLSQLDWP 360 EDLFYRLHVLPLTIP+LR RREDIPHLLRHFLARF AEENR ITGISGEA+AHL+QLDWP Sbjct: 301 EDLFYRLHVLPLTIPSLRTRREDIPHLLRHFLARFAAEENRTITGISGEAVAHLAQLDWP 360 Query: 361 GNIRQLENTVYRAVVMSDGDQLALADFPQGTAHPVAEGKSLQGEPLVVSPSTAPAMI-SG 419 GNIRQLEN VYRAVVMS+GDQL L DFP + P + PL++ P AP+++ SG Sbjct: 361 GNIRQLENAVYRAVVMSEGDQLGLGDFPLLASQPYP-ATEIPTAPLMLEPIAAPSVVSSG 419 Query: 420 NEIPVTVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSEVARRLKIGRSTL 479 +EIP+ LP+ G L ML A G+VRPLED+ENEIIRFAISHYRGQMSEVARRLKIGRSTL Sbjct: 420 SEIPIA-PLPSVGTLPMLTATGDVRPLEDMENEIIRFAISHYRGQMSEVARRLKIGRSTL 478 Query: 480 YRKLDEA 486 YRKLDEA Sbjct: 479 YRKLDEA 485 >ref|YP_485050.1| two component, sigma54 specific, Fis family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD06139.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris HaA2] Length = 500 Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/496 (80%), Positives = 428/496 (86%), Gaps = 2/496 (0%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M ILIADDD VQRRLVENMVQKCGYE ++ DSGDAA+A LTA +T A DAVVLDLVMP Sbjct: 1 MVERILIADDDPVQRRLVENMVQKCGYEAVLADSGDAAMALLTAPDTAAFDAVVLDLVMP 60 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 GLDGLGVL KIREAGL VPVIVQTAHGGIDNVVSAMRAGA DFVVKPVG ERLQVSLRNA Sbjct: 61 GLDGLGVLGKIREAGLNVPVIVQTAHGGIDNVVSAMRAGAHDFVVKPVGIERLQVSLRNA 120 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 LNASALKGELQRIRHSREGRLTFSDIITRS+AMA VLR AQKAA S+IPVLIEGESGVGK Sbjct: 121 LNASALKGELQRIRHSREGRLTFSDIITRSDAMAAVLRAAQKAAGSSIPVLIEGESGVGK 180 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 E+FARAIHGS ER+++PFVAVNCGAIPDNLVESILFGHEKGAFTGAT+RH GKFVEA GG Sbjct: 181 EMFARAIHGSSERQSKPFVAVNCGAIPDNLVESILFGHEKGAFTGATDRHMGKFVEASGG 240 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDEV ELPLA QVKLLRALQEG VEAVGGRKP+KVDVRIISATNR+LLD VK GQFR Sbjct: 241 TLFLDEVSELPLAAQVKLLRALQEGAVEAVGGRKPLKVDVRIISATNRRLLDRVKAGQFR 300 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEENRNITGISGEAMAHLSQLDWP 360 EDLFYRLHVLPLT+P LR RREDIP LLRHFL RFCAEENR I GISGEAMA L+QLDWP Sbjct: 301 EDLFYRLHVLPLTVPPLRTRREDIPPLLRHFLVRFCAEENRKIGGISGEAMARLAQLDWP 360 Query: 361 GNIRQLENTVYRAVVMSDGDQLALADFPQGTAHPVAEGKSLQGEPLVVSPSTAPAMISGN 420 GNIRQLEN VYRAVVMS+GDQL + DFP +A GEPL++ P + + N Sbjct: 361 GNIRQLENAVYRAVVMSEGDQLGIDDFPLASAPSTVPTGEADGEPLILEPPGSAQFVVAN 420 Query: 421 EIPVTVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSEVARRLKIGRSTLY 480 E P+ L T G L MLNA+G+VR L++LENEIIRFAISHYRGQMSEVARRLKIGRSTLY Sbjct: 421 EAPIA-PLSTHGSLQMLNASGDVRALDELENEIIRFAISHYRGQMSEVARRLKIGRSTLY 479 Query: 481 RKLDEAAAGARASDAT 496 RKLDE A ARA+ A+ Sbjct: 480 RKLDEMEA-ARAAKAS 494 >ref|YP_576512.1| two component, sigma54 specific, Fis family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE62052.1| two component, sigma54 specific, transcriptional regulator, Fis family [Nitrobacter hamburgensis X14] Length = 492 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/491 (79%), Positives = 436/491 (88%), Gaps = 6/491 (1%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M ATILIADDDAVQRRLVENMV++CGY+ +VV+ GDAAIAALTAS+ IDA++LDLVMP Sbjct: 1 MTATILIADDDAVQRRLVENMVRRCGYDAIVVEGGDAAIAALTASDGPVIDALILDLVMP 60 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 GLDG+GVLAKIREAG++VPV+VQTAHGGIDNVVSAMRAGA DFV+KPVG ERLQVSLRNA Sbjct: 61 GLDGMGVLAKIREAGISVPVVVQTAHGGIDNVVSAMRAGAHDFVIKPVGIERLQVSLRNA 120 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 LNASALKGEL+R+RHSREGRL+F+DIITRSE MA V+R A+KAASS+IPVLIEGESGVGK Sbjct: 121 LNASALKGELRRVRHSREGRLSFADIITRSETMANVMRVARKAASSSIPVLIEGESGVGK 180 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 ELFARAIHG+GER A+PFVAVNCGAIPDNLVESILFGHEKG+FTGATERH GKFVEA GG Sbjct: 181 ELFARAIHGTGERSAKPFVAVNCGAIPDNLVESILFGHEKGSFTGATERHTGKFVEASGG 240 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDEV ELPL QVKLLRALQEG VEAVGGRKPVKVDVR+ISATNR+LLD VK GQFR Sbjct: 241 TLFLDEVSELPLTAQVKLLRALQEGAVEAVGGRKPVKVDVRVISATNRRLLDRVKAGQFR 300 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEENRNITGISGEAMAHLSQLDWP 360 EDLFYRLHVLPLTIP LR RR+DIP+LLRHFLARFCAEENR I GISGEAMA LSQL+WP Sbjct: 301 EDLFYRLHVLPLTIPPLRTRRDDIPNLLRHFLARFCAEENRTINGISGEAMAGLSQLNWP 360 Query: 361 GNIRQLENTVYRAVVMSDGDQLALADFPQGTAHPVAEGKSLQGEPLVVSP---STAPAMI 417 GNIRQLEN VYRAVVMS+G+QL L DFP A P + ++ EPL++ P +P ++ Sbjct: 361 GNIRQLENAVYRAVVMSEGEQLGLPDFPLIGAQPATDAEA--NEPLIMEPMLRRPSPDVV 418 Query: 418 SGNEIPVTVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSEVARRLKIGRS 477 SGNEIP+ LP AG LAML GE+RPLE+LE +I+RFAISHYRGQMSEVARRLKIGRS Sbjct: 419 SGNEIPIA-PLPDAGSLAMLTYDGEIRPLEELEADIVRFAISHYRGQMSEVARRLKIGRS 477 Query: 478 TLYRKLDEAAA 488 TLYRKLD+ AA Sbjct: 478 TLYRKLDDIAA 488 >ref|YP_001993633.1| Fis family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF03158.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris TIE-1] Length = 495 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/488 (81%), Positives = 425/488 (87%), Gaps = 2/488 (0%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 M ILIADDDAVQRRLVENMVQKCGYE + VDSGDAA+ ALTA + AIDAVVLDLVMP Sbjct: 1 MVERILIADDDAVQRRLVENMVQKCGYEAVSVDSGDAAVEALTAPDAPAIDAVVLDLVMP 60 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 GLDGLGVL+KIR +GL VPVIVQTAHGGIDNVVSAMRAGA DFVVKPVG ERLQVSLRNA Sbjct: 61 GLDGLGVLSKIRASGLDVPVIVQTAHGGIDNVVSAMRAGAHDFVVKPVGIERLQVSLRNA 120 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 LNASA+KGELQRIRH+REGRLTFSDIITRSEAMA VLR A+KAA S IPVLIEGESGVGK Sbjct: 121 LNASAMKGELQRIRHAREGRLTFSDIITRSEAMAPVLRAAEKAAGSAIPVLIEGESGVGK 180 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 ELFARAIHGS +R+++PFVAVNCGAIPDNLVESILFGHEKGAFTGATERH GKFVEA GG Sbjct: 181 ELFARAIHGSSDRRSKPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHDGKFVEASGG 240 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDEV ELPLA QVKLLRALQEG VEAVGGR+PVKVDVRIISATNR+LLD VK GQFR Sbjct: 241 TLFLDEVSELPLAAQVKLLRALQEGAVEAVGGRRPVKVDVRIISATNRRLLDRVKAGQFR 300 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEENRNITGISGEAMAHLSQLDWP 360 EDLFYRLHVLPLTIP LR RREDIP LLRHFL RFCAEE R+I GI+GEAMA L+QLDWP Sbjct: 301 EDLFYRLHVLPLTIPPLRTRREDIPPLLRHFLMRFCAEEKRSIGGITGEAMARLAQLDWP 360 Query: 361 GNIRQLENTVYRAVVMSDGDQLALADFPQGTAHPVAEGKSLQGEPLVVSPSTAPAMISGN 420 GNIRQLEN VYRAVVMSDGDQL LADFP A V + GEPLV+ S P ++ + Sbjct: 361 GNIRQLENAVYRAVVMSDGDQLGLADFPLAIAPSVVPAEDTTGEPLVIERSE-PQFVAAS 419 Query: 421 EIPVTVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSEVARRLKIGRSTLY 480 E+P+ LP+ G L+ML A EVRPL+++E EIIRFAISHYRGQMSEVARRLKIGRSTLY Sbjct: 420 EVPIA-PLPSVGNLSMLTADDEVRPLDEMEREIIRFAISHYRGQMSEVARRLKIGRSTLY 478 Query: 481 RKLDEAAA 488 RKLDE A Sbjct: 479 RKLDEIEA 486 >ref|YP_533821.1| two component sigma54 specific Fis family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD89502.1| two component, sigma54 specific, transcriptional regulator, Fis family [Rhodopseudomonas palustris BisB18] Length = 500 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/499 (78%), Positives = 434/499 (86%), Gaps = 8/499 (1%) Query: 1 MAATILIADDDAVQRRLVENMVQKCGYEPLVVDSGDAAIAALTASETQAIDAVVLDLVMP 60 MA TILIADDDAVQRRLVENMVQKCGY +VVDSGDAAI LTA + IDAVVLDLVMP Sbjct: 1 MATTILIADDDAVQRRLVENMVQKCGYRTVVVDSGDAAIETLTADDAPTIDAVVLDLVMP 60 Query: 61 GLDGLGVLAKIREAGLTVPVIVQTAHGGIDNVVSAMRAGAQDFVVKPVGFERLQVSLRNA 120 GLDG+GVL ++R+AGL++PVIVQTAHGGIDNVVSAMRAGA DFVVKPVG ERLQ+SLRNA Sbjct: 61 GLDGMGVLERMRDAGLSIPVIVQTAHGGIDNVVSAMRAGATDFVVKPVGIERLQISLRNA 120 Query: 121 LNASALKGELQRIRHSREGRLTFSDIITRSEAMAGVLRTAQKAASSTIPVLIEGESGVGK 180 LNASALKGELQR++HSR+G+LTF+D++TRSE M VLR A++ A+S IPVLIEGESGVGK Sbjct: 121 LNASALKGELQRLKHSRDGKLTFADLVTRSEPMGHVLRMAKRGATSAIPVLIEGESGVGK 180 Query: 181 ELFARAIHGSGERKARPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHQGKFVEAHGG 240 EL ARAIHGS ER A+PFVAVNCGAIPDNLVESILFGHEKGAFTGATERH GKFVEA GG Sbjct: 181 ELIARAIHGSSERSAKPFVAVNCGAIPDNLVESILFGHEKGAFTGATERHTGKFVEASGG 240 Query: 241 TLFLDEVGELPLATQVKLLRALQEGTVEAVGGRKPVKVDVRIISATNRKLLDLVKGGQFR 300 TLFLDEV ELPLA QVKLLRALQEG VEAVGGR+P+KVDVRIISATNRKLLD VK GQFR Sbjct: 241 TLFLDEVSELPLAAQVKLLRALQEGAVEAVGGRRPLKVDVRIISATNRKLLDRVKAGQFR 300 Query: 301 EDLFYRLHVLPLTIPALRQRREDIPHLLRHFLARFCAEENRNITGISGEAMAHLSQLDWP 360 EDLFYRLHVLPLTIP LR RREDIPHLLRHFLARFCAEENR ITG+SGEAMA L+QLDWP Sbjct: 301 EDLFYRLHVLPLTIPPLRNRREDIPHLLRHFLARFCAEENRTITGVSGEAMARLAQLDWP 360 Query: 361 GNIRQLENTVYRAVVMSDGDQLALADFPQGTAHP-VAEGKSLQGEPLVVSP---STAPAM 416 GN+RQLEN VYRAVVMS+G L LADFP A P VAE L GEPL++ P STAP + Sbjct: 361 GNVRQLENAVYRAVVMSEGTHLDLADFPLTAAAPSVAE---LAGEPLLIEPAFHSTAPQL 417 Query: 417 ISGNEIPVTVSLPTAGGLAMLNAAGEVRPLEDLENEIIRFAISHYRGQMSEVARRLKIGR 476 ++G++IP+ +P AG L+ML GEVRPL++LE+EIIRFAISHYRGQMSEVARRLKIGR Sbjct: 418 VAGHDIPIA-PMPAAGSLSMLTPDGEVRPLDELESEIIRFAISHYRGQMSEVARRLKIGR 476 Query: 477 STLYRKLDEAAAGARASDA 495 STLYRKLDE R + A Sbjct: 477 STLYRKLDETTHAEREARA 495