BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0196.0018.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772892.1| transcriptional regulator [Bradyrhizobium japon... 505 e-141 ref|YP_001204742.1| AraC family transcriptional regulator [Brady... 304 2e-80 ref|NP_102281.1| transcriptional regulator [Mesorhizobium loti M... 243 3e-62 ref|YP_001682255.1| AraC family transcriptional regulator [Caulo... 222 5e-56 ref|YP_003608357.1| AraC family transcriptional regulator [Burkh... 219 4e-55 >ref|NP_772892.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51517.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 371 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 239/310 (77%), Positives = 267/310 (86%) Query: 7 MTQAGAYGQRLGQFLRLKDTPPALITRTLRSAELAVTETRDDNPVPGLSGSLTAEDAFLV 66 MTQAGAYGQRLGQFLRLKD PP+L+TR+LRSAELAVTETR+DNPVPGLSGSL AEDAFLV Sbjct: 62 MTQAGAYGQRLGQFLRLKDAPPSLVTRSLRSAELAVTETRNDNPVPGLSGSLAAEDAFLV 121 Query: 67 SLKLHDYLDCELWEGGKCLMKRDIPAGATYLYDLKRDPRYVIDKPFHSLFFYLPRSALTD 126 SLKLHDY DCELWE GKC+M D+ AG TYLYDLK DPRYVIDKPFHSLFFY+PRSAL Sbjct: 122 SLKLHDYPDCELWERGKCIMTADVHAGTTYLYDLKCDPRYVIDKPFHSLFFYIPRSALDS 181 Query: 127 FAEQTGSPHIGELACEIGNGHDDGVIRHVGALLREGLRRPEETNQLFIDHMMLALTAHVT 186 AEQ +P + EL C+IG GHDD ++RH+GA L+EGLRRP+E NQLFIDHMML LTAHV Sbjct: 182 IAEQCNAPRVDELDCQIGVGHDDRIVRHIGASLQEGLRRPDEANQLFIDHMMLGLTAHVA 241 Query: 187 RTYGGLQHPTRPTRGGLAAWQINRACEKLECDLSGKISLKQIAAELDLSVGHFSRAFRIS 246 +TYGGLQ + RGGLA WQ RACE+LE DL GK+SL++IAAELDLSV HFSRAFRIS Sbjct: 242 QTYGGLQRTSGLARGGLAPWQAKRACERLESDLGGKLSLQRIAAELDLSVSHFSRAFRIS 301 Query: 247 TGLPPHQWLLQQRLKVAKQLMAARDLSLSEIAISAGFANQSHFTRVFSAVVGVSPAAWRR 306 G+PPHQWLLQQR+K AKQLM+ RDL LSEIAISAGFANQSHFTRVFS++VGVSPAAWRR Sbjct: 302 VGVPPHQWLLQQRVKAAKQLMSVRDLPLSEIAISAGFANQSHFTRVFSSIVGVSPAAWRR 361 Query: 307 EMHRPAKSES 316 EM + E+ Sbjct: 362 EMLGASNGET 371 >ref|YP_001204742.1| AraC family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL76505.1| putative transcriptional regulatory protein, AraC family [Bradyrhizobium sp. ORS 278] Length = 322 Score = 304 bits (778), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 149/300 (49%), Positives = 197/300 (65%), Gaps = 1/300 (0%) Query: 7 MTQAGAYGQRLGQFLRLKDTPPALITRTLRSAELAVTETRDDNPVPGLSGSLTAEDAFLV 66 M + +G+RL LRL+ P L+TR + L E R D+P GLS L +DA++V Sbjct: 8 MVETEIFGKRLKAGLRLEQAP-TLVTRAFADSVLEAAECRSDDPQKGLSHPLPLDDAYMV 66 Query: 67 SLKLHDYLDCELWEGGKCLMKRDIPAGATYLYDLKRDPRYVIDKPFHSLFFYLPRSALTD 126 S+K DY DCE WE G+ + K+DI AG TYLYD+KR P YVIDKPFHS+F+ L R + Sbjct: 67 SVKFRDYPDCECWENGRTVAKKDIFAGGTYLYDMKRAPCYVIDKPFHSIFYRLSREVIEG 126 Query: 127 FAEQTGSPHIGELACEIGNGHDDGVIRHVGALLREGLRRPEETNQLFIDHMMLALTAHVT 186 A + S +GEL+ E G DD V+RH+ + E L RP+E N+LF+DH+ + + AHV Sbjct: 127 TAREMFSASVGELSYEPAVGVDDPVMRHLSHAMSEALGRPDEANRLFVDHLSMTIVAHVV 186 Query: 187 RTYGGLQHPTRPTRGGLAAWQINRACEKLECDLSGKISLKQIAAELDLSVGHFSRAFRIS 246 RTYGG P GGLAAWQ+ RAC+ +E LSG I L+ IA+E DLS +F+RAF+ S Sbjct: 187 RTYGGSGEPAPLLPGGLAAWQVRRACDLIEARLSGSILLQDIASEFDLSPSYFARAFKKS 246 Query: 247 TGLPPHQWLLQQRLKVAKQLMAARDLSLSEIAISAGFANQSHFTRVFSAVVGVSPAAWRR 306 G+ PHQWLLQ+R+ A+ L+ +LSL IA+ GFA+QSHFTR F+ +VG SP WRR Sbjct: 247 VGVAPHQWLLQRRVARARDLLVQGELSLGMIALEVGFADQSHFTRTFTRLVGTSPDRWRR 306 >ref|NP_102281.1| transcriptional regulator [Mesorhizobium loti MAFF303099] dbj|BAB48067.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 313 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 134/302 (44%), Positives = 183/302 (60%), Gaps = 1/302 (0%) Query: 5 TRMTQAGAYGQRLGQFLRLKDTPPALITRTLRSAELAVTETRDDNPVPGLSGSLTAEDAF 64 +R+ AGAYG R + +L T +LR+ E+A TET P S + EDAF Sbjct: 9 SRLPSAGAYGDRFASYFKLAKAS-VFKTGSLRTGEIAYTETSGYCHKPEPSVPVPPEDAF 67 Query: 65 LVSLKLHDYLDCELWEGGKCLMKRDIPAGATYLYDLKRDPRYVIDKPFHSLFFYLPRSAL 124 LV +L DY + WE G+ + + AG T L DL+R P +I P H++ FY+PR+ Sbjct: 68 LVQTQLQDYPNHISWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHFYIPRATF 127 Query: 125 TDFAEQTGSPHIGELACEIGNGHDDGVIRHVGALLREGLRRPEETNQLFIDHMMLALTAH 184 AE + I ELA DD VIR + +R ++ PEETN+LF+DH+M+A H Sbjct: 128 NTVAEDLEARSISELAYVPAQPIDDDVIRGLIGTVRAAIKAPEETNRLFLDHLMMAAAVH 187 Query: 185 VTRTYGGLQHPTRPTRGGLAAWQINRACEKLECDLSGKISLKQIAAELDLSVGHFSRAFR 244 + +TYGGL+ + RGGLA WQ A E LE DL+G++ LK +AA LSV +FS+AF Sbjct: 188 LAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVSYFSKAFC 247 Query: 245 ISTGLPPHQWLLQQRLKVAKQLMAARDLSLSEIAISAGFANQSHFTRVFSAVVGVSPAAW 304 +TGL PHQWLL +R++ AK M +L+E+A+S GF++QSHFTRVF +VG SPA W Sbjct: 248 KTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLVGTSPATW 307 Query: 305 RR 306 RR Sbjct: 308 RR 309 >ref|YP_001682255.1| AraC family transcriptional regulator [Caulobacter sp. K31] gb|ABZ69757.1| transcriptional regulator, AraC family [Caulobacter sp. K31] Length = 299 Score = 222 bits (566), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 117/272 (43%), Positives = 164/272 (60%) Query: 39 ELAVTETRDDNPVPGLSGSLTAEDAFLVSLKLHDYLDCELWEGGKCLMKRDIPAGATYLY 98 ++ V E + P L+ DA +V L+L DY WE G D+ AG T + Sbjct: 28 DVGVAEFQLPTPPVDLTPVAPRVDAVIVRLQLRDYPRQRYWEDGVAAAVCDVAAGQTLFH 87 Query: 99 DLKRDPRYVIDKPFHSLFFYLPRSALTDFAEQTGSPHIGELACEIGNGHDDGVIRHVGAL 158 DL+R PR ++D+P+H+L F++PR+A A + + IG+L + G D I ++ A Sbjct: 88 DLRRGPRLLLDQPYHALHFHIPRAAFDAIAVECNAAPIGDLDHQPGVAFHDSTIANLAAS 147 Query: 159 LREGLRRPEETNQLFIDHMMLALTAHVTRTYGGLQHPTRPTRGGLAAWQINRACEKLECD 218 +R R + +QLF DH+ LA+ HV YGG+ +R RGGLA WQ RA E L + Sbjct: 148 VRSDTREGSQRSQLFADHLTLAVATHVASRYGGMAPMSRSVRGGLAPWQTRRAKEILSAN 207 Query: 219 LSGKISLKQIAAELDLSVGHFSRAFRISTGLPPHQWLLQQRLKVAKQLMAARDLSLSEIA 278 L G +SL ++A + LS+GHFSRAFR S G PHQWL+Q+RL AK L+ + + LS +A Sbjct: 208 LDGGVSLAEVARQCGLSIGHFSRAFRQSLGTTPHQWLVQRRLDAAKDLIRSCRMPLSTVA 267 Query: 279 ISAGFANQSHFTRVFSAVVGVSPAAWRREMHR 310 +S GFA+QSH TRVF+ VG SPAAWRRE+ + Sbjct: 268 LSCGFADQSHLTRVFTREVGASPAAWRREVQQ 299 >ref|YP_003608357.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG18846.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1002] Length = 305 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 173/299 (57%), Gaps = 3/299 (1%) Query: 11 GAYGQRLGQFLRLKDTPPALITRTLRSAELAVTETRDDNPVPGLSGSLTAEDAFLVSLKL 70 GAYG+RLG+ L +TPP L +RT R L VTE D P G + + E A+L+ L+L Sbjct: 4 GAYGERLGRSFNL-ETPPTLGSRTER-GHLIVTELLRDKPGFGFTEPIAPESAYLLGLQL 61 Query: 71 HDYLDCELWEGGKCLMKRDIPAGATYLYDLKRDPRYVIDKPFHSLFFYLPRSALTDFAEQ 130 ELW G+ + I T+L+DL+ +P ++PFH LFFY+PR AL + Sbjct: 62 RGITHHELWVDGRSIPVSPIAPNTTHLFDLECNPVCYTNEPFHDLFFYVPREALAELGGD 121 Query: 131 TGSPHIGELACEIGNGHDDGVIRHVGALLREGLRRPEETNQLFIDHMMLALTAHVTRTYG 190 G +L G D VIRH+G L L + TNQ F+DH++LAL +H+ TYG Sbjct: 122 DGKSAPRDLHWPRGAFLGDEVIRHIGYALLPALHAQQHTNQTFVDHVLLALRSHLVTTYG 181 Query: 191 GLQHPTR-PTRGGLAAWQINRACEKLECDLSGKISLKQIAAELDLSVGHFSRAFRISTGL 249 G + T ++GGLA WQ R E + L+ + L ++A E +LS F RAFR STG+ Sbjct: 182 GFRAATAIRSQGGLAPWQERRVKELMRTRLADGVPLIELARECNLSTSTFVRAFRRSTGM 241 Query: 250 PPHQWLLQQRLKVAKQLMAARDLSLSEIAISAGFANQSHFTRVFSAVVGVSPAAWRREM 308 PHQWL+ +R+ A LM SL++IA+ GFA+QSHFTRVF+A +GV P +R + Sbjct: 242 SPHQWLMARRIDSAVALMGDHSRSLADIALLCGFADQSHFTRVFTARLGVRPGVYRANL 300