BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0196.0016.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771760.1| transcriptional regulator [Bradyrhizobium japon... 455 e-126 ref|NP_769434.1| transcriptional regulator [Bradyrhizobium japon... 428 e-118 ref|YP_001314455.1| helix-turn-helix domain-containing protein [... 417 e-114 ref|NP_437692.1| transcriptional regulator, araC family protein ... 412 e-113 ref|YP_004557114.1| AraC family transcriptional regulator [Sinor... 410 e-112 >ref|NP_771760.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC50385.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 362 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 239/317 (75%), Positives = 269/317 (84%), Gaps = 3/317 (0%) Query: 10 MSKPILHDPLRD-SSAASDPRQAEAPAGPRCPAGQEMARVLKTQPLRLAADPSSGAIAYW 68 M+K ILHDPL S A+ PR + P PA EMARVLKT P+R+A+DP GAIA+W Sbjct: 48 MNKTILHDPLAALFSPAAHPR--DVPVPELRPADVEMARVLKTAPIRMASDPLGGAIAHW 105 Query: 69 KHDALHDVVRPMVDHVVMSYPAGSQRLERRTGKVASIGTARSGVVTIIPAGSTSRWDIHQ 128 KH ALHDVV PM +HVVM+YP G QRLERR GK +IGTARSGVVTIIPAGS++RWDI Sbjct: 106 KHGALHDVVEPMANHVVMTYPCGVQRLERRAGKSVAIGTARSGVVTIIPAGSSARWDIAG 165 Query: 129 SLHVVQLYLPHATLARVAGEADTAAPGDLLERTGHPDPITSRLLLSAADALEGSAALDAL 188 ++VVQLYLPH TL RVA EA AAPGDL+ERTGHPDPITSRLLLSAADAL+G+AALDAL Sbjct: 166 DINVVQLYLPHTTLDRVAREARAAAPGDLMERTGHPDPITSRLLLSAADALDGNAALDAL 225 Query: 189 FRQQLTDLLATRLLSAHAGVPATVQATVGGLAPTALRRVIERLRSDSDADVSLGALAAEA 248 FR QLTDLLATR+L+AH G P +QA +GGL+PTALRR I+RLRS+SD+DVSL LA++A Sbjct: 226 FRHQLTDLLATRILAAHVGSPTAIQALIGGLSPTALRRAIDRLRSESDSDVSLAMLASDA 285 Query: 249 GLSRFHFCRAFKESTGLSPHAFLRQHRLEQAMNMLRDTDASVVSIAAALGYSSQTAFAAA 308 GLSRFHFCRAFKESTGLSPHA+LRQ+RLEQAMNMLRDTD SVVSIAAALGY+SQTAFAAA Sbjct: 286 GLSRFHFCRAFKESTGLSPHAWLRQYRLEQAMNMLRDTDDSVVSIAAALGYASQTAFAAA 345 Query: 309 FRKLTGETPSDWRRRLR 325 FRKL G TPSDWRRRLR Sbjct: 346 FRKLAGVTPSDWRRRLR 362 >ref|NP_769434.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48059.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 341 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/288 (73%), Positives = 238/288 (82%) Query: 38 RCPAGQEMARVLKTQPLRLAADPSSGAIAYWKHDALHDVVRPMVDHVVMSYPAGSQRLER 97 R A EMARVL+T+P R+A D S IA+WKHD LHDVV PM HV+M+Y QR+ER Sbjct: 54 RRAADAEMARVLRTEPARMALDSSGAGIAHWKHDPLHDVVEPMSHHVIMAYNGMMQRMER 113 Query: 98 RTGKVASIGTARSGVVTIIPAGSTSRWDIHQSLHVVQLYLPHATLARVAGEADTAAPGDL 157 R+GK +IGT R GVV IIP GS+SRWDI + + VVQLYLP+ATL RVA EA TA P DL Sbjct: 114 RSGKSVAIGTFRPGVVIIIPEGSSSRWDIPKPVDVVQLYLPNATLKRVADEAGTAKPADL 173 Query: 158 LERTGHPDPITSRLLLSAADALEGSAALDALFRQQLTDLLATRLLSAHAGVPATVQATVG 217 LERT HPDPITSRLLLSAADAL G+ ALD LFR QLTDLLATRLL AH G P Q T+G Sbjct: 174 LERTAHPDPITSRLLLSAADALGGNGALDTLFRHQLTDLLATRLLVAHTGSPTNFQQTMG 233 Query: 218 GLAPTALRRVIERLRSDSDADVSLGALAAEAGLSRFHFCRAFKESTGLSPHAFLRQHRLE 277 GL+P L R IERLRSDSDAD+SL ALA++AGLSRFHFCRAFKESTGLSPHA+LRQHRLE Sbjct: 234 GLSPKVLLRAIERLRSDSDADISLDALASDAGLSRFHFCRAFKESTGLSPHAWLRQHRLE 293 Query: 278 QAMNMLRDTDASVVSIAAALGYSSQTAFAAAFRKLTGETPSDWRRRLR 325 QAMNMLR++D SVVS+AAALGYSSQTAFAAAF+KLTGETPSDWRRR+R Sbjct: 294 QAMNMLRESDESVVSVAAALGYSSQTAFAAAFKKLTGETPSDWRRRMR 341 >ref|YP_001314455.1| helix-turn-helix domain-containing protein [Sinorhizobium medicae WSM419] gb|ABR64522.1| helix-turn-helix- domain containing protein AraC type [Sinorhizobium medicae WSM419] Length = 316 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 214/315 (67%), Positives = 247/315 (78%), Gaps = 2/315 (0%) Query: 10 MSKPILHDPLRDSSAAS-DPRQAEAPAGPRCPAGQEMARVLKTQPLRLAADPSSGAIAYW 68 MS P +P S A + D + E R PA EM+RVL T+P+ LAADPS GAIA+W Sbjct: 1 MSLPSASEPAESSPAETIDAHRHEMLDVNRNPA-NEMSRVLGTEPVHLAADPSGGAIAHW 59 Query: 69 KHDALHDVVRPMVDHVVMSYPAGSQRLERRTGKVASIGTARSGVVTIIPAGSTSRWDIHQ 128 HDALHDVV PM DHV+M+Y QR+ERR+G+ GT R GVV IIPAGS+SRWDI + Sbjct: 60 HHDALHDVVEPMTDHVIMAYNGAIQRMERRSGRSIESGTFRRGVVIIIPAGSSSRWDIPK 119 Query: 129 SLHVVQLYLPHATLARVAGEADTAAPGDLLERTGHPDPITSRLLLSAADALEGSAALDAL 188 + VVQLYLPHATL R+A E DT P DLLERT HPD ITSRLLLSAAD LEG+ ALD L Sbjct: 120 PVDVVQLYLPHATLTRIADETDTFTPTDLLERTAHPDHITSRLLLSAADVLEGNTALDTL 179 Query: 189 FRQQLTDLLATRLLSAHAGVPATVQATVGGLAPTALRRVIERLRSDSDADVSLGALAAEA 248 FRQQLTDLLATRLL+AH G + + VGGLAP+ LRR +ERLRSD+DADVSL ALAA++ Sbjct: 180 FRQQLTDLLATRLLAAHTGRAPSYRPAVGGLAPSVLRRAVERLRSDADADVSLAALAADS 239 Query: 249 GLSRFHFCRAFKESTGLSPHAFLRQHRLEQAMNMLRDTDASVVSIAAALGYSSQTAFAAA 308 GLSRFHFCRAFKESTGLSPH +LRQ+RLEQA+NMLRD S+ +AA+LGY+SQTAFAAA Sbjct: 240 GLSRFHFCRAFKESTGLSPHNWLRQYRLEQAINMLRDPQQSIALVAASLGYASQTAFAAA 299 Query: 309 FRKLTGETPSDWRRR 323 FRKLTGETP+DWRRR Sbjct: 300 FRKLTGETPTDWRRR 314 >ref|NP_437692.1| transcriptional regulator, araC family protein [Sinorhizobium meliloti 1021] emb|CAC49552.1| putative transcriptional regulator, araC family protein [Sinorhizobium meliloti 1021] gb|AEG07833.1| transcriptional regulator, AraC family [Sinorhizobium meliloti BL225C] Length = 316 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 203/279 (72%), Positives = 229/279 (82%) Query: 44 EMARVLKTQPLRLAADPSSGAIAYWKHDALHDVVRPMVDHVVMSYPAGSQRLERRTGKVA 103 EM+RVL+T P+ LAADPS GAIA+W H LHDVV PM DHVVM+Y QR+ERR+G+ Sbjct: 35 EMSRVLRTAPIHLAADPSGGAIAHWNHGPLHDVVEPMTDHVVMAYNGTIQRMERRSGRSV 94 Query: 104 SIGTARSGVVTIIPAGSTSRWDIHQSLHVVQLYLPHATLARVAGEADTAAPGDLLERTGH 163 GT R GVV IIPAGS+SRWDI + + VVQLYLPH TL R+A DT P DLLERT H Sbjct: 95 ESGTFRRGVVIIIPAGSSSRWDIPKPVDVVQLYLPHTTLTRIAEATDTFTPTDLLERTAH 154 Query: 164 PDPITSRLLLSAADALEGSAALDALFRQQLTDLLATRLLSAHAGVPATVQATVGGLAPTA 223 PDPITSRLLLSAAD LEG+ ALD LFRQQLTDLLATRLL+AH G + Q VGGLAP Sbjct: 155 PDPITSRLLLSAADVLEGNRALDTLFRQQLTDLLATRLLAAHTGKAPSYQPAVGGLAPNV 214 Query: 224 LRRVIERLRSDSDADVSLGALAAEAGLSRFHFCRAFKESTGLSPHAFLRQHRLEQAMNML 283 LRR IERLRSDSDADVSL ALAA++GLSRFHFCRAFKESTGLSPH +LRQ+RLEQA+NML Sbjct: 215 LRRAIERLRSDSDADVSLAALAADSGLSRFHFCRAFKESTGLSPHNWLRQYRLEQAINML 274 Query: 284 RDTDASVVSIAAALGYSSQTAFAAAFRKLTGETPSDWRR 322 R+ SV S+AA+LGY+SQTAFAAAFRKLTGETP++WRR Sbjct: 275 RNPANSVASVAASLGYNSQTAFAAAFRKLTGETPTEWRR 313 >ref|YP_004557114.1| AraC family transcriptional regulator [Sinorhizobium meliloti AK83] gb|AEG56234.1| transcriptional regulator, AraC family [Sinorhizobium meliloti AK83] gb|AEH83279.1| putative transcriptional regulator, araC family protein [Sinorhizobium meliloti SM11] Length = 316 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 202/279 (72%), Positives = 229/279 (82%) Query: 44 EMARVLKTQPLRLAADPSSGAIAYWKHDALHDVVRPMVDHVVMSYPAGSQRLERRTGKVA 103 EM+RVL+T P+ LAADPS GAIA+W H LHDVV PM DHVVM+Y QR+ERR+G+ Sbjct: 35 EMSRVLRTAPIHLAADPSGGAIAHWNHGPLHDVVEPMTDHVVMAYNGTIQRMERRSGRSV 94 Query: 104 SIGTARSGVVTIIPAGSTSRWDIHQSLHVVQLYLPHATLARVAGEADTAAPGDLLERTGH 163 GT R GVV IIPAGS+SRWDI + + VVQLYLPH TL R+A DT P DLLERT H Sbjct: 95 ESGTFRRGVVIIIPAGSSSRWDIPKPVDVVQLYLPHTTLTRIAEATDTFTPTDLLERTAH 154 Query: 164 PDPITSRLLLSAADALEGSAALDALFRQQLTDLLATRLLSAHAGVPATVQATVGGLAPTA 223 PDPITSRLLLSAAD LEG+ ALD LFRQQLTDLLATRLL+AH G + Q VGGLAP Sbjct: 155 PDPITSRLLLSAADVLEGNRALDTLFRQQLTDLLATRLLAAHTGKAPSYQPAVGGLAPNV 214 Query: 224 LRRVIERLRSDSDADVSLGALAAEAGLSRFHFCRAFKESTGLSPHAFLRQHRLEQAMNML 283 LRR IERLRSD+DADVSL ALAA++GLSRFHFCRAFKESTGLSPH +LRQ+RLEQA+NML Sbjct: 215 LRRAIERLRSDADADVSLAALAADSGLSRFHFCRAFKESTGLSPHNWLRQYRLEQAINML 274 Query: 284 RDTDASVVSIAAALGYSSQTAFAAAFRKLTGETPSDWRR 322 R+ SV S+AA+LGY+SQTAFAAAFRKLTGETP++WRR Sbjct: 275 RNPANSVASVAASLGYNSQTAFAAAFRKLTGETPTEWRR 313