BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0096.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239595.1| hypothetical protein BBta_3600 [Bradyrhizobi... 500 e-140 ref|YP_001205187.1| hypothetical protein BRADO3154 [Bradyrhizobi... 498 e-139 ref|NP_769801.1| hypothetical protein blr3161 [Bradyrhizobium ja... 496 e-138 ref|ZP_07028399.1| conserved hypothetical protein [Afipia sp. 1N... 460 e-128 ref|YP_002288199.1| trap-t family transporter periplasmic bindin... 450 e-124 >ref|YP_001239595.1| hypothetical protein BBta_3600 [Bradyrhizobium sp. BTAi1] gb|ABQ35689.1| hypothetical protein BBta_3600 [Bradyrhizobium sp. BTAi1] Length = 308 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 250/273 (91%), Positives = 264/273 (96%) Query: 2 QQALVASSVARSVQVTNVPGAGGSVGIAQFVNGAKGDGNQMMVNGFVMVGALAMNKSPVT 61 QQA VAS VARSVQVTNV GAGG+VGIAQFVNGAKGDGNQ+MVNGFVMVGALAMNKSPVT Sbjct: 36 QQAFVASGVARSVQVTNVAGAGGTVGIAQFVNGAKGDGNQLMVNGFVMVGALAMNKSPVT 95 Query: 62 LDQVTPIARLTEETQVIVVPANSPIKTAQDLAAAVKADIAKVTFAGGSAGGVDHVMAALF 121 L+QVTPIARLTEE QVIVVPANSPIKTAQDLAAA+KADIAKVTFAGGSAGGVDHVMAALF Sbjct: 96 LEQVTPIARLTEEIQVIVVPANSPIKTAQDLAAALKADIAKVTFAGGSAGGVDHVMAALF 155 Query: 122 AGTVGADAKKINYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIKAGKLRALGVTSANR 181 AGTVGADAKK+NYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIK+GKLRA+GV+S NR Sbjct: 156 AGTVGADAKKVNYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIKSGKLRAIGVSSENR 215 Query: 182 LPGVDIPTFKEQGIDLVLANWRSVVAPPGITPEQRKVLSDAVEKMVKSDAWKEILKQKGW 241 +PGVDIPTFKEQGIDLVLANWRSVVAPPGITPEQ+K L+DAVEKMVKSDAWK+ILKQKGW Sbjct: 216 IPGVDIPTFKEQGIDLVLANWRSVVAPPGITPEQKKTLADAVEKMVKSDAWKDILKQKGW 275 Query: 242 DDAYLGGDAFADFLKKEITRVTEVLKSVGLVKS 274 DDAYL GDAFA+FLKKE RVT+VLKSVGLVKS Sbjct: 276 DDAYLPGDAFAEFLKKENIRVTDVLKSVGLVKS 308 >ref|YP_001205187.1| hypothetical protein BRADO3154 [Bradyrhizobium sp. ORS 278] emb|CAL76952.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 308 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/273 (90%), Positives = 262/273 (95%) Query: 2 QQALVASSVARSVQVTNVPGAGGSVGIAQFVNGAKGDGNQMMVNGFVMVGALAMNKSPVT 61 QQA VAS VARSVQVTNV GAGG+VGIAQFVNGAKGDGNQ+MVNGFVMVGALAMNKSPVT Sbjct: 36 QQAFVASGVARSVQVTNVAGAGGTVGIAQFVNGAKGDGNQLMVNGFVMVGALAMNKSPVT 95 Query: 62 LDQVTPIARLTEETQVIVVPANSPIKTAQDLAAAVKADIAKVTFAGGSAGGVDHVMAALF 121 L+QVTPIARLTEE QVIVVPANSPIK+AQDLAAA+KADIAKVTFAGGSAGGVDHVMAALF Sbjct: 96 LEQVTPIARLTEEIQVIVVPANSPIKSAQDLAAALKADIAKVTFAGGSAGGVDHVMAALF 155 Query: 122 AGTVGADAKKINYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIKAGKLRALGVTSANR 181 AGTVGADAKK+NYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIK+GKLRA+G++S NR Sbjct: 156 AGTVGADAKKVNYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIKSGKLRAIGISSENR 215 Query: 182 LPGVDIPTFKEQGIDLVLANWRSVVAPPGITPEQRKVLSDAVEKMVKSDAWKEILKQKGW 241 + GVDIPTFKEQGIDLVLANWRSVV PPGITPEQ+K L+DAVEKMVKSDAWKEILKQKGW Sbjct: 216 IAGVDIPTFKEQGIDLVLANWRSVVGPPGITPEQKKTLADAVEKMVKSDAWKEILKQKGW 275 Query: 242 DDAYLGGDAFADFLKKEITRVTEVLKSVGLVKS 274 DDAYL GDAFADFLKKE RVT+VLKSVGLVKS Sbjct: 276 DDAYLAGDAFADFLKKEKVRVTDVLKSVGLVKS 308 >ref|NP_769801.1| hypothetical protein blr3161 [Bradyrhizobium japonicum USDA 110] dbj|BAC48426.1| blr3161 [Bradyrhizobium japonicum USDA 110] Length = 344 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 248/273 (90%), Positives = 261/273 (95%) Query: 2 QQALVASSVARSVQVTNVPGAGGSVGIAQFVNGAKGDGNQMMVNGFVMVGALAMNKSPVT 61 QQALVA+ VARSVQVTNVPGAGGSVGIAQFVNGAKGDGNQ+MVNGFVMVGALAMNKSPVT Sbjct: 72 QQALVAAGVARSVQVTNVPGAGGSVGIAQFVNGAKGDGNQLMVNGFVMVGALAMNKSPVT 131 Query: 62 LDQVTPIARLTEETQVIVVPANSPIKTAQDLAAAVKADIAKVTFAGGSAGGVDHVMAALF 121 L+QVTPIARLTEE QVIVVPANSPIKTAQDLAAAVKADIAKVTFAGGSAGGVDHVMAALF Sbjct: 132 LEQVTPIARLTEEIQVIVVPANSPIKTAQDLAAAVKADIAKVTFAGGSAGGVDHVMAALF 191 Query: 122 AGTVGADAKKINYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIKAGKLRALGVTSANR 181 AG VGADAKKINYIPFSGGGESLAAILGGKVTAGISG+SEY+GQIK+GKLRA+GVTS R Sbjct: 192 AGAVGADAKKINYIPFSGGGESLAAILGGKVTAGISGMSEYEGQIKSGKLRAIGVTSEKR 251 Query: 182 LPGVDIPTFKEQGIDLVLANWRSVVAPPGITPEQRKVLSDAVEKMVKSDAWKEILKQKGW 241 + G DIPTFKEQGIDLV+ANWRSVVAPPGIT EQRK L DAVEKMVKSDAWK+ILKQKGW Sbjct: 252 IAGSDIPTFKEQGIDLVIANWRSVVAPPGITAEQRKTLGDAVEKMVKSDAWKDILKQKGW 311 Query: 242 DDAYLGGDAFADFLKKEITRVTEVLKSVGLVKS 274 +DAYLGGDAFADFLKKE RVT+VL+SVGLVKS Sbjct: 312 EDAYLGGDAFADFLKKETVRVTDVLRSVGLVKS 344 >ref|ZP_07028399.1| conserved hypothetical protein [Afipia sp. 1NLS2] gb|EFI50389.1| conserved hypothetical protein [Afipia sp. 1NLS2] Length = 328 Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/273 (82%), Positives = 254/273 (93%) Query: 2 QQALVASSVARSVQVTNVPGAGGSVGIAQFVNGAKGDGNQMMVNGFVMVGALAMNKSPVT 61 QQALVA+ +ARSVQVTNV GAGGSVGIAQFVN AKGDG+Q+MVNGFVMVGALAMNKSPVT Sbjct: 56 QQALVAAGIARSVQVTNVGGAGGSVGIAQFVNSAKGDGSQLMVNGFVMVGALAMNKSPVT 115 Query: 62 LDQVTPIARLTEETQVIVVPANSPIKTAQDLAAAVKADIAKVTFAGGSAGGVDHVMAALF 121 LDQVTPIARLT+E QV+VVPANSPIK +DL A+KA+IAKVTFAGGSAGG+DH+MAALF Sbjct: 116 LDQVTPIARLTDEYQVMVVPANSPIKNLKDLGDALKANIAKVTFAGGSAGGIDHIMAALF 175 Query: 122 AGTVGADAKKINYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIKAGKLRALGVTSANR 181 AG+VGADA K+NY+PFSGGGESLAAILGGKVTAGISG SEY+GQIK+GKLRA+G+TS+ R Sbjct: 176 AGSVGADAAKVNYVPFSGGGESLAAILGGKVTAGISGYSEYEGQIKSGKLRAIGITSSER 235 Query: 182 LPGVDIPTFKEQGIDLVLANWRSVVAPPGITPEQRKVLSDAVEKMVKSDAWKEILKQKGW 241 PG+DIPTFKEQGIDLVLANWRSVVAPPGITPEQ+KVL+DA++++VKS AWKE+L QKGW Sbjct: 236 RPGIDIPTFKEQGIDLVLANWRSVVAPPGITPEQKKVLADAIDRLVKSPAWKEVLAQKGW 295 Query: 242 DDAYLGGDAFADFLKKEITRVTEVLKSVGLVKS 274 +DAYL GDAFADFLKKE RV VLKS+GL+KS Sbjct: 296 EDAYLPGDAFADFLKKEAVRVNGVLKSIGLLKS 328 >ref|YP_002288199.1| trap-t family transporter periplasmic binding protein [Oligotropha carboxidovorans OM5] ref|YP_004633701.1| hypothetical protein OCA5_c27670 [Oligotropha carboxidovorans OM5] gb|ACI92334.1| trap-t family transporter, periplasmic binding protein [Oligotropha carboxidovorans OM5] gb|AEI03883.1| hypothetical protein OCA4_c27660 [Oligotropha carboxidovorans OM4] gb|AEI07460.1| hypothetical protein OCA5_c27670 [Oligotropha carboxidovorans OM5] Length = 329 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 228/273 (83%), Positives = 254/273 (93%) Query: 2 QQALVASSVARSVQVTNVPGAGGSVGIAQFVNGAKGDGNQMMVNGFVMVGALAMNKSPVT 61 QQALVAS VARSVQVTNV GAGGSVGIAQFVN AKGDG+Q+MVNGFVMVGALAMNKSPVT Sbjct: 57 QQALVASGVARSVQVTNVGGAGGSVGIAQFVNSAKGDGSQLMVNGFVMVGALAMNKSPVT 116 Query: 62 LDQVTPIARLTEETQVIVVPANSPIKTAQDLAAAVKADIAKVTFAGGSAGGVDHVMAALF 121 LDQVTPIARLT+E QV+VVPANSPIK +DLA A+KA+IAKVTFAGGSAGG+DH+MAAL Sbjct: 117 LDQVTPIARLTDEYQVMVVPANSPIKNVKDLADALKANIAKVTFAGGSAGGIDHIMAALL 176 Query: 122 AGTVGADAKKINYIPFSGGGESLAAILGGKVTAGISGLSEYDGQIKAGKLRALGVTSANR 181 AG VGADA K+NY+PFSGGGESLAAILGGKVTAGISG SEY+GQIK+GKLRA+G+TS+ R Sbjct: 177 AGAVGADATKVNYVPFSGGGESLAAILGGKVTAGISGYSEYEGQIKSGKLRAIGITSSER 236 Query: 182 LPGVDIPTFKEQGIDLVLANWRSVVAPPGITPEQRKVLSDAVEKMVKSDAWKEILKQKGW 241 PGVD+PTFKEQG+DLVLANWRSVVAPPGITPEQ+KVL+DA++++VKS AWKE+L QKGW Sbjct: 237 RPGVDVPTFKEQGVDLVLANWRSVVAPPGITPEQKKVLADAIDRLVKSPAWKEVLTQKGW 296 Query: 242 DDAYLGGDAFADFLKKEITRVTEVLKSVGLVKS 274 DDAYL GDAFADFLKKE RV EVLKS+GLVKS Sbjct: 297 DDAYLPGDAFADFLKKEAVRVNEVLKSIGLVKS 329