BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0091.p         (256 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA38450.1| glycine hydroxymethyltransferase [Bradyrhizobium...   499   e-139
ref|NP_771673.1| serine hydroxymethyltransferase [Bradyrhizobium...   499   e-139
ref|YP_781725.1| serine hydroxymethyltransferase [Rhodopseudomon...   486   e-135
ref|YP_532528.1| serine hydroxymethyltransferase [Rhodopseudomon...   485   e-135
ref|YP_569801.2| serine hydroxymethyltransferase [Rhodopseudomon...   485   e-135

>emb|CAA38450.1| glycine hydroxymethyltransferase [Bradyrhizobium japonicum]
          Length = 432

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/255 (94%), Positives = 250/255 (98%)

Query: 2   PKLIIAGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVPHAHVTTTT 61
           PKLI+AGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVP+AHVTTTT
Sbjct: 178 PKLIVAGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVPYAHVTTTT 237

Query: 62  THKSLRGPRGGLILTNDETLARKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPDFKVYA 121
           THKSLRGPRGGLIL+NDETLA+KLNSAIFPGLQGGPLMHVIAAKAVAF EALRPDFKVYA
Sbjct: 238 THKSLRGPRGGLILSNDETLAKKLNSAIFPGLQGGPLMHVIAAKAVAFGEALRPDFKVYA 297

Query: 122 KNVVENAKALAETLRGHGLDIVSGGTDNHLMLVDLRPKGLKGNISEKALVRAAITCNKNG 181
           KNVVENAKALAE ++ HG DIVSGGTDNHLMLVDLRPKGLKGN+SEKALVRAAITCNKNG
Sbjct: 298 KNVVENAKALAEAMKSHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNG 357

Query: 182 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVGGMIAEVLNALAQSPDGKAPLVEAAI 241
           IPFDPEKPFVTSGLRLGTPAATTRGFGVAEF+QVGGMIAEVLNA+AQS DGKAPLVEAAI
Sbjct: 358 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGGMIAEVLNAIAQSDDGKAPLVEAAI 417

Query: 242 KERVKALTDRFPIYQ 256
           KERVKALTDRFPIYQ
Sbjct: 418 KERVKALTDRFPIYQ 432


>ref|NP_771673.1| serine hydroxymethyltransferase [Bradyrhizobium japonicum USDA 110]
 sp|P24060.2|GLYA_BRAJA RecName: Full=Serine hydroxymethyltransferase; Short=SHMT;
           Short=Serine methylase
 dbj|BAC50298.1| glycine hydroxymethyltransferase [Bradyrhizobium japonicum USDA
           110]
          Length = 432

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 241/255 (94%), Positives = 250/255 (98%)

Query: 2   PKLIIAGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVPHAHVTTTT 61
           PKLI+AGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVP+AHVTTTT
Sbjct: 178 PKLIVAGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVPYAHVTTTT 237

Query: 62  THKSLRGPRGGLILTNDETLARKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPDFKVYA 121
           THKSLRGPRGGLIL+NDETLA+KLNSAIFPGLQGGPLMHVIAAKAVAF EALRPDFKVYA
Sbjct: 238 THKSLRGPRGGLILSNDETLAKKLNSAIFPGLQGGPLMHVIAAKAVAFGEALRPDFKVYA 297

Query: 122 KNVVENAKALAETLRGHGLDIVSGGTDNHLMLVDLRPKGLKGNISEKALVRAAITCNKNG 181
           KNVVENAKALAE ++ HG DIVSGGTDNHLMLVDLRPKGLKGN+SEKALVRAAITCNKNG
Sbjct: 298 KNVVENAKALAEAMKSHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNG 357

Query: 182 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVGGMIAEVLNALAQSPDGKAPLVEAAI 241
           IPFDPEKPFVTSGLRLGTPAATTRGFGVAEF+QVGGMIAEVLNA+AQS DGKAPLVEAAI
Sbjct: 358 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFQQVGGMIAEVLNAIAQSDDGKAPLVEAAI 417

Query: 242 KERVKALTDRFPIYQ 256
           KERVKALTDRFPIYQ
Sbjct: 418 KERVKALTDRFPIYQ 432


>ref|YP_781725.1| serine hydroxymethyltransferase [Rhodopseudomonas palustris BisA53]
 sp|Q07MT9.1|GLYA_RHOP5 RecName: Full=Serine hydroxymethyltransferase; Short=SHMT;
           Short=Serine methylase
 gb|ABJ06745.1| serine hydroxymethyltransferase [Rhodopseudomonas palustris BisA53]
          Length = 433

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/254 (91%), Positives = 243/254 (95%)

Query: 2   PKLIIAGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVPHAHVTTTT 61
           PKLIIAGGSAYSRAWDFKRFREIADSVGAY +VDMAHFAGLVAGGVHASPVPHAHV TTT
Sbjct: 179 PKLIIAGGSAYSRAWDFKRFREIADSVGAYFMVDMAHFAGLVAGGVHASPVPHAHVCTTT 238

Query: 62  THKSLRGPRGGLILTNDETLARKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPDFKVYA 121
           THKSLRGPRGGLIL NDE LA+K NSAIFPGLQGGPLMHVIAAKAVAF EAL+PDFKVYA
Sbjct: 239 THKSLRGPRGGLILCNDEALAKKFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYA 298

Query: 122 KNVVENAKALAETLRGHGLDIVSGGTDNHLMLVDLRPKGLKGNISEKALVRAAITCNKNG 181
           KNVVENAKALAETLRGHG DIVSGGTDNHLMLVDLRPK LKGN+SEKALVRA ITCNKNG
Sbjct: 299 KNVVENAKALAETLRGHGFDIVSGGTDNHLMLVDLRPKALKGNVSEKALVRAGITCNKNG 358

Query: 182 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVGGMIAEVLNALAQSPDGKAPLVEAAI 241
           IPFDPEKPFVTSG+RLGTPAATTRGFGVAEF+QVGGMIAEVLNA+AQS DG+APLVEAAI
Sbjct: 359 IPFDPEKPFVTSGIRLGTPAATTRGFGVAEFQQVGGMIAEVLNAIAQSSDGQAPLVEAAI 418

Query: 242 KERVKALTDRFPIY 255
           ++RVK LTDRFPIY
Sbjct: 419 RQRVKELTDRFPIY 432


>ref|YP_532528.1| serine hydroxymethyltransferase [Rhodopseudomonas palustris BisB18]
 sp|Q214H7.1|GLYA_RHOPB RecName: Full=Serine hydroxymethyltransferase; Short=SHMT;
           Short=Serine methylase
 gb|ABD88209.1| serine hydroxymethyltransferase [Rhodopseudomonas palustris BisB18]
          Length = 440

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/255 (91%), Positives = 243/255 (95%)

Query: 2   PKLIIAGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVPHAHVTTTT 61
           PKLIIAGGSAYSRAWDFKRFREIADSVGAY +VDMAHFAGLVAGGVHA+PVPHAHV TTT
Sbjct: 186 PKLIIAGGSAYSRAWDFKRFREIADSVGAYFMVDMAHFAGLVAGGVHANPVPHAHVVTTT 245

Query: 62  THKSLRGPRGGLILTNDETLARKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPDFKVYA 121
           THKSLRGPRGGLILTNDE LA+K NSAIFPGLQGGPLMHVIAAKAVAF EAL+PDFKVYA
Sbjct: 246 THKSLRGPRGGLILTNDEALAKKFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYA 305

Query: 122 KNVVENAKALAETLRGHGLDIVSGGTDNHLMLVDLRPKGLKGNISEKALVRAAITCNKNG 181
           KNVVENAKALAETLRGHG DIVSGGTDNHLMLVDLRPK LKGN+SEKALVRA ITCNKNG
Sbjct: 306 KNVVENAKALAETLRGHGFDIVSGGTDNHLMLVDLRPKSLKGNVSEKALVRAGITCNKNG 365

Query: 182 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVGGMIAEVLNALAQSPDGKAPLVEAAI 241
           IP+DPEKPFVTSG+RLGTPAATTRGFGVAEF+QVGGMIAEVLNA+AQS DG APLVEAA+
Sbjct: 366 IPYDPEKPFVTSGIRLGTPAATTRGFGVAEFQQVGGMIAEVLNAIAQSEDGTAPLVEAAV 425

Query: 242 KERVKALTDRFPIYQ 256
           K RVK LTDRFPIYQ
Sbjct: 426 KARVKELTDRFPIYQ 440


>ref|YP_569801.2| serine hydroxymethyltransferase [Rhodopseudomonas palustris BisB5]
          Length = 433

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/255 (91%), Positives = 243/255 (95%)

Query: 2   PKLIIAGGSAYSRAWDFKRFREIADSVGAYLLVDMAHFAGLVAGGVHASPVPHAHVTTTT 61
           PKLIIAGGSAYSRAWDFKRFREIADSVGAY +VDMAHFAGLVAGG HASPVPHAHV TTT
Sbjct: 179 PKLIIAGGSAYSRAWDFKRFREIADSVGAYFMVDMAHFAGLVAGGAHASPVPHAHVVTTT 238

Query: 62  THKSLRGPRGGLILTNDETLARKLNSAIFPGLQGGPLMHVIAAKAVAFAEALRPDFKVYA 121
           THKSLRGPRGGLIL+NDE LA+K NSAIFPGLQGGPLMHVIAAKAVAF EAL+PDFKVYA
Sbjct: 239 THKSLRGPRGGLILSNDEALAKKFNSAIFPGLQGGPLMHVIAAKAVAFKEALQPDFKVYA 298

Query: 122 KNVVENAKALAETLRGHGLDIVSGGTDNHLMLVDLRPKGLKGNISEKALVRAAITCNKNG 181
           KNVVENAKALAETLR  G D+VSGGTDNHLMLVDLRPKGLKGN+SEKALVRAAITCNKNG
Sbjct: 299 KNVVENAKALAETLRAAGFDLVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAAITCNKNG 358

Query: 182 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVGGMIAEVLNALAQSPDGKAPLVEAAI 241
           IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVG +IAEVLNA+AQSPDG APLVEA++
Sbjct: 359 IPFDPEKPFVTSGLRLGTPAATTRGFGVAEFKQVGNLIAEVLNAIAQSPDGTAPLVEASV 418

Query: 242 KERVKALTDRFPIYQ 256
           KERVK LTDRFPIYQ
Sbjct: 419 KERVKDLTDRFPIYQ 433