BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0089.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771671.1| riboflavin biosynthesis protein [Bradyrhizobium... 582 e-164 ref|YP_001206392.1| bifunctional diaminohydroxyphosphoribosylami... 579 e-163 ref|ZP_08630192.1| diaminohydroxyphosphoribosylaminopyrimidine d... 573 e-161 ref|YP_001240581.1| 5-amino-6-(5-phosphoribosylamino)uracil redu... 566 e-159 ref|YP_577090.1| riboflavin biosynthesis protein RibD [Nitrobact... 545 e-153 >ref|NP_771671.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50296.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 304/386 (78%), Positives = 338/386 (87%), Gaps = 4/386 (1%) Query: 1 MIFRILEDQFAQKAKEAKEAAKAADLRFMQLALALGRRGLGRTWPNPAVGAVIVKDGVIV 60 MIFRILEDQFAQK +E+K+A D RFMQLALALGRRG GRTWPNPAVGAVIVKDGVIV Sbjct: 1 MIFRILEDQFAQKIRESKDA----DRRFMQLALALGRRGQGRTWPNPAVGAVIVKDGVIV 56 Query: 61 GRGWTQAGGRPHAEVEALRRAGDAARGATLYVTLEPCSHFGRSPPCADAVVAAGLARVVS 120 GRGWTQ GGRPH E EALRRAG+AARGATLYVTLEPCSHFG+SPPCADAV+AAG+ RVV+ Sbjct: 57 GRGWTQPGGRPHGEPEALRRAGEAARGATLYVTLEPCSHFGKSPPCADAVIAAGIKRVVA 116 Query: 121 AIEDPNPEVAGQGHAKLRAAGIAVDVGLCAAEAARDHAGHFRRIRDKRPHVILKLAVSAD 180 AIEDPNPEVAGQGHA+LRAAGI VDVGLCAAEAA DHAGHFRRIRD+RPHVILKLAVS D Sbjct: 117 AIEDPNPEVAGQGHARLRAAGITVDVGLCAAEAAFDHAGHFRRIRDRRPHVILKLAVSPD 176 Query: 181 DKIAASGHKPVAISGEAARTRVHLLRAQSDAILVGIGTVKADDPLLTCRLPGMAARSPVR 240 KI A+G KPVAI+GEA R RVHLLRAQSDAILVGIGTV ADDPLLTCRLPGMAARSPVR Sbjct: 177 GKIGAAGGKPVAITGEAVRNRVHLLRAQSDAILVGIGTVLADDPLLTCRLPGMAARSPVR 236 Query: 241 LVLDRALRISGDSRLVHSARETPLWVLTSDMAEAPAAVKLGAAGAQVIRVTASAPQGLDL 300 +VLD++LR+S S+LV SARETPLWV+ S++AEA AA +LGAAGAQ+IRV GLDL Sbjct: 237 VVLDQSLRMSAASQLVRSARETPLWVVGSELAEAAAATRLGAAGAQIIRVPPGNASGLDL 296 Query: 301 PSVLHALAEKGISRLLVEGGSRVANSFVAGGLVDEIWLLRGPDAIGAGGVPALDAMPLDA 360 P+VLH LAEKGISRL+VEGGSRVA SFVA LVDEIWL RG + +G+ GV ALDA+PL Sbjct: 297 PAVLHVLAEKGISRLMVEGGSRVAASFVAADLVDEIWLFRGAEEVGSSGVDALDALPLSK 356 Query: 361 ITQSPAFRLRASETLGEDVLTIYDRS 386 ITQS A+++ ASET +D LTIY+R+ Sbjct: 357 ITQSQAYKVHASETFDKDTLTIYERA 382 >ref|YP_001206392.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Bradyrhizobium sp. ORS 278] emb|CAL78171.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bradyrhizobium sp. ORS 278] Length = 383 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 293/386 (75%), Positives = 331/386 (85%), Gaps = 5/386 (1%) Query: 1 MIFRILEDQFAQKAKEAKEAAKAADLRFMQLALALGRRGLGRTWPNPAVGAVIVKDGVIV 60 MIFR+L DQ +K K A K AD RFMQLAL LGRRG GRTWPNPAVGAV+VKDGVIV Sbjct: 1 MIFRVLVDQVGEKLK----AQKDADRRFMQLALTLGRRGQGRTWPNPAVGAVVVKDGVIV 56 Query: 61 GRGWTQAGGRPHAEVEALRRAGDAARGATLYVTLEPCSHFGRSPPCADAVVAAGLARVVS 120 GRGWTQ GGRPHAE EALRRAG+AA+GATLYVTLEPCSHFG+SPPCADAV+AAG++RVVS Sbjct: 57 GRGWTQPGGRPHAEPEALRRAGEAAKGATLYVTLEPCSHFGKSPPCADAVIAAGISRVVS 116 Query: 121 AIEDPNPEVAGQGHAKLRAAGIAVDVGLCAAEAARDHAGHFRRIRDKRPHVILKLAVSAD 180 A+EDPNPEVA QGHAKLRAAGI V+VGLC+A+A RDHAGHFRRIRD RP VILKLAVSAD Sbjct: 117 AVEDPNPEVAAQGHAKLRAAGIQVEVGLCSADAKRDHAGHFRRIRDGRPQVILKLAVSAD 176 Query: 181 DKIAASGHKPVAISGEAARTRVHLLRAQSDAILVGIGTVKADDPLLTCRLPGMAARSPVR 240 DKIAA+G KPVAI+GEAARTRVHLLRAQSDAIL+G+ T ADDPLLTCRLPGM RSPVR Sbjct: 177 DKIAAAGSKPVAITGEAARTRVHLLRAQSDAILIGVRTAIADDPLLTCRLPGMEPRSPVR 236 Query: 241 LVLDRALRISGDSRLVHSARETPLWVLTSDMAEAPAAVKLGAAGAQVIRVTASA-PQGLD 299 +VLD LR+ SRL+ SAR TPLW++ S++AE A +LGAAGAQVIRV A P L+ Sbjct: 237 VVLDPMLRLPSASRLIQSARTTPLWLVASEVAEPATATRLGAAGAQVIRVPPQADPSALE 296 Query: 300 LPSVLHALAEKGISRLLVEGGSRVANSFVAGGLVDEIWLLRGPDAIGAGGVPALDAMPLD 359 P+VL ALAEKGI+RL++EGGSRVA+SF+ GLVDEIWLLRGP IGA G+ ALDA+PL Sbjct: 297 PPAVLKALAEKGITRLMIEGGSRVASSFMQSGLVDEIWLLRGPREIGADGIAALDALPLT 356 Query: 360 AITQSPAFRLRASETLGEDVLTIYDR 385 AITQSPA+R+RASETL D+LTIY+R Sbjct: 357 AITQSPAYRVRASETLDPDILTIYER 382 >ref|ZP_08630192.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07065.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bradyrhizobiaceae bacterium SG-6C] Length = 367 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 290/364 (79%), Positives = 327/364 (89%), Gaps = 2/364 (0%) Query: 25 DLRFMQLALALGRRGLGRTWPNPAVGAVIVKDGVIVGRGWTQAGGRPHAEVEALRRAGDA 84 D R+MQLALALGRRG GRTWPNPAVGAVIVKDGVIVGRGWTQ GGRPHAE +ALRRAG+A Sbjct: 4 DFRYMQLALALGRRGQGRTWPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEPDALRRAGEA 63 Query: 85 ARGATLYVTLEPCSHFGRSPPCADAVVAAGLARVVSAIEDPNPEVAGQGHAKLRAAGIAV 144 ARGATLYVTLEPCSHFG+SPPCADAV+AAG+ARVVSAIEDPNPEV GQGHA+LRAAGIAV Sbjct: 64 ARGATLYVTLEPCSHFGKSPPCADAVIAAGIARVVSAIEDPNPEVGGQGHARLRAAGIAV 123 Query: 145 DVGLCAAEAARDHAGHFRRIRDKRPHVILKLAVSADDKIAASGHKPVAISGEAARTRVHL 204 DVGLC EAARDHAGHF R+ KRP VILKLAVSADDKIAA+GHKPVAI+GEAA+ RVHL Sbjct: 124 DVGLCKDEAARDHAGHFLRVGAKRPFVILKLAVSADDKIAAAGHKPVAITGEAAKARVHL 183 Query: 205 LRAQSDAILVGIGTVKADDPLLTCRLPGMAARSPVRLVLDRALRISGDSRLVHSARETPL 264 LRAQSDAILVGIGTV ADDPLLT RLPG+ ARSPVR+VLDRALR+ G S+LVHSAR+T L Sbjct: 184 LRAQSDAILVGIGTVLADDPLLTVRLPGLEARSPVRVVLDRALRLPGTSKLVHSARQTLL 243 Query: 265 WVLTSDMAEAPAAVKLGAAGAQVIR--VTASAPQGLDLPSVLHALAEKGISRLLVEGGSR 322 WV+TSD++EAPAA+KLGAAGAQVIR V+ +P GLDL SVL+ LAE+GI+RL+VEGG+R Sbjct: 244 WVMTSDISEAPAAMKLGAAGAQVIRAPVSDGSPPGLDLRSVLNTLAERGITRLMVEGGAR 303 Query: 323 VANSFVAGGLVDEIWLLRGPDAIGAGGVPALDAMPLDAITQSPAFRLRASETLGEDVLTI 382 VA+SF++ GLVDE+WLLRGPDAIG G+PALD PL IT+SP +R RA+E L +D LTI Sbjct: 304 VASSFLSAGLVDEVWLLRGPDAIGMDGIPALDTQPLSVITRSPRWRARATEMLDKDSLTI 363 Query: 383 YDRS 386 Y+RS Sbjct: 364 YERS 367 >ref|YP_001240581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bradyrhizobium sp. BTAi1] gb|ABQ36675.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium sp. BTAi1] Length = 383 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 293/387 (75%), Positives = 332/387 (85%), Gaps = 5/387 (1%) Query: 1 MIFRILEDQFAQKAKEAKEAAKAADLRFMQLALALGRRGLGRTWPNPAVGAVIVKDGVIV 60 MIFR+L DQ +K K A K AD RFMQLALALGRRG GRTWPNPAVGAV+VKDGVIV Sbjct: 1 MIFRVLVDQVGEKLK----AQKDADRRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVIV 56 Query: 61 GRGWTQAGGRPHAEVEALRRAGDAARGATLYVTLEPCSHFGRSPPCADAVVAAGLARVVS 120 GRGWTQ GGRPHAE EALRRAG A +GATLYV+LEPCSHFG+SPPCADAV+AAG++RVVS Sbjct: 57 GRGWTQPGGRPHAEPEALRRAGAATKGATLYVSLEPCSHFGKSPPCADAVIAAGISRVVS 116 Query: 121 AIEDPNPEVAGQGHAKLRAAGIAVDVGLCAAEAARDHAGHFRRIRDKRPHVILKLAVSAD 180 AIEDPNPEV+GQGHA+LRAAGI V+VGLC+A+A RDHAG FRRIRD RPHVILKLAVSAD Sbjct: 117 AIEDPNPEVSGQGHARLRAAGIQVEVGLCSADAKRDHAGFFRRIRDSRPHVILKLAVSAD 176 Query: 181 DKIAASGHKPVAISGEAARTRVHLLRAQSDAILVGIGTVKADDPLLTCRLPGMAARSPVR 240 DKIAA+G+KPVAI+GEAARTRVHLLRAQSDAIL+G+ T ADDPLLTCRLPGM ARSPVR Sbjct: 177 DKIAAAGNKPVAITGEAARTRVHLLRAQSDAILIGVRTAIADDPLLTCRLPGMEARSPVR 236 Query: 241 LVLDRALRISGDSRLVHSARETPLWVLTSDMAEAPAAVKLGAAGAQVIRVTASA-PQGLD 299 +VLD LR+ SRLV SAR TPLW++ S +AE AA KLGAAGAQVIRV P L+ Sbjct: 237 VVLDPMLRLPMTSRLVQSARTTPLWMIASAVAEPAAATKLGAAGAQVIRVPPQVEPSVLE 296 Query: 300 LPSVLHALAEKGISRLLVEGGSRVANSFVAGGLVDEIWLLRGPDAIGAGGVPALDAMPLD 359 P+VL ALA+KGI+RL++EGGSRVA+SF+ GLVDEIWLLRG IGA G+ ALDA+PL Sbjct: 297 PPAVLKALADKGITRLMIEGGSRVASSFMQSGLVDEIWLLRGAGEIGADGIAALDALPLT 356 Query: 360 AITQSPAFRLRASETLGEDVLTIYDRS 386 AITQSPA+R+RASETL D+LTIY+R+ Sbjct: 357 AITQSPAYRVRASETLDTDILTIYERA 383 >ref|YP_577090.1| riboflavin biosynthesis protein RibD [Nitrobacter hamburgensis X14] gb|ABE62630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter hamburgensis X14] Length = 383 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 291/386 (75%), Positives = 332/386 (86%), Gaps = 5/386 (1%) Query: 1 MIFRILEDQFAQKAKEAKEAAKAADLRFMQLALALGRRGLGRTWPNPAVGAVIVKDGVIV 60 MIFRILE+Q+ +K ++AK A DLRFMQLALALGRR LG + PNPAVGAVIVKD VIV Sbjct: 1 MIFRILEEQYGEKLRKAK----AVDLRFMQLALALGRRSLGASAPNPAVGAVIVKDDVIV 56 Query: 61 GRGWTQAGGRPHAEVEALRRAGDAARGATLYVTLEPCSHFGRSPPCADAVVAAGLARVVS 120 GRGWTQ GGRPHAE EALRRAG+AARGATLYVTLEPCSH G++PPCADAV+AAG+ RVVS Sbjct: 57 GRGWTQPGGRPHAEAEALRRAGEAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVS 116 Query: 121 AIEDPNPEVAGQGHAKLRAAGIAVDVGLCAAEAARDHAGHFRRIRDKRPHVILKLAVSAD 180 AIEDP PEVAGQGHA+LRAAGI+VDVGLCAAEAA HAGHFRRIRDKRPHVILKLAVS+D Sbjct: 117 AIEDPTPEVAGQGHARLRAAGISVDVGLCAAEAAHHHAGHFRRIRDKRPHVILKLAVSSD 176 Query: 181 DKIAASGHKPVAISGEAARTRVHLLRAQSDAILVGIGTVKADDPLLTCRLPGMAARSPVR 240 +IAA+G PVAI+GEAA+ RVHLLRAQ +AILVGIGTV AD+PLLTCRLPGM ARSP+R Sbjct: 177 GRIAAAGGVPVAITGEAAKARVHLLRAQCNAILVGIGTVLADNPLLTCRLPGMEARSPLR 236 Query: 241 LVLDRALRISGDSRLVHSARETPLWVLTSDMAEAPAAVKLGAAGAQVIRV-TASAPQGLD 299 +VLD ALRI DSRLV SARETPLWV+ SD+A+AP A+KLGAAG QV+RV A+ GLD Sbjct: 237 VVLDHALRIPHDSRLVRSARETPLWVMASDLAQAPVAMKLGAAGVQVLRVPVAAGAPGLD 296 Query: 300 LPSVLHALAEKGISRLLVEGGSRVANSFVAGGLVDEIWLLRGPDAIGAGGVPALDAMPLD 359 L ++L AL+E+G++RL+VEGG+RVA+SFVA GLVDE WLLRGPD IG GV AL A+PL Sbjct: 297 LAAILRALSERGVTRLVVEGGARVASSFVAAGLVDEAWLLRGPDPIGDDGVAALGALPLT 356 Query: 360 AITQSPAFRLRASETLGEDVLTIYDR 385 AIT SP FR AS+TL +D L IY+R Sbjct: 357 AITGSPQFRACASKTLDQDTLAIYER 382