BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0086.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486252.1| transcription antitermination protein NusB [Rho... 290 6e-77 ref|NP_771668.1| transcription antitermination protein NusB [Bra... 290 7e-77 ref|YP_569806.1| transcription antitermination protein NusB [Rho... 283 6e-75 ref|YP_577093.1| transcription antitermination protein NusB [Nit... 280 7e-74 ref|YP_532533.1| transcription antitermination protein NusB [Rho... 278 2e-73 >ref|YP_486252.1| transcription antitermination protein NusB [Rhodopseudomonas palustris HaA2] sp|Q2IWR9.1|NUSB_RHOP2 RecName: Full=N utilization substance protein B homolog; Short=Protein NusB gb|ABD07341.1| NusB antitermination factor [Rhodopseudomonas palustris HaA2] Length = 169 Score = 290 bits (741), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 145/168 (86%), Positives = 156/168 (92%), Gaps = 5/168 (2%) Query: 1 MADNKKPA-KAP----DRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEV 55 MAD+KKPA K P DRKANRRGAARLAAVQALYQMDIGGAGIN+ FAEFESHW+GNEV Sbjct: 1 MADSKKPAIKKPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAEFESHWIGNEV 60 Query: 56 EGEKYLPAEAAFFRDVVSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELE 115 EG++YLPAEAAFFRDVVSGVVRDQ +LDPLID+AL+KGWPL RIDAILRAV+RAG+YELE Sbjct: 61 EGDQYLPAEAAFFRDVVSGVVRDQKKLDPLIDDALAKGWPLARIDAILRAVMRAGAYELE 120 Query: 116 HRKDVPGRVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFRGDEFVR 163 HRKD+P RVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFR DEF R Sbjct: 121 HRKDIPARVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFREDEFTR 168 >ref|NP_771668.1| transcription antitermination protein NusB [Bradyrhizobium japonicum USDA 110] sp|Q89K81.1|NUSB_BRAJA RecName: Full=N utilization substance protein B homolog; Short=Protein NusB dbj|BAC50293.1| N-utilization substance protein B [Bradyrhizobium japonicum USDA 110] Length = 165 Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 144/165 (87%), Positives = 155/165 (93%), Gaps = 1/165 (0%) Query: 1 MADN-KKPAKAPDRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEK 59 MADN KKPA ++KANRRGAARLAAVQALYQMDI GAGINDIFAEFESHWLGNEVEG+ Sbjct: 1 MADNNKKPAGLTEKKANRRGAARLAAVQALYQMDIAGAGINDIFAEFESHWLGNEVEGDT 60 Query: 60 YLPAEAAFFRDVVSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKD 119 YLPAEAAFFRDVVSGVVRDQ +LDPLIDEALSKGWPLKRI+AILRAVLRAG+YEL+HRKD Sbjct: 61 YLPAEAAFFRDVVSGVVRDQKKLDPLIDEALSKGWPLKRIEAILRAVLRAGAYELQHRKD 120 Query: 120 VPGRVVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFRGDEFVRS 164 VPGRVVVSEYVDVA+AFV+++ETGMVNAVLDQI RQFRGDEF R Sbjct: 121 VPGRVVVSEYVDVANAFVDREETGMVNAVLDQIGRQFRGDEFGRG 165 >ref|YP_569806.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB5] sp|Q136T4.1|NUSB_RHOPS RecName: Full=N utilization substance protein B homolog; Short=Protein NusB gb|ABE39905.1| NusB antitermination factor [Rhodopseudomonas palustris BisB5] Length = 174 Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 137/160 (85%), Positives = 150/160 (93%), Gaps = 3/160 (1%) Query: 4 NKKPAKAPDRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPA 63 +KKP DRKANRRGAARLAAVQALYQMDIGGAGI+D FAEFESHW+GNEVEG++YLPA Sbjct: 18 DKKPG---DRKANRRGAARLAAVQALYQMDIGGAGIDDTFAEFESHWIGNEVEGDQYLPA 74 Query: 64 EAAFFRDVVSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGR 123 EAAFFRD+VSGVVRDQ +LDPLIDEAL+KGWPL RIDAI+RAV+RAG+YELEHRKD+P R Sbjct: 75 EAAFFRDIVSGVVRDQTKLDPLIDEALAKGWPLARIDAIIRAVMRAGAYELEHRKDIPAR 134 Query: 124 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFRGDEFVR 163 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFR DEF + Sbjct: 135 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFRADEFTK 174 >ref|YP_577093.1| transcription antitermination protein NusB [Nitrobacter hamburgensis X14] sp|Q1QMB4.1|NUSB_NITHX RecName: Full=N utilization substance protein B homolog; Short=Protein NusB gb|ABE62633.1| NusB antitermination factor [Nitrobacter hamburgensis X14] Length = 160 Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 136/152 (89%), Positives = 147/152 (96%) Query: 12 DRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPAEAAFFRDV 71 D+KANRRGAARLAAVQALYQM+IGGAGIND+FAEFESHWLG+EVEG+KYLPAEAAFFRDV Sbjct: 9 DKKANRRGAARLAAVQALYQMEIGGAGINDVFAEFESHWLGSEVEGDKYLPAEAAFFRDV 68 Query: 72 VSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGRVVVSEYVD 131 V+GVVRDQARLDPLID+ALS+GWPLKRIDAILRAVLRAGSYELEHRKDVP RVVVSEYVD Sbjct: 69 VAGVVRDQARLDPLIDDALSRGWPLKRIDAILRAVLRAGSYELEHRKDVPARVVVSEYVD 128 Query: 132 VAHAFVEKDETGMVNAVLDQIARQFRGDEFVR 163 VAHAF+EK+E GMVNAVLDQIAR+FR EF R Sbjct: 129 VAHAFIEKEEVGMVNAVLDQIARRFRAGEFAR 160 >ref|YP_532533.1| transcription antitermination protein NusB [Rhodopseudomonas palustris BisB18] sp|Q214H2.1|NUSB_RHOPB RecName: Full=N utilization substance protein B homolog; Short=Protein NusB gb|ABD88214.1| NusB antitermination factor [Rhodopseudomonas palustris BisB18] Length = 169 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 135/160 (84%), Positives = 149/160 (93%) Query: 4 NKKPAKAPDRKANRRGAARLAAVQALYQMDIGGAGINDIFAEFESHWLGNEVEGEKYLPA 63 + KPA ++KANRRGAARLAAVQALYQMD+GGAG+NDIFAEFESHWLGNEVEG++YLPA Sbjct: 9 DNKPAPKGEKKANRRGAARLAAVQALYQMDVGGAGLNDIFAEFESHWLGNEVEGDQYLPA 68 Query: 64 EAAFFRDVVSGVVRDQARLDPLIDEALSKGWPLKRIDAILRAVLRAGSYELEHRKDVPGR 123 E AFF+DVVSGVVRDQA+LDPLID AL+KGWPL RIDAILRAV+RAG+YELEHRKDVP R Sbjct: 69 EQAFFQDVVSGVVRDQAKLDPLIDVALAKGWPLARIDAILRAVMRAGAYELEHRKDVPAR 128 Query: 124 VVVSEYVDVAHAFVEKDETGMVNAVLDQIARQFRGDEFVR 163 VVVSEYVDVA+AFVE +ETGMVNAVLDQIARQFR DEF R Sbjct: 129 VVVSEYVDVANAFVEGEETGMVNAVLDQIARQFRADEFSR 168