BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0060.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771620.1| hypothetical protein bll4980 [Bradyrhizobium ja...   162   1e-38
ref|YP_001206212.1| hypothetical protein BRADO4236 [Bradyrhizobi...   154   5e-36
ref|YP_001240546.1| hypothetical protein BBta_4612 [Bradyrhizobi...   142   1e-32
ref|ZP_07028368.1| protein of unknown function DUF218 [Afipia sp...   120   5e-26
ref|YP_001992545.1| hypothetical protein Rpal_3570 [Rhodopseudom...   117   4e-25

>ref|NP_771620.1| hypothetical protein bll4980 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50245.1| bll4980 [Bradyrhizobium japonicum USDA 110]
          Length = 301

 Score =  162 bits (411), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 96/120 (80%)

Query: 1   VLSKTLGIMLLPINFLIGIGVIGTVLLLTRFARLGRGLMVAALLLLAICGFSPLGNVLIS 60
           VLSKTLG  LLPIN L+ +G++  VL+LTRFA LGR L V  L+LLA+  FSPLGN+L+ 
Sbjct: 38  VLSKTLGTALLPINLLVELGILSLVLMLTRFAALGRKLAVTTLVLLALAAFSPLGNLLLY 97

Query: 61  TLEQRFPPWDASRGAPDGIIVLGGSIDADLSVAHGTPVVRSAADRVIAAAALARRYPNAR 120
            LE RFP WD SRGAPDGIIVLGGS+D DLS AH TPVV SAADR++A A LARR+PNAR
Sbjct: 98  PLESRFPKWDPSRGAPDGIIVLGGSVDTDLSAAHRTPVVASAADRMLAPAELARRFPNAR 157


>ref|YP_001206212.1| hypothetical protein BRADO4236 [Bradyrhizobium sp. ORS 278]
 emb|CAL77987.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 262

 Score =  154 bits (389), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/122 (61%), Positives = 98/122 (80%)

Query: 1   VLSKTLGIMLLPINFLIGIGVIGTVLLLTRFARLGRGLMVAALLLLAICGFSPLGNVLIS 60
           VLSKTLG++ LP NF+I +G++G +L+LTRFA LGR L+ +A+LLLAI G +PLG++++ 
Sbjct: 4   VLSKTLGLLALPTNFMIALGLLGAILMLTRFAVLGRRLVASAMLLLAIVGLTPLGSLMLY 63

Query: 61  TLEQRFPPWDASRGAPDGIIVLGGSIDADLSVAHGTPVVRSAADRVIAAAALARRYPNAR 120
            LE RFP WD ++GAPDGIIVLGG +D+DLS  +G PV  + ADRVI AA LARRYPNAR
Sbjct: 64  PLESRFPKWDPAKGAPDGIIVLGGPVDSDLSAIYGMPVTVAGADRVIQAAVLARRYPNAR 123

Query: 121 XM 122
            +
Sbjct: 124 VL 125


>ref|YP_001240546.1| hypothetical protein BBta_4612 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36640.1| hypothetical protein BBta_4612 [Bradyrhizobium sp. BTAi1]
          Length = 262

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 99/120 (82%)

Query: 1   VLSKTLGIMLLPINFLIGIGVIGTVLLLTRFARLGRGLMVAALLLLAICGFSPLGNVLIS 60
           VLSKTLG++ LP NF+I +G++G VL+LTRFA  GR L+VAA+LLLA+ G +PLG++++S
Sbjct: 4   VLSKTLGLLALPTNFMIVLGLLGVVLMLTRFAVFGRRLVVAAMLLLAVLGLTPLGSLMLS 63

Query: 61  TLEQRFPPWDASRGAPDGIIVLGGSIDADLSVAHGTPVVRSAADRVIAAAALARRYPNAR 120
            LE RFP WD ++GAPDGIIVLGG +D DLS+ +G PV  + ADR+I AAALARRYPNAR
Sbjct: 64  PLESRFPKWDPAKGAPDGIIVLGGPVDPDLSIMYGMPVTVAGADRLIQAAALARRYPNAR 123


>ref|ZP_07028368.1| protein of unknown function DUF218 [Afipia sp. 1NLS2]
 gb|EFI50358.1| protein of unknown function DUF218 [Afipia sp. 1NLS2]
          Length = 264

 Score =  120 bits (302), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 83/118 (70%)

Query: 3   SKTLGIMLLPINFLIGIGVIGTVLLLTRFARLGRGLMVAALLLLAICGFSPLGNVLISTL 62
           SK  G ++ P N +  + +IG +L LTR+ + G  +  A +LLL +CG+SPLGNVL+ TL
Sbjct: 6   SKIFGFLITPSNLIATVCLIGVMLSLTRWRKAGVRIGAAGILLLLVCGYSPLGNVLLLTL 65

Query: 63  EQRFPPWDASRGAPDGIIVLGGSIDADLSVAHGTPVVRSAADRVIAAAALARRYPNAR 120
            +RFP W  S  APDGIIVLGG+I+ DL+   G P + S+A+R+ AAA LARR+PNA+
Sbjct: 66  SERFPAWQESGRAPDGIIVLGGAINPDLTAVRGAPEMNSSAERMTAAAVLARRFPNAK 123


>ref|YP_001992545.1| hypothetical protein Rpal_3570 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02070.1| protein of unknown function DUF218 [Rhodopseudomonas palustris
           TIE-1]
          Length = 264

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 88/120 (73%)

Query: 1   VLSKTLGIMLLPINFLIGIGVIGTVLLLTRFARLGRGLMVAALLLLAICGFSPLGNVLIS 60
           +LSK LG  + P N +  I V G VL+LTR+ R GR L++  ++LL I G+SPLGNVL+ 
Sbjct: 4   LLSKILGFFVHPSNTIAMICVAGLVLMLTRWWRAGRALLIGGVVLLLIAGYSPLGNVLLL 63

Query: 61  TLEQRFPPWDASRGAPDGIIVLGGSIDADLSVAHGTPVVRSAADRVIAAAALARRYPNAR 120
           +L +RFPPW  +  APDGIIVLGG+ID++LSVA  T  V ++A+RV+AA  LARRYP AR
Sbjct: 64  SLSERFPPWHEAGRAPDGIIVLGGAIDSELSVARNTLEVDASAERVLAALDLARRYPKAR 123