BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0045.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003897864.1| LysR family transcriptional regulator [Halom... 226 4e-57 ref|YP_573074.1| LysR family transcriptional regulator [Chromoha... 217 2e-54 ref|YP_002282409.1| LysR family transcriptional regulator [Rhizo... 208 1e-51 ref|YP_769199.1| LysR family transcriptional regulator [Rhizobiu... 206 4e-51 ref|YP_470659.1| LysR family transcriptional regulator [Rhizobiu... 205 6e-51 >ref|YP_003897864.1| LysR family transcriptional regulator [Halomonas elongata DSM 2581] emb|CBV42679.1| transcriptional regulator, LysR family [Halomonas elongata DSM 2581] Length = 323 Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 121/288 (42%), Positives = 173/288 (60%), Gaps = 1/288 (0%) Query: 5 LKLRQLRLLVALDNERKLQLAAERLNITQSAASKMLAEIEALARVPLFERTARGVEPTAY 64 LKLR L+L +ALD+ R L AA L+++Q AASK+L E+E V LFER +RGVEP Y Sbjct: 20 LKLRHLQLFLALDDHRNLHRAAASLSMSQPAASKLLGELEERLGVRLFERHSRGVEPNWY 79 Query: 65 GSILIRGGKSVLADLDQVTDEFAGYKSGELGTVSVGTVAKPSIDLVVDVIQYLGEKLNRV 124 G + +R +++L+ L Q DE +G G VSVGTV P++ L+ ++ + +L + Sbjct: 80 GEVAVRHARNILSSLQQTGDELNALNAGNAGAVSVGTVMAPAVTLLSRALERVHRQLPGL 139 Query: 125 NISLDVSTSPPLITRLLALEFDFVVARIPAGIDPRQFDYFEIGAEEAVLLVRAEHPLAGR 184 +++DV SP L+ RLL E D V++RIPAG DP F + EIG E ++ R EHPLA Sbjct: 140 KVNVDVDVSPALVPRLLEGELDMVISRIPAGFDPGHFVFEEIGEEAISVVCRREHPLADV 199 Query: 185 ETVELEDMADQQWICQPRESFMRQALERLFMSRGVTPPRRVINTESFFASVGIAAGIDAI 244 + L +M W QP + MRQ ++ L M ++PP R+INT S+ + A D + Sbjct: 200 ASPTLAEMTAYPWSLQPPGALMRQRVDHLLMYHDLSPPTRIINTSDVLVSLALVANSDTL 259 Query: 245 VPVPMLVFDLV-DPQRFKVLRLRDRLLLENYGLIKLRKRALSPAAALL 291 V +L+ DPQRF+VL + L ++ YGLI LR++ LSP AA L Sbjct: 260 TVTSREVAELLCDPQRFRVLPTEEALSVQPYGLITLRQKRLSPGAAAL 307 >ref|YP_573074.1| LysR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gb|ABE58375.1| transcriptional regulator, LysR family [Chromohalobacter salexigens DSM 3043] Length = 317 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 116/295 (39%), Positives = 174/295 (58%), Gaps = 1/295 (0%) Query: 5 LKLRQLRLLVALDNERKLQLAAERLNITQSAASKMLAEIEALARVPLFERTARGVEPTAY 64 LKLR L+L +ALD+ R L AAERL ++Q AASK+L E+E + LFER RG+ P Y Sbjct: 14 LKLRHLQLFIALDDLRNLHRAAERLGMSQPAASKLLGELEGQLGLALFERHPRGITPNWY 73 Query: 65 GSILIRGGKSVLADLDQVTDEFAGYKSGELGTVSVGTVAKPSIDLVVDVIQYLGEKLNRV 124 G +IR + +L+ L Q DE ++G G+VSVGTV P++ L+ ++ + + Sbjct: 74 GETVIRHARGILSSLHQAGDELNALQAGSAGSVSVGTVMAPAVTLLTSAVERVHRDRPNL 133 Query: 125 NISLDVSTSPPLITRLLALEFDFVVARIPAGIDPRQFDYFEIGAEEAVLLVRAEHPLAGR 184 +S+DV S LI RL+ EFDF +ARIP+ + F + EIG E + RA HPLA R Sbjct: 134 KVSIDVDVSHELIPRLVEGEFDFAIARIPSTLPAGDFVFEEIGEEALCFVCRAGHPLADR 193 Query: 185 ETVELEDMADQQWICQPRESFMRQALERLFMSRGVTPPRRVINTESFFASVGIAAGIDAI 244 ++ LE M + W+ QP + MRQ ++ LF+ GV PR++I+T ++ + D + Sbjct: 194 TSLNLEAMVEYPWVLQPPGALMRQRVDHLFLHHGVALPRQIIDTPDILVALAMVDKSDTV 253 Query: 245 VPVPMLVFDLV-DPQRFKVLRLRDRLLLENYGLIKLRKRALSPAAALLFDAMKRL 298 V +L+ D RF++L + L ++ YGL+ LR++ LSP AA L A++ L Sbjct: 254 TVTTRQVAELLCDQPRFRILPFPEALSVQPYGLVSLREQRLSPGAAALMSALRDL 308 >ref|YP_002282409.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI56183.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 335 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 114/295 (38%), Positives = 177/295 (60%), Gaps = 6/295 (2%) Query: 5 LKLRQLRLLVALDNERKLQLAAERLNITQSAASKMLAEIEALARVPLFERTARGVEPTAY 64 LKL LR++VA+++ ++ AAE LNI+Q AAS+ML+E+E++ + L+ER ARGV T + Sbjct: 30 LKLNHLRMIVAIEDSGQISAAAEVLNISQPAASRMLSEMESITKTQLYERVARGVVLTTF 89 Query: 65 GSILIRGGKSVLADLDQVTDEFAGYKSGELGTVSVGTVAKPSIDLVVDVIQYLGEKLNRV 124 G+ L R + +L +L + + E KSG+ G+V +G V P++ LVV I + + + Sbjct: 90 GAALARRARKILLELREASREIGELKSGKGGSVFIGAVTAPAMSLVVPAINRVRKAYPGI 149 Query: 125 NISLDVSTSPPLITRLLALEFDFVVARIPAGIDPRQFDYFEIGAEEAVLLVRAEHP-LAG 183 I++ V TS L LLA DF+++RIP ++PR F+ EIG E A L+VR+ HP L Sbjct: 150 EINIQVETSNVLARELLAARHDFIISRIPDDLNPRLFEVTEIGIERACLIVRSRHPLLKK 209 Query: 184 RETVELEDMADQQWICQPRESFMRQALERLFMSRGVTPPRRVINTESFFASVGIAAGIDA 243 ++T L D+ D W+ QP + +R+ +E +F+SRGV P ++NT S + I G DA Sbjct: 210 KKTSSLSDIRDYDWVFQPPGTLLRRTIEDIFLSRGVALPENIVNTSSLLLTCAIVCGTDA 269 Query: 244 IVPVPMLVFDLVDPQR-----FKVLRLRDRLLLENYGLIKLRKRALSPAAALLFD 293 I PV V + Q ++L + + ++ Y LI R+RAL P+A LL+D Sbjct: 270 IAPVATDVAQFLSSQSARASDVRMLPIDFDINVKPYSLITARERALPPSARLLYD 324 >ref|YP_769199.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK09107.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 325 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 112/294 (38%), Positives = 176/294 (59%), Gaps = 5/294 (1%) Query: 5 LKLRQLRLLVALDNERKLQLAAERLNITQSAASKMLAEIEALARVPLFERTARGVEPTAY 64 LKL LR++VA+++ ++ AAE LNI+Q AAS+ML+E+E++ + L+ER ARGV T + Sbjct: 21 LKLNHLRMIVAIEDSGQISAAAEVLNISQPAASRMLSEMESITKTSLYERVARGVVLTTF 80 Query: 65 GSILIRGGKSVLADLDQVTDEFAGYKSGELGTVSVGTVAKPSIDLVVDVIQYLGEKLNRV 124 G+ L R + +L +L + + E KSG+ G+V +G V P++ LVV I + + + Sbjct: 81 GAALARRARKILLELREASREIGELKSGKGGSVFIGAVTAPAMSLVVPAINKVRKAYPGI 140 Query: 125 NISLDVSTSPPLITRLLALEFDFVVARIPAGIDPRQFDYFEIGAEEAVLLVRAEHPLAGR 184 I++ V TS L LLA DF++ RIP ++PR F+ EIG E A L+VR+ HPL + Sbjct: 141 EINIQVETSNVLARELLAARHDFIIGRIPDDLNPRLFEVTEIGIERACLIVRSSHPLMKQ 200 Query: 185 ETVELEDMADQQWICQPRESFMRQALERLFMSRGVTPPRRVINTESFFASVGIAAGIDAI 244 +T L D+ D W+ QP + +R+ +E +F+SRGV P ++NT S + I DAI Sbjct: 201 KTSSLSDVRDYDWVFQPPGTLLRRTIEDVFLSRGVALPENIVNTSSLLLTCAIICETDAI 260 Query: 245 VPVPMLVFDLVDPQ-----RFKVLRLRDRLLLENYGLIKLRKRALSPAAALLFD 293 PV + V + Q ++L + + ++ Y +I R+RAL P+A LL+D Sbjct: 261 APVAVDVAQFLASQGSNASDVRMLPIDFDINVKPYSMITARERALPPSARLLYD 314 >ref|YP_470659.1| LysR family transcriptional regulator [Rhizobium etli CFN 42] gb|ABC91932.1| transcriptional regulator protein, LysR family (possibly activator of the expression of chvE protein) [Rhizobium etli CFN 42] Length = 335 Score = 205 bits (522), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 118/308 (38%), Positives = 178/308 (57%), Gaps = 6/308 (1%) Query: 3 NNLKLRQLRLLVALDNERKLQLAAERLNITQSAASKMLAEIEALARVPLFERTARGVEPT 62 + LKL LR++VA+++ ++ AAE LNI+Q AAS+ML+E+EA+ + L+ER ARGV T Sbjct: 28 SGLKLNHLRIIVAIEDSGQISAAAEVLNISQPAASRMLSEMEAITKTSLYERVARGVVLT 87 Query: 63 AYGSILIRGGKSVLADLDQVTDEFAGYKSGELGTVSVGTVAKPSIDLVVDVIQYLGEKLN 122 +G+ L R + +L +L + + E KSG+ G+V +G V P++ LVV I + + Sbjct: 88 TFGAALARRARKILLELREASREIGELKSGKGGSVFIGAVTAPAMSLVVPAINRVRKAYP 147 Query: 123 RVNISLDVSTSPPLITRLLALEFDFVVARIPAGIDPRQFDYFEIGAEEAVLLVRAEHPLA 182 + I++ V TS L LLA DF++ RIP ++PR F+ EIG E A L+VR HPL Sbjct: 148 GIEINIQVETSNVLARELLAARHDFIIGRIPDDLNPRLFEVKEIGIERACLIVRNRHPLL 207 Query: 183 GR-ETVELEDMADQQWICQPRESFMRQALERLFMSRGVTPPRRVINTESFFASVGIAAGI 241 R +T L D+ D W+ QP + +R+ +E +F+SRGV P ++NT S + I Sbjct: 208 KRKKTSSLSDVRDYDWVFQPPGTLLRRTIEDIFLSRGVALPENIVNTSSLLLTCAIVCET 267 Query: 242 DAIVPVPMLVFDLVDPQRFKVLRLRD-----RLLLENYGLIKLRKRALSPAAALLFDAMK 296 DAI PV + V + Q K +R + ++ Y LI R+RAL P+A LL+D + Sbjct: 268 DAIAPVAVDVAHFLASQGAKASDVRMLPIDFDINVKPYSLITARERALPPSAKLLYDIIL 327 Query: 297 RLGVPNGG 304 GG Sbjct: 328 EESRTQGG 335