BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0044.p (397 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771611.1| hypothetical protein blr4971 [Bradyrhizobium ja... 483 e-134 ref|YP_781763.1| hypothetical protein RPE_2846 [Rhodopseudomonas... 482 e-134 ref|YP_569828.1| hypothetical protein RPD_2698 [Rhodopseudomonas... 467 e-129 ref|YP_001240538.1| hypothetical protein BBta_4604 [Bradyrhizobi... 466 e-129 ref|YP_577712.1| hypothetical protein Nham_2462 [Nitrobacter ham... 462 e-128 >ref|NP_771611.1| hypothetical protein blr4971 [Bradyrhizobium japonicum USDA 110] dbj|BAC50236.1| blr4971 [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 253/396 (63%), Positives = 298/396 (75%), Gaps = 4/396 (1%) Query: 1 MTMAAAIEGQTAETRAWPNAIRVAGVDIFHDLTAAEATWRGFETPQHSYTPYQRFDFLAA 60 MTMAAA++ +TAE A A R+A VDI DL AE WR E H +TPYQRFD L+ Sbjct: 76 MTMAAAMQSRTAEAPARSKASRIAQVDIVTDLNQAEPVWRALEESGHLFTPYQRFDLLSP 135 Query: 61 WQRQVGEREGLRPFIVVAHDSERRPLLLLPLAIEARLGANCASFMGGKHATFNMALCAKD 120 WQR VG EG RPFIV+A D+E PLLLLPL++ G A FMGGKH TFNM L + Sbjct: 136 WQRLVGGCEGARPFIVIARDAEHAPLLLLPLSLRQGHGVRTACFMGGKHTTFNMGLWNAE 195 Query: 121 FAANATEADIAALIGSIAERSRADALVLCQQPLRWQDLPNPLALLAHQPSVNDCPVLAIE 180 FAA A AD+ AL+ + R D L L QQPLRW D NP A L Q ++N CP+L +E Sbjct: 196 FAAQAVAADLDALLAPL--REHVDVLSLTQQPLRWNDQQNPFAALPRQSAINGCPLLVME 253 Query: 181 PGAAPATLVSNSFRRRLKGKERKLQALPGYRYYVASESADVCRLLDWFFRVKPQRMAEQK 240 PG PA+ +SNSFRRRLK KE+KLQAL GYRY++A+ ADV RLLDWFFRVKP RMAEQK Sbjct: 254 PGGPPASRISNSFRRRLKSKEKKLQALAGYRYHLATNDADVTRLLDWFFRVKPVRMAEQK 313 Query: 241 LPNVFAEPGIEQFVRAACLAPRADGEGYAIDIHALECDEEVIAIFAGVSDGHRFSMMFNT 300 LPNVFAEPG+EQFVR+ACLAPR G+G IDIHALECD+EVIAIFAGV+DG RFSMMFNT Sbjct: 314 LPNVFAEPGVEQFVRSACLAPR--GDGRVIDIHALECDDEVIAIFAGVADGQRFSMMFNT 371 Query: 301 YTMSANSKFSPGLILMRDIIDRHAGLNYRALDLGIGSDEYKRLFCKDDEAVVDSFVPLSL 360 YTMS ++++SPGLILMR IIDR+A YR+LDLGIGSD+YKR+FCKDDE + DSFVPL+ Sbjct: 372 YTMSEHARYSPGLILMRYIIDRYAERGYRSLDLGIGSDDYKRMFCKDDEDIFDSFVPLTS 431 Query: 361 RGKPAASALSAINRAKRAVKQNPALFEIAQNLRSMF 396 RGK AA A+S+++ KR VKQN LF++AQ LR F Sbjct: 432 RGKLAAMAMSSLSHGKRLVKQNQMLFDLAQRLRRAF 467 >ref|YP_781763.1| hypothetical protein RPE_2846 [Rhodopseudomonas palustris BisA53] gb|ABJ06783.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 399 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 246/394 (62%), Positives = 298/394 (75%), Gaps = 2/394 (0%) Query: 2 TMAAAIEGQTAETRAWPNAIRVAGVDIFHDLTAAEATWRGFETPQHSYTPYQRFDFLAAW 61 TM A ++ AE+ A A R+A V++ ++ AAEA WR E P+H TP+QRFD LAAW Sbjct: 3 TMTAIVQNVDAESSASSGASRIARVEVLREIAAAEAIWRALERPEHLSTPFQRFDLLAAW 62 Query: 62 QRQVGEREGLRPFIVVAHDSERRPLLLLPLAIEARLGANCASFMGGKHATFNMALCAKDF 121 QR VG +GL PFIVV D+E PL LLPLA+E R G A F+GGKH TFNM L +DF Sbjct: 63 QRHVGSHKGLAPFIVVVRDAEANPLALLPLAVERRHGVRVARFLGGKHTTFNMPLWRRDF 122 Query: 122 AANATEADIAALIGSIAERSRA-DALVLCQQPLRWQDLPNPLALLAHQPSVNDCPVLAIE 180 A A +AD+AAL+ + + D L L QQP RW+D+ NP+ALL HQPSVN CP+LA+ Sbjct: 123 APCAGQADLAALLAGLRGQPEPIDVLALTQQPARWRDIANPMALLPHQPSVNGCPLLALT 182 Query: 181 PGAAPATLVSNSFRRRLKGKERKLQALPGYRYYVASESADVCRLLDWFFRVKPQRMAEQK 240 PGA P +SNSFRRRL+GKE+KLQALPG+ +A+ A++ RLLDWFF VKPQRMA Q Sbjct: 183 PGAPPTDRISNSFRRRLRGKEKKLQALPGFGSRIAASEAEIVRLLDWFFVVKPQRMAAQN 242 Query: 241 LPNVFAEPGIEQFVRAACLAPRADGEGYAIDIHALECDEEVIAIFAGVSDGHRFSMMFNT 300 LPNVFA+PG+E F+R ACLAP DG G+AIDIHAL CDEE IA+FAGV+DG RFSMMFNT Sbjct: 243 LPNVFADPGVESFIRDACLAPGPDG-GHAIDIHALSCDEEPIALFAGVADGRRFSMMFNT 301 Query: 301 YTMSANSKFSPGLILMRDIIDRHAGLNYRALDLGIGSDEYKRLFCKDDEAVVDSFVPLSL 360 YT+S N++ SPGLILMRDIID +A Y ALDLGIG+DEYKR+FCKDDE +VDSFVPLS Sbjct: 302 YTLSENARHSPGLILMRDIIDHYAEKGYSALDLGIGTDEYKRIFCKDDEPIVDSFVPLSA 361 Query: 361 RGKPAASALSAINRAKRAVKQNPALFEIAQNLRS 394 RG+ AA A++++ RAKRAVKQNPAL +AQ RS Sbjct: 362 RGRIAAPAMASLARAKRAVKQNPALMNLAQQARS 395 >ref|YP_569828.1| hypothetical protein RPD_2698 [Rhodopseudomonas palustris BisB5] gb|ABE39927.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 400 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 237/396 (59%), Positives = 293/396 (73%), Gaps = 4/396 (1%) Query: 1 MTMAAAI-EGQTA-ETRAWPNAIRVAGVDIFHDLTAAEATWRGFETPQHSYTPYQRFDFL 58 MTM A + EG++A A R+A V+I ++ AAEA WR E P+ +TPYQRFDFL Sbjct: 1 MTMMAVLSEGRSAGHAAASAQPGRIARVEIVREMAAAEAIWRSLEQPEQFFTPYQRFDFL 60 Query: 59 AAWQRQVGEREGLRPFIVVAHDSERRPLLLLPLAIEARLGANCASFMGGKHATFNMALCA 118 AWQR VG E L PFIVVA D+E RPL+LLPL +E R G A F+GGKHATFNM L Sbjct: 61 DAWQRHVGVAEQLEPFIVVARDAELRPLMLLPLGLERRFGLRIARFLGGKHATFNMPLWR 120 Query: 119 KDFAANATEADIAALIGSI-AERSRADALVLCQQPLRWQDLPNPLALLAHQPSVNDCPVL 177 +D A A ++ ALI + A+ AD L L QQPLRW+DL NPLA L HQ SVN+CPVL Sbjct: 121 RDAAQTADARELDALIAGLRAQPDGADVLALRQQPLRWRDLANPLAQLPHQASVNECPVL 180 Query: 178 AIEPGAAPATLVSNSFRRRLKGKERKLQALPGYRYYVASESADVCRLLDWFFRVKPQRMA 237 ++P A+P+ +SN+ RRRLK KE+KLQALPGYRY A+ DV R+LD FFR+KP RMA Sbjct: 181 LLDPAASPSDRISNASRRRLKTKEKKLQALPGYRYSQATSDDDVRRVLDAFFRIKPVRMA 240 Query: 238 EQKLPNVFAEPGIEQFVRAACLAPRADGEGYAIDIHALECDEEVIAIFAGVSDGHRFSMM 297 QKLPNVFA+PG+E F+R AC A G G AI+IHALE D+++IA+FAGV+DGHR+SMM Sbjct: 241 AQKLPNVFADPGVEDFIRRACQTELAGG-GRAIEIHALESDDDMIAMFAGVADGHRYSMM 299 Query: 298 FNTYTMSANSKFSPGLILMRDIIDRHAGLNYRALDLGIGSDEYKRLFCKDDEAVVDSFVP 357 FNTYT+S +++SPGLILMR IID +A L Y LDLGIGSD+YK+ FCKDDE + DSFV Sbjct: 300 FNTYTLSEAARYSPGLILMRSIIDHYAELGYSRLDLGIGSDDYKKQFCKDDEPIFDSFVA 359 Query: 358 LSLRGKPAASALSAINRAKRAVKQNPALFEIAQNLR 393 L+ RG+ AASA+++I+RAKR VKQ PAL ++AQ LR Sbjct: 360 LTPRGRIAASAMASIDRAKRTVKQTPALMQMAQALR 395 >ref|YP_001240538.1| hypothetical protein BBta_4604 [Bradyrhizobium sp. BTAi1] gb|ABQ36632.1| hypothetical protein BBta_4604 [Bradyrhizobium sp. BTAi1] Length = 406 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 241/393 (61%), Positives = 293/393 (74%), Gaps = 5/393 (1%) Query: 1 MTMAAAIEGQTAETRAWPNAIRVAGVDIFHDLTAAEATWRGFETPQHSYTPYQRFDFLAA 60 MTMAA IE +TA++ P + +A V+I DL AAE WR E P H TPYQRFD LAA Sbjct: 1 MTMAAVIENRTAQS---PLS-GLAQVEIVSDLAAAEPAWRILEAPDHISTPYQRFDLLAA 56 Query: 61 WQRQVGEREGLRPFIVVAHDSERRPLLLLPLAIEARLGANCASFMGGKHATFNMALCAKD 120 WQ +VG RE PFIV+A D++++PLLLLPLA+ GA ASFMGGKH TFNM L + Sbjct: 57 WQHEVGAREQATPFIVIARDAKQQPLLLLPLALTHAFGARVASFMGGKHTTFNMPLMHRA 116 Query: 121 FAANATEADIAALIGSIAERSRADALVLCQQPLRWQDLPNPLALLAHQPSVNDCPVLAIE 180 FAA A+ D+ L+ + + D L L QQPLRW + NPLA QPSVNDCPVL + Sbjct: 117 FAARASVGDLEFLLAGLRDHGGVDVLALTQQPLRWSTIANPLAQWPRQPSVNDCPVLLMP 176 Query: 181 PGAAPATLVSNSFRRRLKGKERKLQALPGYRYYVASESADVCRLLDWFFRVKPQRMAEQK 240 PGAA L+SNSFR+RLK KE+KLQALPGYRY +AS A++ LLDWFFR+KP RMAEQK Sbjct: 177 PGAASTALLSNSFRKRLKSKEKKLQALPGYRYMIASSDAEIAELLDWFFRIKPIRMAEQK 236 Query: 241 LPNVFAEPGIEQFVRAACLAPRADGEGYAIDIHALECDEEVIAIFAGVSDGHRFSMMFNT 300 LPNVFAEPGIE FVRAACLA + G AI+IHAL CD+E+IA+FAGV+DG RFSMMFNT Sbjct: 237 LPNVFAEPGIEAFVRAACLAKLSCGH-RAIEIHALRCDDEIIALFAGVADGERFSMMFNT 295 Query: 301 YTMSANSKFSPGLILMRDIIDRHAGLNYRALDLGIGSDEYKRLFCKDDEAVVDSFVPLSL 360 YT+S N+++SPGLILMR IID +A +RALDLGIGSD+YKR+FCKDDE + DS++ L+ Sbjct: 296 YTLSENARWSPGLILMRSIIDHYAQSGFRALDLGIGSDDYKRMFCKDDEPIFDSYLSLTA 355 Query: 361 RGKPAASALSAINRAKRAVKQNPALFEIAQNLR 393 RG AA ++A+ RAK AVK +PALF +AQ +R Sbjct: 356 RGLVAARTMAALGRAKHAVKHSPALFRLAQRVR 388 >ref|YP_577712.1| hypothetical protein Nham_2462 [Nitrobacter hamburgensis X14] gb|ABE63252.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 397 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 242/395 (61%), Positives = 290/395 (73%), Gaps = 3/395 (0%) Query: 1 MTMAAAIEGQTAETRAWPNAIRVAGVDIFHDLTAAEATWRGFETPQHSYTPYQRFDFLAA 60 MTMAA IE QTA TR R+ +DI HDL AE WR E H TPYQRFDFL+A Sbjct: 1 MTMAAVIESQTARTRPRSGERRIVHLDILHDLGEAEPVWRSLEA-SHFSTPYQRFDFLSA 59 Query: 61 WQRQVGEREGLRPFIVVAHDSERRPLLLLPLAIEARLGANCASFMGGKHATFNMALCAKD 120 WQR VG + L+P I+VA D+ERRPLLLLPL A G A FMGGKHATFNM L +D Sbjct: 60 WQRHVGTKSDLQPCIIVACDAERRPLLLLPLTAGAENGVRVARFMGGKHATFNMPLWQRD 119 Query: 121 FAANATEADIAALIGSIAER-SRADALVLCQQPLRWQDLPNPLALLAHQPSVNDCPVLAI 179 FAA+AT A++ L+ I E ++ D L +QP RW+DL NP+ALL Q S N CP++ I Sbjct: 120 FAASATLAELDTLVRGIRELPAKIDVLAFTRQPRRWRDLQNPMALLPGQTSANGCPLMTI 179 Query: 180 EPGAAPATLVSNSFRRRLKGKERKLQALPGYRYYVASESADVCRLLDWFFRVKPQRMAEQ 239 PGA P+ +S SFRRRLK KERKLQALPG+RY VA+ ++ R+LD FF +KP RMA Q Sbjct: 180 VPGAPPSEHISRSFRRRLKDKERKLQALPGFRYRVATTETEIKRMLDAFFTIKPLRMAAQ 239 Query: 240 KLPNVFAEPGIEQFVRAACLAPRADGEGYAIDIHALECDEEVIAIFAGVSDGHRFSMMFN 299 KLPNVFA PG+E F+RAACL P DG G+AI+IHALECD EVIAIFAGV+D HRFSMMFN Sbjct: 240 KLPNVFASPGVEDFLRAACLTPLPDG-GHAIEIHALECDTEVIAIFAGVADDHRFSMMFN 298 Query: 300 TYTMSANSKFSPGLILMRDIIDRHAGLNYRALDLGIGSDEYKRLFCKDDEAVVDSFVPLS 359 TYT+S N+++SPGLILMRDI D +A Y +LDLGIGSD+YKRLFCK DE + DS++PL+ Sbjct: 299 TYTLSENARYSPGLILMRDIADHYAERGYTSLDLGIGSDDYKRLFCKGDEPIFDSYLPLT 358 Query: 360 LRGKPAASALSAINRAKRAVKQNPALFEIAQNLRS 394 RG+ AA +S++ RAKR VKQ PAL +AQ LRS Sbjct: 359 ARGRMAAIGMSSMARAKRLVKQTPALKRMAQALRS 393