BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0033.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207979.1| putative methyl-accepting chemotaxis protein... 384 e-105 ref|NP_774170.1| hypothetical protein blr7530 [Bradyrhizobium ja... 364 7e-99 ref|YP_534564.1| hypothetical protein RPC_4723 [Rhodopseudomonas... 363 1e-98 ref|YP_578388.1| hypothetical protein Nham_3193 [Nitrobacter ham... 360 2e-97 ref|YP_779801.1| hypothetical protein RPE_0865 [Rhodopseudomonas... 358 3e-97 >ref|YP_001207979.1| putative methyl-accepting chemotaxis protein [Bradyrhizobium sp. ORS 278] emb|CAL79764.1| conserved hypothetical protein; putative Methyl-accepting chemotaxis protein [Bradyrhizobium sp. ORS 278] Length = 259 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 201/261 (77%), Positives = 218/261 (83%), Gaps = 12/261 (4%) Query: 3 RKRFRVEQAM-GEVVMPEPEVSGGADLNPMHREIMAELRSIRAQMAAAPAQRSGDSVDAA 61 RKRFR+E+A+ G MPEP+ GG ++ P H+EIM ELR+IRAQMA A RSG AA Sbjct: 4 RKRFRIEEAIVGH--MPEPDFVGG-EIGPNHKEIMDELRAIRAQMANAI--RSGGHSTAA 58 Query: 62 VA------REVAETHALLETYRAQVEQCEKLKVELDLIHDAISRTKREIAVLHGKSFNGE 115 A REVAE ALLETYRAQ+EQCEKLKVELDLIHDAI+RTK EIA LH KSFNGE Sbjct: 59 AAIEESAQREVAEARALLETYRAQIEQCEKLKVELDLIHDAINRTKGEIATLHAKSFNGE 118 Query: 116 EMAKVNGELGAVVGGTEQATQQILEAVEAIDQAATALANNVTPDQQKRLSEDIQERVVSI 175 EMAKVNGELGAVVGGTEQATQQILEA EAIDQAA+AL + DQQK LSEDIQERVVSI Sbjct: 119 EMAKVNGELGAVVGGTEQATQQILEAAEAIDQAASALGKVDSADQQKILSEDIQERVVSI 178 Query: 176 FEACNFQDLTGQRISKVMQTMKFIEQHINEMMNIWGGVDAIKSHVPAIVDTREGDARLLN 235 FEACNFQDLTGQRI+KVM TMKFIE HI MM+IWGGVDAIK+HVP IVDTREGDA+LLN Sbjct: 179 FEACNFQDLTGQRINKVMTTMKFIEHHIVVMMDIWGGVDAIKAHVPPIVDTREGDAKLLN 238 Query: 236 GPKLDGDAGHASQDDIDAMFN 256 GPK+DGD GHASQDDIDAMFN Sbjct: 239 GPKMDGDIGHASQDDIDAMFN 259 >ref|NP_774170.1| hypothetical protein blr7530 [Bradyrhizobium japonicum USDA 110] dbj|BAC52795.1| blr7530 [Bradyrhizobium japonicum USDA 110] Length = 267 Score = 364 bits (934), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 190/262 (72%), Positives = 212/262 (80%), Gaps = 10/262 (3%) Query: 1 VKRKRFRVEQAM-GEVVMPEPEVSGGADLNPMHREIMAELRSIRAQMAAAPAQRSGDSVD 59 + RKRFRVE+A+ GE MP PE+ A PMH EIMAELR+IRAQMA A S Sbjct: 10 IHRKRFRVEEAIVGE--MPSPEMIEEA--APMHSEIMAELRAIRAQMAKGTAAPLSASAA 65 Query: 60 AA-----VAREVAETHALLETYRAQVEQCEKLKVELDLIHDAISRTKREIAVLHGKSFNG 114 A A E+AET +L+TYRAQ+EQCEKLKVELDLIHDAI RTKREIA LHGKSF+G Sbjct: 66 MAAIDASTAHELAETRTMLDTYRAQIEQCEKLKVELDLIHDAIDRTKREIATLHGKSFDG 125 Query: 115 EEMAKVNGELGAVVGGTEQATQQILEAVEAIDQAATALANNVTPDQQKRLSEDIQERVVS 174 EMAKVNGELGAVVGGTEQATQQILEA E+IDQAA+A++ + DQQKRL++DIQERV+S Sbjct: 126 GEMAKVNGELGAVVGGTEQATQQILEAAESIDQAASAMSKVQSADQQKRLADDIQERVIS 185 Query: 175 IFEACNFQDLTGQRISKVMQTMKFIEQHINEMMNIWGGVDAIKSHVPAIVDTREGDARLL 234 IFEACNFQDLTGQRISKVM TMKFIEQHIN MM IWGGVDAIK+HVPA DTR D +LL Sbjct: 186 IFEACNFQDLTGQRISKVMTTMKFIEQHINAMMEIWGGVDAIKAHVPAPADTRSEDEKLL 245 Query: 235 NGPKLDGDAGHASQDDIDAMFN 256 NGPKL GD GHASQDDIDA+F+ Sbjct: 246 NGPKLAGDVGHASQDDIDALFD 267 >ref|YP_534564.1| hypothetical protein RPC_4723 [Rhodopseudomonas palustris BisB18] gb|ABD90245.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 259 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 185/261 (70%), Positives = 218/261 (83%), Gaps = 9/261 (3%) Query: 1 VKRKRFRVEQ-AMGEVVMPEPEVSGGADLNPMHREIMAELRSIRAQMAAAPAQRSGDSVD 59 V+RKRFR+E+ ++G V P+ S ++ P H EIM+ELR+IR QMA AQ + + V Sbjct: 3 VQRKRFRIEETSLG--VSPDS-FSVESEQAPKHSEIMSELRAIREQMAKPIAQGASNVVT 59 Query: 60 AAVA----REVAETHALLETYRAQVEQCEKLKVELDLIHDAISRTKREIAVLHGKSFNGE 115 + ++ R++AE +ALL++YRAQ+EQCEKLK+ELDLIHDAISRTKREIAVLHGKSF+GE Sbjct: 60 SELSASNERQIAEANALLQSYRAQIEQCEKLKIELDLIHDAISRTKREIAVLHGKSFDGE 119 Query: 116 EMAKVNGELGAVVGGTEQATQQILEAVEAIDQAATALANNVTPDQQKRLSEDIQERVVSI 175 EMAKVNGELGAVVGGTE+ATQ ILEA EAIDQAA+AL +PDQQK +SE+IQERV+SI Sbjct: 120 EMAKVNGELGAVVGGTEEATQLILEAAEAIDQAASALTKVNSPDQQKLISEEIQERVISI 179 Query: 176 FEACNFQDLTGQRISKVMQTMKFIEQHINEMMNIWGGVDAIKSHVPAIVDTREGDARLLN 235 FEACNFQDLTGQRISKVM TMKFIE HI MM+IWGGVDAIK+H P IVDTREGD +LLN Sbjct: 180 FEACNFQDLTGQRISKVMTTMKFIENHIMAMMDIWGGVDAIKAHAPPIVDTREGDDKLLN 239 Query: 236 GPKLDGDAGHASQDDIDAMFN 256 GPKLD D GHASQDDIDA+FN Sbjct: 240 GPKLD-DEGHASQDDIDALFN 259 >ref|YP_578388.1| hypothetical protein Nham_3193 [Nitrobacter hamburgensis X14] gb|ABE63928.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 260 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 183/261 (70%), Positives = 211/261 (80%), Gaps = 8/261 (3%) Query: 1 VKRKRFRVEQAMGEVVMPEPEVSGGADLNPM--HREIMAELRSIRAQMAAAPAQRSGDSV 58 V+RKRFRVE+ +G P+++ D PM HREIMAELR+IR QM A + +SV Sbjct: 3 VQRKRFRVEEILGGGT---PDIAIAVDDAPMPVHREIMAELRAIRQQMGAPHRNGAAESV 59 Query: 59 DA---AVAREVAETHALLETYRAQVEQCEKLKVELDLIHDAISRTKREIAVLHGKSFNGE 115 A +REVAE ALL+TYRAQ+EQCEKLK ELDLIHDAI+RTK+EIAVLHGKSF+G+ Sbjct: 60 AADGGTASREVAEAQALLQTYRAQIEQCEKLKTELDLIHDAINRTKQEIAVLHGKSFSGD 119 Query: 116 EMAKVNGELGAVVGGTEQATQQILEAVEAIDQAATALANNVTPDQQKRLSEDIQERVVSI 175 EMAKV ELGAVVGGTEQATQQIL A EAIDQ+A AL+ +P+Q + LSE+IQERV+SI Sbjct: 120 EMAKVTDELGAVVGGTEQATQQILAATEAIDQSAGALSKAASPEQTRLLSEEIQERVISI 179 Query: 176 FEACNFQDLTGQRISKVMQTMKFIEQHINEMMNIWGGVDAIKSHVPAIVDTREGDARLLN 235 FEACNFQDLTGQRI+KVM TMKFIE HIN MM+IWGGVDAI++H P IVD R GDARLLN Sbjct: 180 FEACNFQDLTGQRIAKVMSTMKFIEHHINVMMDIWGGVDAIRAHAPPIVDDRVGDARLLN 239 Query: 236 GPKLDGDAGHASQDDIDAMFN 256 GPKLDGD GHASQDDIDA+F Sbjct: 240 GPKLDGDEGHASQDDIDALFG 260 >ref|YP_779801.1| hypothetical protein RPE_0865 [Rhodopseudomonas palustris BisA53] gb|ABJ04821.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53] Length = 262 Score = 358 bits (920), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 184/264 (69%), Positives = 212/264 (80%), Gaps = 12/264 (4%) Query: 1 VKRKRFRVEQAMGEVVMPEPEVSGGADLNPM--HREIMAELRSIRAQMAA-APAQRSGDS 57 V+RKRFR+E E+ + +S D P HREIM ELR+IR QMA A +SGD Sbjct: 3 VQRKRFRIE----ELNLGSAAMSLSVDEAPTEGHREIMTELRAIRDQMAHHAVTPKSGDD 58 Query: 58 VDAAVAR-----EVAETHALLETYRAQVEQCEKLKVELDLIHDAISRTKREIAVLHGKSF 112 V A + ++A HALL++YRAQ+EQ EKLKVELDLIHDAISRTKREIA+LHGKSF Sbjct: 59 VTTAAIKASSDEQIAAAHALLQSYRAQIEQAEKLKVELDLIHDAISRTKREIAMLHGKSF 118 Query: 113 NGEEMAKVNGELGAVVGGTEQATQQILEAVEAIDQAATALANNVTPDQQKRLSEDIQERV 172 +GEEMAKVNGELGAVVGGTE+ATQQILEA EAIDQAA+AL +P+QQ L+E+IQERV Sbjct: 119 SGEEMAKVNGELGAVVGGTEEATQQILEAAEAIDQAASALIKVNSPEQQTMLTEEIQERV 178 Query: 173 VSIFEACNFQDLTGQRISKVMQTMKFIEQHINEMMNIWGGVDAIKSHVPAIVDTREGDAR 232 +SIFEACNFQDLTGQRI+KVM TMKFIE HIN MM+IWGGVDAIK+H P IVDTREGD + Sbjct: 179 ISIFEACNFQDLTGQRINKVMNTMKFIEHHINTMMDIWGGVDAIKAHAPPIVDTREGDDK 238 Query: 233 LLNGPKLDGDAGHASQDDIDAMFN 256 LLNGPKLD D GHASQDDIDA+F+ Sbjct: 239 LLNGPKLDDDPGHASQDDIDALFD 262