BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0020.p         (225 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_531217.1| hypothetical protein RPC_1336 [Rhodopseudomonas...    65   6e-09
ref|YP_783223.1| hypothetical protein RPE_4319 [Rhodopseudomonas...    63   4e-08
ref|YP_004110235.1| hypothetical protein Rpdx1_3945 [Rhodopseudo...    63   4e-08
ref|YP_002288057.1| hypothetical protein OCAR_5058 [Oligotropha ...    62   7e-08
ref|ZP_06889375.1| conserved hypothetical protein [Methylosinus ...    62   8e-08

>ref|YP_531217.1| hypothetical protein RPC_1336 [Rhodopseudomonas palustris BisB18]
 gb|ABD86898.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 362

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 4/81 (4%)

Query: 142 TLNAQAAALGPKQPQAAAQETRPSTIPGWSVVEVRDGTAVLEGPEGVKMAARGDVVPGLG 201
           +L A +A L   +P+ A    R  T+PGW + +V +G AV+EG +G+     GD +PGLG
Sbjct: 283 SLGAASANLTAPKPEVA----RLPTVPGWVLHDVANGAAVIEGRQGMFEVYAGDPIPGLG 338

Query: 202 RVDSIVRWGNRWIVATASGLI 222
           RVD+I R   RW+V T+ GLI
Sbjct: 339 RVDAIRRQDGRWVVVTSRGLI 359


>ref|YP_783223.1| hypothetical protein RPE_4319 [Rhodopseudomonas palustris BisA53]
 gb|ABJ08243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 302

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 166 TIPGWSVVEVRDGTAVLEGPEGVKMAARGDVVPGLGRVDSIVRWGNRWIVATASGLIAT 224
           T+ GW + EV DG A++EG +G      GD +PGLGRVD+I R   RW+V T+ GLI +
Sbjct: 243 TVEGWVLREVADGGAIIEGRQGAFEVFAGDPIPGLGRVDAIRRQDGRWVVVTSRGLIVS 301


>ref|YP_004110235.1| hypothetical protein Rpdx1_3945 [Rhodopseudomonas palustris DX-1]
 gb|ADU45502.1| hypothetical protein Rpdx1_3945 [Rhodopseudomonas palustris DX-1]
          Length = 322

 Score = 62.8 bits (151), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 43/71 (60%)

Query: 152 PKQPQAAAQETRPSTIPGWSVVEVRDGTAVLEGPEGVKMAARGDVVPGLGRVDSIVRWGN 211
           PK   A +Q  R  TI GW + +V DG AV+EG  G      GD +PG+GRVD+I R   
Sbjct: 249 PKPEPAKSQPGRLPTIEGWVLRDVYDGGAVVEGRSGTYEVYAGDPLPGVGRVDAIRRQDG 308

Query: 212 RWIVATASGLI 222
           RW+V T+ GLI
Sbjct: 309 RWVVVTSRGLI 319


>ref|YP_002288057.1| hypothetical protein OCAR_5058 [Oligotropha carboxidovorans OM5]
 ref|YP_004633835.1| hypothetical protein OCA5_c29030 [Oligotropha carboxidovorans OM5]
 gb|ACI92193.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gb|AEI04016.1| hypothetical protein OCA4_c29050 [Oligotropha carboxidovorans OM4]
 gb|AEI07594.1| hypothetical protein OCA5_c29030 [Oligotropha carboxidovorans OM5]
          Length = 255

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%)

Query: 160 QETRPSTIPGWSVVEVRDGTAVLEGPEGVKMAARGDVVPGLGRVDSIVRWGNRWIVATAS 219
           Q  R  TI GW V +VR+G A++EG +G+     GD +PG+GRVD+I R   RW+V T+ 
Sbjct: 190 QIGRLPTIDGWVVRDVRNGGALIEGRQGLFEVYAGDPLPGVGRVDAIRRQDGRWVVVTSR 249

Query: 220 GLI 222
           GLI
Sbjct: 250 GLI 252


>ref|ZP_06889375.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gb|EFH02172.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 191

 Score = 61.6 bits (148), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 23/113 (20%)

Query: 134 LALGAAPTTLNAQAAALGPKQPQAAAQ-ETRPS----------------------TIPGW 170
           L++ + P TL AQ A +   Q Q   Q E+RP                       TI G+
Sbjct: 77  LSIYSRPATLAAQRAQMQIAQTQPQTQSESRPQLQAQAKVDYAPVGSIGESPQTPTITGF 136

Query: 171 SVVEVRDGTAVLEGPEGVKMAARGDVVPGLGRVDSIVRWGNRWIVATASGLIA 223
            ++EVR G A+LE P  +   + GDVV GLGR+ +  R G++W++ T SG++A
Sbjct: 137 HLLEVRGGAALLETPNAIVRVSPGDVVAGLGRITAFERRGDKWVLVTPSGIVA 189