BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0195.0015.p         (335 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001220481.1| hypothetical protein BBta_p0140 [Bradyrhizob...   550   e-154
ref|YP_001237782.1| hypothetical protein BBta_1666 [Bradyrhizobi...   523   e-146
ref|YP_001207987.1| hypothetical protein BRADO6120 [Bradyrhizobi...   511   e-143
ref|YP_578394.1| hypothetical protein Nham_3199 [Nitrobacter ham...   507   e-141
ref|NP_774178.1| hypothetical protein bll7538 [Bradyrhizobium ja...   507   e-141

>ref|YP_001220481.1| hypothetical protein BBta_p0140 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39809.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 329

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 265/331 (80%), Positives = 289/331 (87%), Gaps = 2/331 (0%)

Query: 5   MKKLALLATALAMISSSAMAADMAVKAVKAPPPAPFDPWDIAFGAGIMSDYIFRGVTQSN 64
           MK+L L+A  LAM +SS  AADMAVKAVKAPPPAPFDPWD AFG+ IM+DYIFRGVTQSN
Sbjct: 1   MKRLVLVAAVLAMTASSTFAADMAVKAVKAPPPAPFDPWDFAFGSAIMNDYIFRGVTQSN 60

Query: 65  HNPSVTAYFEPRYNVSKDLQLYVGTSTESISFANRAAAEVDVYGGIRPTFGAFAFDIGVW 124
           H PSV AYFEPRYNV+KDLQLYVG + ESISF NR AAE+D+YGGIRPTFGAFAFDIGVW
Sbjct: 61  HKPSVAAYFEPRYNVTKDLQLYVGLAGESISFTNRPAAEIDIYGGIRPTFGAFAFDIGVW 120

Query: 125 GYLYPGGTCYYGGGAVADFAGNPLSAECQANTLTNFNVMKKDVSFFEVYGKATWTINDNW 184
           GYLYPGGTC++G  A  D AG  +SAEC AN L N N MKKDVSFFE YGK ++TIN+NW
Sbjct: 121 GYLYPGGTCFFG--APFDAAGKAVSAECAANALPNGNTMKKDVSFFEAYGKVSYTINENW 178

Query: 185 AFTINEYYSPNFLNTGAWGNYSSIIGKYTAPSTVFGSSGVGMYVSGEFGRQWLGTSDSFY 244
            F +NEYYSPNFLN+GAWGNYSSI GKYTAPST+FGSSGVGMYVSGEFGRQW GT+DSFY
Sbjct: 179 QFGLNEYYSPNFLNSGAWGNYSSITGKYTAPSTIFGSSGVGMYVSGEFGRQWFGTTDSFY 238

Query: 245 GVPAFPNGIKYADYNTWNIGIGFTYKVFTLDLRYSDTDMSKGDCSAFTSDFTAGGNTNVT 304
           GVPAFPNGI YADYNTWNIG+GFTYKVF LDLRYSDTD+SKG+CSAFT  F A G TNVT
Sbjct: 239 GVPAFPNGIHYADYNTWNIGVGFTYKVFALDLRYSDTDLSKGNCSAFTGSFNASGTTNVT 298

Query: 305 PINPGGTGSNWCGAAGIAKLSVDLTAMSNLK 335
           PINP GTGSNWCGAAGI KLS DLTAM++LK
Sbjct: 299 PINPLGTGSNWCGAAGIVKLSADLTAMTSLK 329


>ref|YP_001237782.1| hypothetical protein BBta_1666 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33876.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 330

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/331 (78%), Positives = 289/331 (87%), Gaps = 1/331 (0%)

Query: 5   MKKLALLATALAMISSSAMAADMAVKAVKAPPPAPFDPWDIAFGAGIMSDYIFRGVTQSN 64
           MKKLALLATALAM+S SA AADMAVKA+KAPP   FDPWDIAFGA IM+DY+FRG+TQSN
Sbjct: 1   MKKLALLATALAMMSGSASAADMAVKALKAPPAPAFDPWDIAFGAAIMNDYVFRGITQSN 60

Query: 65  HNPSVTAYFEPRYNVSKDLQLYVGTSTESISFANRAAAEVDVYGGIRPTFGAFAFDIGVW 124
           H PSV AYFEPR+NV+KDLQ Y+G + ESISF NRAAAE+DVYGGIRPTFGAFAFDIGVW
Sbjct: 61  HKPSVAAYFEPRFNVNKDLQFYIGVAGESISFPNRAAAEIDVYGGIRPTFGAFAFDIGVW 120

Query: 125 GYLYPGGTCYYGGGAVADFAGNPLSAECQANTLTNFNVMKKDVSFFEVYGKATWTINDNW 184
           GYLYPGGTC +GG    D +G    AEC AN L N N MKKDVSFFEVYGK  +T+NDNW
Sbjct: 121 GYLYPGGTCQFGGTGF-DASGRFQGAECAANALANGNTMKKDVSFFEVYGKMNYTVNDNW 179

Query: 185 AFTINEYYSPNFLNTGAWGNYSSIIGKYTAPSTVFGSSGVGMYVSGEFGRQWLGTSDSFY 244
            F + E+Y+P+FLN+GAWGNY+S+ GKYTAPSTVFGSSGVGMYVSGEFGRQW GT+DSFY
Sbjct: 180 TFGVTEFYTPSFLNSGAWGNYASVTGKYTAPSTVFGSSGVGMYVSGEFGRQWFGTTDSFY 239

Query: 245 GVPAFPNGIKYADYNTWNIGIGFTYKVFTLDLRYSDTDMSKGDCSAFTSDFTAGGNTNVT 304
           G  AFPNGIKYADYNTWNIG+GFTYKVFTLDLRYSDTD+SKG+C+AFT DFTAGG T+VT
Sbjct: 240 GTAAFPNGIKYADYNTWNIGVGFTYKVFTLDLRYSDTDLSKGNCNAFTGDFTAGGTTSVT 299

Query: 305 PINPGGTGSNWCGAAGIAKLSVDLTAMSNLK 335
           PINP G GS WCGA GIAKLSVDLTAM+NLK
Sbjct: 300 PINPTGLGSKWCGATGIAKLSVDLTAMTNLK 330


>ref|YP_001207987.1| hypothetical protein BRADO6120 [Bradyrhizobium sp. ORS 278]
 emb|CAL79772.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 330

 Score =  511 bits (1315), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/332 (77%), Positives = 283/332 (85%), Gaps = 3/332 (0%)

Query: 5   MKKLALLATALAMISSSAMAADMAVKAVKAPPPAPFDPWDIAFGAGIMSDYIFRGVTQSN 64
           MKKLALLATALAM S SA AADMAVKA+KAPP   FDPWDIAFG GI+SDY+FRG+TQSN
Sbjct: 1   MKKLALLATALAMFSGSASAADMAVKALKAPPAPAFDPWDIAFGGGIVSDYVFRGITQSN 60

Query: 65  HNPSVTAYFEPRYNVSKDLQLYVGTSTESISFANRAAAEVDVYGGIRPTFGAFAFDIGVW 124
           H PSVTAYFEPR+NV+KDLQ YVG + ESISF NRAAAE+DVYGGIRPTFGAFAFDIGVW
Sbjct: 61  HKPSVTAYFEPRFNVNKDLQFYVGVAGESISFTNRAAAEIDVYGGIRPTFGAFAFDIGVW 120

Query: 125 GYLYPGGTCYYGGGAVADFAGNPLSAECQANTLTNFNVMKKDVSFFEVYGKATWTINDNW 184
           GYLYPGGTC+YG  A  DF G P+ AEC AN L N N MKKDVSFFEVYGK T+T+NDNW
Sbjct: 121 GYLYPGGTCFYG--AATDFTGRPVGAECAANLLLNGNTMKKDVSFFEVYGKGTYTVNDNW 178

Query: 185 AFTINEYYSPNFLNTGAWGNYSSIIGKYTAPSTVFGSSGVGMYVSGEFGRQWLGTSDSFY 244
           AF + E+Y+P+FLN+GAWGNY+S   KYTAPST+FGSSGVGMYVSGEFGRQW G +DSFY
Sbjct: 179 AFGVTEFYTPSFLNSGAWGNYTSATAKYTAPSTLFGSSGVGMYVSGEFGRQWFGRTDSFY 238

Query: 245 GVPAFPNGIKYADYNTWNIGIGFTYKVFTLDLRYSDTDMSKGDCSAFTSDFTAG-GNTNV 303
           G PAFPNGI YADYNTWNIG+GFTYKVFTLDLRYSD+++SKGDCS FT  F A  G   V
Sbjct: 239 GTPAFPNGIHYADYNTWNIGVGFTYKVFTLDLRYSDSNLSKGDCSVFTGAFNAAVGTAPV 298

Query: 304 TPINPGGTGSNWCGAAGIAKLSVDLTAMSNLK 335
           T  NP G GSNWCGA GIAKLS DLTAM+NLK
Sbjct: 299 TGNNPFGAGSNWCGATGIAKLSFDLTAMTNLK 330


>ref|YP_578394.1| hypothetical protein Nham_3199 [Nitrobacter hamburgensis X14]
 gb|ABE63934.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 336

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 257/343 (74%), Positives = 276/343 (80%), Gaps = 19/343 (5%)

Query: 5   MKKLALLATALAMISSSAMAADMAVKAVKAPPPAPFDPWDIAFGAGIMSDYIFRGVTQSN 64
           MK + L AT LAM +SSA+AADMAV A KAPPP  FDPWDIAFGAG+MSDY+FRGVTQSN
Sbjct: 1   MKTMVLAATVLAMTASSALAADMAVNAYKAPPPVAFDPWDIAFGAGVMSDYVFRGVTQSN 60

Query: 65  HNPSVTAYFEPRYNVSKDLQLYVGTSTESISFANRAAAEVDVYGGIRPTFGAFAFDIGVW 124
           H PSVTAYFEPRYNV+KDLQLYVG+S ESISFANRAAAEVD+YGGIRPTFGAFAFD GVW
Sbjct: 61  HKPSVTAYFEPRYNVTKDLQLYVGSSVESISFANRAAAEVDIYGGIRPTFGAFAFDFGVW 120

Query: 125 GYLYPGGTCYYGGGAVADFAGNPLSAECQANT----LTNFNVMKKDVSFFEVYGKATWTI 180
           GYLYPGGTC        D A   L   C  +T    L N NVMKKDVSFFE Y K  +TI
Sbjct: 121 GYLYPGGTC-------VDTAAAGLGTLCPGDTGAIALFNGNVMKKDVSFFETYAKVNYTI 173

Query: 181 NDNWAFTINEYYSPNFLNTGAWGNYSSIIGKYTAPSTVFGSSGVGMYVSGEFGRQWLGTS 240
           NDNWA  +NEYYSPNFLNTGAWGNY+SI  KYTAP+T FGSSGVGMYVSGEFGRQWLGTS
Sbjct: 174 NDNWAVGLNEYYSPNFLNTGAWGNYASITAKYTAPATTFGSSGVGMYVSGEFGRQWLGTS 233

Query: 241 DSFYGVPA--------FPNGIKYADYNTWNIGIGFTYKVFTLDLRYSDTDMSKGDCSAFT 292
           DSFYG           FPNGIKYADYNTWNIGIG TYKVFTLDLRYSD+D+SKGDC+AFT
Sbjct: 234 DSFYGTGVAAAGFAGPFPNGIKYADYNTWNIGIGLTYKVFTLDLRYSDSDLSKGDCNAFT 293

Query: 293 SDFTAGGNTNVTPINPGGTGSNWCGAAGIAKLSVDLTAMSNLK 335
           SDF A  N + T INPGG GS WCGA  IAKLS DLTAM++LK
Sbjct: 294 SDFRAPLNGSFTNINPGGAGSTWCGATFIAKLSADLTAMTSLK 336


>ref|NP_774178.1| hypothetical protein bll7538 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52803.1| bll7538 [Bradyrhizobium japonicum USDA 110]
          Length = 340

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/346 (75%), Positives = 282/346 (81%), Gaps = 18/346 (5%)

Query: 1   MGIVMKKLALLATALAMISS-SAMAADMAVKAVKAPPPAPFDPWDIAFGAGIMSDYIFRG 59
           MGI MKK+ALLATALAM+++ SA AADMAVKA KAPP A FDPWDIAFG  ++SDYIFRG
Sbjct: 2   MGIEMKKVALLATALAMVTTGSAFAADMAVKAKKAPPVAAFDPWDIAFGGALVSDYIFRG 61

Query: 60  VTQSNHNPSVTAYFEPRYNVSKDLQLYVGTSTESISFANRAAAEVDVYGGIRPTFGAFAF 119
           VTQSNH PSV AYFEPRYNV+KDLQLY G S ESISFANRAAAEVDVYGGIRPTFGAFAF
Sbjct: 62  VTQSNHQPSVAAYFEPRYNVTKDLQLYAGVSAESISFANRAAAEVDVYGGIRPTFGAFAF 121

Query: 120 DIGVWGYLYPGGTCYYGGGAVAD---FAGNPLSAECQANTLTNF----NVMKKDVSFFEV 172
           D G+WGYLYPGG+C       AD     G P    C  +T T F    NVMKK+VSFFE 
Sbjct: 122 DFGIWGYLYPGGSC-------ADNVLTGGVPGGNVCAVSTTTIFLADGNVMKKNVSFFEG 174

Query: 173 YGKATWTINDNWAFTINEYYSPNFLNTGAWGNYSSIIGKYTAPSTVFGSSGVGMYVSGEF 232
           Y K  +TINDNWA  +NEYYSPNFLN+GAWGNY+S+  KYTAPSTVFG SGVGMYVSGEF
Sbjct: 175 YAKLNYTINDNWAVGVNEYYSPNFLNSGAWGNYASVTAKYTAPSTVFGPSGVGMYVSGEF 234

Query: 233 GRQWLGTSDSFYGVPA---FPNGIKYADYNTWNIGIGFTYKVFTLDLRYSDTDMSKGDCS 289
           GRQW GTSD+FYG  A   F NGI Y DYNTWN+GIGFTYKVFTLDLRYSDTD++KGDC+
Sbjct: 235 GRQWFGTSDAFYGTGAGTVFANGIPYKDYNTWNVGIGFTYKVFTLDLRYSDTDLNKGDCN 294

Query: 290 AFTSDFTAGGNTNVTPINPGGTGSNWCGAAGIAKLSVDLTAMSNLK 335
           AFTS F A G TNVTPINP G GSNWCGAAGIAKLS DLTAM+NLK
Sbjct: 295 AFTSAFNATGTTNVTPINPSGAGSNWCGAAGIAKLSFDLTAMTNLK 340