BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0195.0003.p (481 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774183.1| glycolate oxidase subunit [Bradyrhizobium japon... 880 0.0 ref|YP_001207996.1| glycolate oxidase subunit GlcD [Bradyrhizobi... 870 0.0 ref|YP_001237778.1| glycolate oxidase subunit GlcD [Bradyrhizobi... 870 0.0 ref|YP_319186.1| FAD linked oxidase [Nitrobacter winogradskyi Nb... 853 0.0 ref|ZP_01045220.1| FAD linked oxidase [Nitrobacter sp. Nb-311A] ... 849 0.0 >ref|NP_774183.1| glycolate oxidase subunit [Bradyrhizobium japonicum USDA 110] dbj|BAC52808.1| glycolate oxidase subunit [Bradyrhizobium japonicum USDA 110] Length = 497 Score = 880 bits (2274), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/494 (89%), Positives = 455/494 (92%), Gaps = 13/494 (2%) Query: 1 MRRAALALVAAALAEIAAALRAIVPGEGVIDSAAEMLAYESDGLTAYRQPPMVVVLPDTT 60 M A+ V A +EI AALRAIV GEGVIDSAAEM AYESDGLTAYRQPPMVVVLPDTT Sbjct: 4 MMPASDQAVLARRSEIVAALRAIVSGEGVIDSAAEMRAYESDGLTAYRQPPMVVVLPDTT 63 Query: 61 EQVSKVLKYCQGQGIKVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTE 120 EQVS +LKYC GQGIKVVPRGSGTSLSGGALPL DGVLLGLGKFKRIREIDFDNRVVVTE Sbjct: 64 EQVSLILKYCAGQGIKVVPRGSGTSLSGGALPLEDGVLLGLGKFKRIREIDFDNRVVVTE 123 Query: 121 PGVTNLAISQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIV 180 PGVTNLAISQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIV Sbjct: 124 PGVTNLAISQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIV 183 Query: 181 LMSGEILRIGGKSAENAGYDLMGIITGSEGLLGVITEITVRILQKPETARALMVGFAEVE 240 LMSGEILRIGGK ENAGYDLMG+ITGSEGLLGVITEITVRILQKPETARALMVGFAEVE Sbjct: 184 LMSGEILRIGGKGCENAGYDLMGVITGSEGLLGVITEITVRILQKPETARALMVGFAEVE 243 Query: 241 AAGECVARIIGA-------------GXHAAEAFVHAGYPLDVEALLIIELDGPQVEVDEL 287 AAGECVARIIGA HAAEAFVHAGYPLDVEALLIIELDGP++EVDEL Sbjct: 244 AAGECVARIIGAGIIPGGMEMMDKPAIHAAEAFVHAGYPLDVEALLIIELDGPKIEVDEL 303 Query: 288 IKRVEAIAQGCGSTSCQISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPK 347 I RVE IA CGST+CQISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPK Sbjct: 304 ITRVETIANACGSTTCQISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPK 363 Query: 348 ALARIRDLSEKYGLGVANVFHAGDGNLHPLILYDANKPGEIEKAEAFGADILRCCVELGG 407 ALARIR+LSEKY LG ANVFHAGDGNLHPLILYDANKPGEIE+AEAFGADILR CVE GG Sbjct: 364 ALARIRELSEKYQLGCANVFHAGDGNLHPLILYDANKPGEIERAEAFGADILRACVEFGG 423 Query: 408 VLTGEHGVGIEKRDLMPDMFTEIDLNQQQRLKCAFDAEGLLNPGKVFPTLHRCAELGRVH 467 VLTGEHGVGIEKRDLMP+MF+EIDLNQQQRLKCAFDA+GLLNPGKVFPTLHRCAELGR+H Sbjct: 424 VLTGEHGVGIEKRDLMPEMFSEIDLNQQQRLKCAFDAQGLLNPGKVFPTLHRCAELGRMH 483 Query: 468 VHAGKLAFPDIPRF 481 VHAGKLAFPDIPRF Sbjct: 484 VHAGKLAFPDIPRF 497 >ref|YP_001207996.1| glycolate oxidase subunit GlcD [Bradyrhizobium sp. ORS 278] emb|CAL79781.1| glycolate oxidase, subunit GlcD [Bradyrhizobium sp. ORS 278] Length = 497 Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/486 (88%), Positives = 449/486 (92%), Gaps = 13/486 (2%) Query: 9 VAAALAEIAAALRAIVPGEGVIDSAAEMLAYESDGLTAYRQPPMVVVLPDTTEQVSKVLK 68 V A +I AALRAIVPGEGVIDSAAEML YESDGL AYRQPPMVVVLP+TT QVS+VL+ Sbjct: 12 VLARRGDIVAALRAIVPGEGVIDSAAEMLPYESDGLMAYRQPPMVVVLPETTAQVSQVLR 71 Query: 69 YCQGQGIKVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAI 128 YC GQGIKVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAI Sbjct: 72 YCHGQGIKVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAI 131 Query: 129 SQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIVLMSGEILR 188 SQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCE+VLM+GE+LR Sbjct: 132 SQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCELVLMNGEVLR 191 Query: 189 IGGKSAENAGYDLMGIITGSEGLLGVITEITVRILQKPETARALMVGFAEVEAAGECVAR 248 IGGK ENAGYDLMG+ITGSEGLLGV+TE+TVRILQKPETARALMVGF +VEAAGECVAR Sbjct: 192 IGGKCTENAGYDLMGLITGSEGLLGVVTEVTVRILQKPETARALMVGFTQVEAAGECVAR 251 Query: 249 -------------IIGAGXHAAEAFVHAGYPLDVEALLIIELDGPQVEVDELIKRVEAIA 295 + HAAEAFVHAGYPLDVEALLIIELDGP VEVDELI RVEAIA Sbjct: 252 IIGAGIIPGGMEMMDKPAIHAAEAFVHAGYPLDVEALLIIELDGPGVEVDELISRVEAIA 311 Query: 296 QGCGSTSCQISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIRDL 355 GCGST+C+ISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIR+L Sbjct: 312 NGCGSTTCRISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIREL 371 Query: 356 SEKYGLGVANVFHAGDGNLHPLILYDANKPGEIEKAEAFGADILRCCVELGGVLTGEHGV 415 SEKY LG ANVFHAGDGNLHPLILYDANKPGE+E+AEAFGADILRCCVELGGVLTGEHGV Sbjct: 372 SEKYQLGCANVFHAGDGNLHPLILYDANKPGEMERAEAFGADILRCCVELGGVLTGEHGV 431 Query: 416 GIEKRDLMPDMFTEIDLNQQQRLKCAFDAEGLLNPGKVFPTLHRCAELGRVHVHAGKLAF 475 GIEKRDLMPDMFTEIDLNQQQR+KCAFD GLLNPGKVFPTLHRCAELGR+HVHAGKLAF Sbjct: 432 GIEKRDLMPDMFTEIDLNQQQRVKCAFDHLGLLNPGKVFPTLHRCAELGRMHVHAGKLAF 491 Query: 476 PDIPRF 481 PD+PRF Sbjct: 492 PDLPRF 497 >ref|YP_001237778.1| glycolate oxidase subunit GlcD [Bradyrhizobium sp. BTAi1] gb|ABQ33872.1| glycolate oxidase, subunit GlcD [Bradyrhizobium sp. BTAi1] Length = 497 Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/486 (88%), Positives = 451/486 (92%), Gaps = 13/486 (2%) Query: 9 VAAALAEIAAALRAIVPGEGVIDSAAEMLAYESDGLTAYRQPPMVVVLPDTTEQVSKVLK 68 V A +I AALRAIVPGEGVIDSAAEML YESDGL AYRQPPMVVVLP+TT QV+KVLK Sbjct: 12 VLARRDQIVAALRAIVPGEGVIDSAAEMLPYESDGLMAYRQPPMVVVLPETTAQVAKVLK 71 Query: 69 YCQGQGIKVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAI 128 YC QGIKVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAI Sbjct: 72 YCHEQGIKVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAI 131 Query: 129 SQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIVLMSGEILR 188 SQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIVL++GE+LR Sbjct: 132 SQAVAHAGFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIVLINGEVLR 191 Query: 189 IGGKSAENAGYDLMGIITGSEGLLGVITEITVRILQKPETARALMVGFAEVEAAGECVAR 248 IGGK AENAGYDLMG+ITGSEGLLGV+TE+TVRILQKPETARALMVGF+EVEAAGECVAR Sbjct: 192 IGGKCAENAGYDLMGLITGSEGLLGVVTEVTVRILQKPETARALMVGFSEVEAAGECVAR 251 Query: 249 -------------IIGAGXHAAEAFVHAGYPLDVEALLIIELDGPQVEVDELIKRVEAIA 295 + HAAEAFVHAGYPLDVEALLIIELDGP VEVDELI RVEAIA Sbjct: 252 IIGAGIIPGGMEMMDKPAIHAAEAFVHAGYPLDVEALLIIELDGPGVEVDELIGRVEAIA 311 Query: 296 QGCGSTSCQISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIRDL 355 GCGST+C+ISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIR+L Sbjct: 312 NGCGSTTCRISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIREL 371 Query: 356 SEKYGLGVANVFHAGDGNLHPLILYDANKPGEIEKAEAFGADILRCCVELGGVLTGEHGV 415 SEKY LG ANVFHAGDGNLHPLILYDANKPGE+E+AEAFGADILRCCVELGGVLTGEHGV Sbjct: 372 SEKYQLGCANVFHAGDGNLHPLILYDANKPGEMERAEAFGADILRCCVELGGVLTGEHGV 431 Query: 416 GIEKRDLMPDMFTEIDLNQQQRLKCAFDAEGLLNPGKVFPTLHRCAELGRVHVHAGKLAF 475 GIEKRDLMPDMFTEIDLNQQQR+KCAFD++GLLNPGKVFPTLHRCAELGR+HVH G+LAF Sbjct: 432 GIEKRDLMPDMFTEIDLNQQQRVKCAFDSQGLLNPGKVFPTLHRCAELGRMHVHGGRLAF 491 Query: 476 PDIPRF 481 PD+PRF Sbjct: 492 PDLPRF 497 >ref|YP_319186.1| FAD linked oxidase [Nitrobacter winogradskyi Nb-255] gb|ABA05834.1| FAD linked oxidase [Nitrobacter winogradskyi Nb-255] Length = 497 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/479 (87%), Positives = 446/479 (93%), Gaps = 13/479 (2%) Query: 16 IAAALRAIVPGEGVIDSAAEMLAYESDGLTAYRQPPMVVVLPDTTEQVSKVLKYCQGQGI 75 I A LRAIVPGEGVI SAAEML YESD LTAYRQPPMVVVLP+TTEQVS+VLKYC GI Sbjct: 19 IVADLRAIVPGEGVIASAAEMLPYESDALTAYRQPPMVVVLPETTEQVSRVLKYCFDNGI 78 Query: 76 KVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAISQAVAHA 135 KVVPRGSGTSLSGGALPLAD VLLGLGKFKRIREIDFDNRVVVTEPGVTNLAISQAVAHA Sbjct: 79 KVVPRGSGTSLSGGALPLADAVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAISQAVAHA 138 Query: 136 GFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIVLMSGEILRIGGKSAE 195 GFYYAPDPSSQIACSIGGN+AENSGGVHCLKYGMTTNNVLGCE+VLMSGE+LRIGGK+ E Sbjct: 139 GFYYAPDPSSQIACSIGGNIAENSGGVHCLKYGMTTNNVLGCELVLMSGEVLRIGGKAPE 198 Query: 196 NAGYDLMGIITGSEGLLGVITEITVRILQKPETARALMVGFAEVEAAGECVARIIGAG-- 253 AGYDLMGIITGSEGLLGV+TE+TVRIL+KPETARALMVGF++VEAAGECVAR+IGAG Sbjct: 199 QAGYDLMGIITGSEGLLGVVTEVTVRILRKPETARALMVGFSQVEAAGECVARVIGAGII 258 Query: 254 -----------XHAAEAFVHAGYPLDVEALLIIELDGPQVEVDELIKRVEAIAQGCGSTS 302 HAAEAFV+AGYPLDVEALLIIELDG +EVDELIKRVEAIA GCGST+ Sbjct: 259 PGGMEMMDRPAIHAAEAFVNAGYPLDVEALLIIELDGSSIEVDELIKRVEAIALGCGSTT 318 Query: 303 CQISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIRDLSEKYGLG 362 C+IS SEAER+LFWAGRKAAFPAVGRISPDY+CMDGTIPRGALP+ALARIR+LSEKYGLG Sbjct: 319 CRISGSEAERDLFWAGRKAAFPAVGRISPDYICMDGTIPRGALPRALARIRELSEKYGLG 378 Query: 363 VANVFHAGDGNLHPLILYDANKPGEIEKAEAFGADILRCCVELGGVLTGEHGVGIEKRDL 422 VANVFHAGDGNLHPLILYDANKPGE++KAEAFGADILRCCVELGGVLTGEHGVGIEKR+L Sbjct: 379 VANVFHAGDGNLHPLILYDANKPGEMDKAEAFGADILRCCVELGGVLTGEHGVGIEKREL 438 Query: 423 MPDMFTEIDLNQQQRLKCAFDAEGLLNPGKVFPTLHRCAELGRVHVHAGKLAFPDIPRF 481 MP MF+E DL+QQQRLKCAFDA+GLLNPGKVFPTLHRCAELGRVHVH G+L FPD+PRF Sbjct: 439 MPHMFSEADLSQQQRLKCAFDAQGLLNPGKVFPTLHRCAELGRVHVHGGRLPFPDLPRF 497 >ref|ZP_01045220.1| FAD linked oxidase [Nitrobacter sp. Nb-311A] gb|EAQ36548.1| FAD linked oxidase [Nitrobacter sp. Nb-311A] Length = 497 Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/479 (86%), Positives = 441/479 (92%), Gaps = 13/479 (2%) Query: 16 IAAALRAIVPGEGVIDSAAEMLAYESDGLTAYRQPPMVVVLPDTTEQVSKVLKYCQGQGI 75 I A LR IVPGEGVI SAAEML YESD LTAYRQPPMVVVLP+TTEQVS+VLKYC GI Sbjct: 19 IVADLRGIVPGEGVISSAAEMLPYESDALTAYRQPPMVVVLPETTEQVSRVLKYCFDNGI 78 Query: 76 KVVPRGSGTSLSGGALPLADGVLLGLGKFKRIREIDFDNRVVVTEPGVTNLAISQAVAHA 135 KVVPRGSGTSLSGGALPLAD VLLGLGKFKRIREIDFDNRVV+TEPGVTNLAISQAVAHA Sbjct: 79 KVVPRGSGTSLSGGALPLADAVLLGLGKFKRIREIDFDNRVVITEPGVTNLAISQAVAHA 138 Query: 136 GFYYAPDPSSQIACSIGGNVAENSGGVHCLKYGMTTNNVLGCEIVLMSGEILRIGGKSAE 195 GFYYAPDPSSQIACSIGGN+AENSGGVHCLKYGMTTNNVLGC++VLMSGE+LRIGGK+ E Sbjct: 139 GFYYAPDPSSQIACSIGGNIAENSGGVHCLKYGMTTNNVLGCQLVLMSGEVLRIGGKAPE 198 Query: 196 NAGYDLMGIITGSEGLLGVITEITVRILQKPETARALMVGFAEVEAAGECVARIIGAG-- 253 AGYDLMGIITGSEGLLGV+TE+TVRIL+KPETARALMVGF++VEAAGECVARIIGAG Sbjct: 199 QAGYDLMGIITGSEGLLGVVTEVTVRILRKPETARALMVGFSQVEAAGECVARIIGAGII 258 Query: 254 -----------XHAAEAFVHAGYPLDVEALLIIELDGPQVEVDELIKRVEAIAQGCGSTS 302 HAAEAFV AGYPLDVEALLIIELDG +EV+ELI+RVEAIA GCGSTS Sbjct: 259 PAGMEMMDRPAIHAAEAFVKAGYPLDVEALLIIELDGSSIEVNELIQRVEAIALGCGSTS 318 Query: 303 CQISTSEAERNLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPKALARIRDLSEKYGLG 362 C+IS SEAER+LFWAGRKAAFPAVGRISPDYLCMDGTIPRGALP+AL RIRDL EKYGLG Sbjct: 319 CRISGSEAERDLFWAGRKAAFPAVGRISPDYLCMDGTIPRGALPRALVRIRDLGEKYGLG 378 Query: 363 VANVFHAGDGNLHPLILYDANKPGEIEKAEAFGADILRCCVELGGVLTGEHGVGIEKRDL 422 VANVFHAGDGNLHPLILYDANKPGE++KAE FGADILRCCVELGGVLTGEHGVGIEKRDL Sbjct: 379 VANVFHAGDGNLHPLILYDANKPGEMDKAEEFGADILRCCVELGGVLTGEHGVGIEKRDL 438 Query: 423 MPDMFTEIDLNQQQRLKCAFDAEGLLNPGKVFPTLHRCAELGRVHVHAGKLAFPDIPRF 481 MP MF+E DLNQQQR+KCAFDA GLLNPGKVFPTLHRCAELGRVHVH GKLAFP++PRF Sbjct: 439 MPHMFSEADLNQQQRVKCAFDARGLLNPGKVFPTLHRCAELGRVHVHGGKLAFPELPRF 497