BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0028.p         (74 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57551.1| NopB protein [Bradyrhizobium elkanii]                 144   3e-33
gb|AAG60795.1|AF322012_100 NolB [Bradyrhizobium japonicum]            103   6e-21
ref|NP_768452.1| nodulation protein [Bradyrhizobium japonicum US...   103   7e-21
ref|NP_444157.1| nodulation protein NopB [Sinorhizobium fredii N...    52   2e-05
ref|NP_106862.1| hypothetical protein mlr8763 [Mesorhizobium lot...    52   2e-05

>emb|CAQ57551.1| NopB protein [Bradyrhizobium elkanii]
          Length = 172

 Score =  144 bits (364), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 1   VSSAPSVIQPGPAAQPLLQPLDIGAHETVKPVAADFDSMVVNLRDVYRDVVQVSLVSKST 60
           VSSAPSVIQPGPAAQPLLQPLDIGAHETVKPVAADFDSMVVNLRDVYRDVVQVSLVSKST
Sbjct: 99  VSSAPSVIQPGPAAQPLLQPLDIGAHETVKPVAADFDSMVVNLRDVYRDVVQVSLVSKST 158

Query: 61  SAVSSSLNKLLSAG 74
           SAVSSSLNKLLSAG
Sbjct: 159 SAVSSSLNKLLSAG 172


>gb|AAG60795.1|AF322012_100 NolB [Bradyrhizobium japonicum]
          Length = 166

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/67 (77%), Positives = 58/67 (86%)

Query: 8   IQPGPAAQPLLQPLDIGAHETVKPVAADFDSMVVNLRDVYRDVVQVSLVSKSTSAVSSSL 67
           +QPGPAAQPLL   + GA+  VKPV ADF+SM+ NLRDVY+DVVQVSLVSK TSAVSSSL
Sbjct: 100 VQPGPAAQPLLPADNAGANAAVKPVGADFESMMTNLRDVYKDVVQVSLVSKGTSAVSSSL 159

Query: 68  NKLLSAG 74
           NKLLSAG
Sbjct: 160 NKLLSAG 166


>ref|NP_768452.1| nodulation protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47077.1| nodulation protein [Bradyrhizobium japonicum USDA 110]
          Length = 170

 Score =  103 bits (258), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 3/74 (4%)

Query: 4   APSVI---QPGPAAQPLLQPLDIGAHETVKPVAADFDSMVVNLRDVYRDVVQVSLVSKST 60
           AP+V+   QPGPAAQPLL   + GA+  VKPV ADF+SM+ NLRDVY+DVVQVSLVSK T
Sbjct: 97  APAVVNGVQPGPAAQPLLPADNAGANAAVKPVGADFESMMTNLRDVYKDVVQVSLVSKGT 156

Query: 61  SAVSSSLNKLLSAG 74
           SAVSSSLNKLLSAG
Sbjct: 157 SAVSSSLNKLLSAG 170


>ref|NP_444157.1| nodulation protein NopB [Sinorhizobium fredii NGR234]
 sp|P55713.1|NOLB_RHISN RecName: Full=Nodulation protein nolB
 gb|AAB91944.1| nodulation outer protein NopB; precursor of type III secretion
           pilus subunit [Sinorhizobium fredii NGR234]
          Length = 164

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 29/40 (72%)

Query: 35  DFDSMVVNLRDVYRDVVQVSLVSKSTSAVSSSLNKLLSAG 74
           DFD MV  LRD+Y  V QV+LVSK  S ++SS+NKLL  G
Sbjct: 125 DFDVMVAGLRDLYNGVTQVALVSKGISGITSSVNKLLKEG 164


>ref|NP_106862.1| hypothetical protein mlr8763 [Mesorhizobium loti MAFF303099]
 dbj|BAB52648.1| mlr8763 [Mesorhizobium loti MAFF303099]
          Length = 167

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 35  DFDSMVVNLRDVYRDVVQVSLVSKSTSAVSSSLNKLLSAG 74
           DF++M+  LRD+Y  V QV+LVSK  S ++SS+NKLL  G
Sbjct: 128 DFETMIAGLRDMYNGVTQVALVSKGVSGITSSVNKLLKEG 167