BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0194.0023.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii] 462 e-128 ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110... 350 7e-95 gb|AAB17683.1| putative [Sinorhizobium fredii] >gi|19749327|gb|A... 270 1e-70 ref|NP_444163.1| type III secretion apparatus subunit RhcQ [Sino... 266 1e-69 ref|NP_106868.1| translocation protein in type III secretion sys... 261 4e-68 >emb|CAQ57545.1| RhcQ protein [Bradyrhizobium elkanii] Length = 371 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 233/233 (100%), Positives = 233/233 (100%) Query: 1 MQRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLP 60 MQRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLP Sbjct: 139 MQRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLP 198 Query: 61 RQTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPA 120 RQTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPA Sbjct: 199 RQTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPA 258 Query: 121 KIAGERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGT 180 KIAGERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGT Sbjct: 259 KIAGERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGT 318 Query: 181 LRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND 233 LRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND Sbjct: 319 LRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND 371 >ref|NP_768458.1| RhcQ protein [Bradyrhizobium japonicum USDA 110] gb|AAG60801.1|AF322012_106 RhcQ [Bradyrhizobium japonicum] dbj|BAC47083.1| RhcQ protein [Bradyrhizobium japonicum USDA 110] Length = 373 Score = 350 bits (899), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 178/233 (76%), Positives = 201/233 (86%), Gaps = 1/233 (0%) Query: 2 QRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLPR 61 QRNLQL+RT+EA + PYLEFDVAYG+LASK RLLLFS D VPPAF+VLGELLGRLPR Sbjct: 141 QRNLQLVRTEEARSTQPYLEFDVAYGELASKARLLLFSPFDGPVPPAFTVLGELLGRLPR 200 Query: 62 QTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPAK 121 Q +L SELPVIVAG +GSLR+ IG++RQA++GDALLPD IPLARGQ++L A LWAPA+ Sbjct: 201 QAARLLSELPVIVAGHIGSLRVAIGVLRQAEQGDALLPDTIPLARGQIVLVADRLWAPAE 260 Query: 122 IAGERLVLRGPFRSQSHPLKSGHM-TTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGT 180 I G+RLVLRGPFR +SHPLKS + QQ PSEADIDS+EITLVFECGRWPM +GT Sbjct: 261 IGGDRLVLRGPFRLRSHPLKSEDVMPQNQMQQQPPSEADIDSIEITLVFECGRWPMPLGT 320 Query: 181 LRSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND 233 LR+INEGHVFELGR LDGPVDI+ANGQRIGRGDIVRIGEELAVRLRGRL +ND Sbjct: 321 LRTINEGHVFELGRHLDGPVDIVANGQRIGRGDIVRIGEELAVRLRGRLALND 373 >gb|AAB17683.1| putative [Sinorhizobium fredii] gb|AAL98697.1| Y4yK [Sinorhizobium fredii] gb|AAU85370.1| RhcQ [Sinorhizobium fredii] Length = 382 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 134/232 (57%), Positives = 170/232 (73%), Gaps = 1/232 (0%) Query: 2 QRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLPR 61 R L LLR +A PY+E ++ +G ++ K RL LFS LD LVP AF L ELLG+LPR Sbjct: 152 NRTLHLLRVGKAITLAPYVELEIVFGSVSGKGRLSLFSPLDGLVPFAFRALAELLGQLPR 211 Query: 62 QTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPAK 121 Q +L +LPVI+AG++G+LR + L+R+A GDALLPD P RGQ+ L+ LW A Sbjct: 212 QPRELSPDLPVIIAGEIGTLRASAALLRKASVGDALLPDISPFGRGQIALSVGQLWTRAD 271 Query: 122 IAGERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGTL 181 + G+ LVLRGPFR QS PL+ HM T+ ++Q PS+AD+D +EI LVFECGRWP+S+G L Sbjct: 272 LEGDHLVLRGPFRPQSRPLEYAHM-TETESQLRPSDADLDDIEIVLVFECGRWPISLGDL 330 Query: 182 RSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND 233 RS +GHVFELGR +DG VDI+ANG+ IGRGDIVRIG+EL +RLRGRL ND Sbjct: 331 RSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDELGIRLRGRLACND 382 >ref|NP_444163.1| type III secretion apparatus subunit RhcQ [Sinorhizobium fredii NGR234] sp|P55719.1|Y4YK_RHISN RecName: Full=Probable translocation protein Y4yK gb|AAB91950.1| component RhcQ of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 358 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/232 (57%), Positives = 168/232 (72%), Gaps = 1/232 (0%) Query: 2 QRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLPR 61 R L LLR +A PY+E ++ G ++ K RL LFS LD LVP AF L ELL +LPR Sbjct: 128 NRTLHLLRVGKAITLAPYVELEIVIGPVSGKGRLFLFSPLDGLVPFAFRALAELLAQLPR 187 Query: 62 QTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPAK 121 Q +L ELPVI+AG++G+LR + L+R+A GDALLPD P RGQ+ L+ LW A Sbjct: 188 QPRELSPELPVIIAGEIGTLRASAALLRKASVGDALLPDISPFGRGQIALSVGQLWTRAD 247 Query: 122 IAGERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGTL 181 + G+ LVLRGPFR QS PL+ HM T+ ++Q PS+AD+D +EI LVFECGRWP+S+G L Sbjct: 248 LEGDHLVLRGPFRPQSRPLECAHM-TEIESQLRPSDADLDDIEIVLVFECGRWPISLGEL 306 Query: 182 RSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND 233 RS +GHVFELGR +DG VDI+ANG+ IGRGDIVRIG++L +RLRGRL ND Sbjct: 307 RSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDDLGIRLRGRLACND 358 >ref|NP_106868.1| translocation protein in type III secretion system, hrcQ [Mesorhizobium loti MAFF303099] dbj|BAB52654.1| translocation protein in type III secretion system; HrcQ [Mesorhizobium loti MAFF303099] Length = 354 Score = 261 bits (668), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 132/232 (56%), Positives = 169/232 (72%), Gaps = 2/232 (0%) Query: 2 QRNLQLLRTDEAAKSGPYLEFDVAYGQLASKVRLLLFSSLDALVPPAFSVLGELLGRLPR 61 Q N+QL+R EAA PYLE D+ +G ++ K RL LFS LD LVP AF LGEL G+LPR Sbjct: 125 QLNVQLVRVFEAATLAPYLELDIDFGPVSGKGRLFLFSPLDGLVPSAFRALGELFGQLPR 184 Query: 62 QTPKLHSELPVIVAGQVGSLRITIGLVRQAQRGDALLPDAIPLARGQVILTASALWAPAK 121 Q L S+LP++VAG++G+L + ++R+A GDALLPD P RG++ L+ LWA A Sbjct: 185 QPRGLLSDLPIVVAGEIGTLHVPAAILRKACAGDALLPDLAPFGRGEIALSLGQLWASAD 244 Query: 122 IAGERLVLRGPFRSQSHPLKSGHMTTQPQAQQLPSEADIDSLEITLVFECGRWPMSIGTL 181 + G++LVL GPFR +S+ L++ HM TQ +Q P+E D+D +EI LVFECGRWP+ +G L Sbjct: 245 LEGDQLVLHGPFRPRSYSLENAHM-TQLGSQLGPTE-DLDDVEIMLVFECGRWPIPLGEL 302 Query: 182 RSINEGHVFELGRSLDGPVDILANGQRIGRGDIVRIGEELAVRLRGRLTVND 233 RS EGH+FELGR + PVDILANGQ IGRGDIVRIG+ L +RLRGRL ND Sbjct: 303 RSAGEGHIFELGRPIQDPVDILANGQCIGRGDIVRIGDTLGIRLRGRLGCND 354