BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0022.p         (221 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57544.1| RHCR protein [Bradyrhizobium elkanii]                 444   e-123
ref|NP_768459.1| type III secretion system protein [Bradyrhizobi...   433   e-120
ref|NP_106869.1| type III secretion system protein [Mesorhizobiu...   353   1e-95
ref|NP_444164.1| type III secretion system protein [Sinorhizobiu...   352   2e-95
gb|AAB17684.1| putative [Sinorhizobium fredii]                        352   3e-95

>emb|CAQ57544.1| RHCR protein [Bradyrhizobium elkanii]
          Length = 221

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/221 (100%), Positives = 221/221 (100%)

Query: 1   MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA 60
           MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA
Sbjct: 1   MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA 60

Query: 61  LILTVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFL 120
           LILTVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFL
Sbjct: 61  LILTVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFL 120

Query: 121 SSAEHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM 180
           SSAEHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM
Sbjct: 121 SSAEHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM 180

Query: 181 GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG 221
           GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG
Sbjct: 181 GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG 221


>ref|NP_768459.1| type III secretion system protein [Bradyrhizobium japonicum USDA
           110]
 gb|AAG60802.1|AF322012_107 RhcR [Bradyrhizobium japonicum]
 dbj|BAC47084.1| RhcR protein [Bradyrhizobium japonicum USDA 110]
          Length = 221

 Score =  433 bits (1114), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/221 (97%), Positives = 216/221 (97%)

Query: 1   MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA 60
           MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA
Sbjct: 1   MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA 60

Query: 61  LILTVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFL 120
           LILTVFISAPVFEQTYNRLTDPQLRYQ+FDDWV AAKEGQEPLR HLKKFTNEEQRRFFL
Sbjct: 61  LILTVFISAPVFEQTYNRLTDPQLRYQSFDDWVMAAKEGQEPLRVHLKKFTNEEQRRFFL 120

Query: 121 SSAEHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM 180
           SS EHVWSEEMRGS TADDF ILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM
Sbjct: 121 SSTEHVWSEEMRGSVTADDFSILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM 180

Query: 181 GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG 221
           GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG
Sbjct: 181 GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG 221


>ref|NP_106869.1| type III secretion system protein [Mesorhizobium loti MAFF303099]
 dbj|BAB52655.1| translocation protein in type III secretion system; HrcR
           [Mesorhizobium loti MAFF303099]
          Length = 221

 Score =  353 bits (906), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 181/221 (81%), Positives = 195/221 (88%)

Query: 1   MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA 60
           MTE+QP ILALLA+T GLGLL   VVTTTAF+KVSVVLFLVRNALGTQ+IPPNI LY  A
Sbjct: 1   MTELQPPILALLAVTAGLGLLVLVVVTTTAFVKVSVVLFLVRNALGTQTIPPNIALYAVA 60

Query: 61  LILTVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFL 120
           LILT+F+SAPV EQTY+R+TDP+L YQTFDDWV+AAK G EPLR HLKKFTNEEQR+FFL
Sbjct: 61  LILTMFLSAPVVEQTYDRMTDPKLHYQTFDDWVSAAKSGSEPLRDHLKKFTNEEQRQFFL 120

Query: 121 SSAEHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM 180
           SS E VW  EMR  AT DD  ILVPSFLISELKR FEIGFLLYLPFI IDLIVTTILMAM
Sbjct: 121 SSTEKVWPAEMRAKATVDDLSILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAM 180

Query: 181 GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG 221
           GMSMVSPT+ISVPFKLF+FV IDGWS+LMHGLVLSYT PGG
Sbjct: 181 GMSMVSPTLISVPFKLFVFVAIDGWSKLMHGLVLSYTIPGG 221


>ref|NP_444164.1| type III secretion system protein [Sinorhizobium fredii NGR234]
 sp|P55720.1|Y4YL_RHISN RecName: Full=Probable translocation protein y4yL
 gb|AAB91951.1| innermembrane protein RhcR; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 222

 Score =  352 bits (904), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/221 (82%), Positives = 196/221 (88%)

Query: 1   MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA 60
           MTE+QP+ILALLAIT  LGLL  AVVTTTAF+KVSVVLFLVRNALGTQ+IPPNIVLY AA
Sbjct: 1   MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAA 60

Query: 61  LILTVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFL 120
           LILT+F+SAPV EQTY+R+TDP+LRYQ+ DDW  AAK G +PL  HLKKFTNEEQRRFFL
Sbjct: 61  LILTMFVSAPVAEQTYDRITDPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFL 120

Query: 121 SSAEHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM 180
           SS E VW EEMR   TADDF ILVPSFLISELKR FEIGFLLYLPFI IDLIVTTILMAM
Sbjct: 121 SSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAM 180

Query: 181 GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG 221
           GMSMVSPT+I+VPFKLFLFV IDGWSRLMHGLVLSYT PG 
Sbjct: 181 GMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGA 221


>gb|AAB17684.1| putative [Sinorhizobium fredii]
          Length = 249

 Score =  352 bits (903), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 182/221 (82%), Positives = 196/221 (88%)

Query: 1   MTEIQPSILALLAITVGLGLLAFAVVTTTAFIKVSVVLFLVRNALGTQSIPPNIVLYGAA 60
           MTE+QP+ILALLAIT  LGLL  AVVTTTAF+KVSVVLFLVRNALGTQ+IPPNIVLY AA
Sbjct: 28  MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAA 87

Query: 61  LILTVFISAPVFEQTYNRLTDPQLRYQTFDDWVTAAKEGQEPLRAHLKKFTNEEQRRFFL 120
           LILT+F+SAP+ EQTY+R+TDP+LRYQ+ DDW  AAK G +PL  HLKKFTNEEQRRFFL
Sbjct: 88  LILTMFVSAPIAEQTYDRITDPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFL 147

Query: 121 SSAEHVWSEEMRGSATADDFVILVPSFLISELKRGFEIGFLLYLPFITIDLIVTTILMAM 180
           SS E VW EEMR   TADDF ILVPSFLISELKR FEIGFLLYLPFI IDLIVTTILMAM
Sbjct: 148 SSTEKVWPEEMRARVTADDFAILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAM 207

Query: 181 GMSMVSPTVISVPFKLFLFVTIDGWSRLMHGLVLSYTTPGG 221
           GMSMVSPT+I+VPFKLFLFV IDGWSRLMHGLVLSYT PG 
Sbjct: 208 GMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGA 248