BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0194.0020.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ57542.1| RHCT protein [Bradyrhizobium elkanii] 536 e-150 ref|NP_768461.1| RhcT protein [Bradyrhizobium japonicum USDA 110... 488 e-136 ref|NP_106871.1| translocation protein in type III secretion sys... 316 3e-84 gb|AAB17686.1| putative [Sinorhizobium fredii] >gi|19749330|gb|A... 297 1e-78 ref|NP_444166.1| inner membrane protein RhcT; component of type ... 295 6e-78 >emb|CAQ57542.1| RHCT protein [Bradyrhizobium elkanii] Length = 273 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%) Query: 1 MAGLSPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLP 60 MAGLSPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLP Sbjct: 1 MAGLSPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLP 60 Query: 61 CLPQIKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGIS 120 CLPQIKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGIS Sbjct: 61 CLPQIKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGIS 120 Query: 121 SQVAAEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTA 180 SQVAAEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTA Sbjct: 121 SQVAAEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTA 180 Query: 181 QGAMECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFG 240 QGAMECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFG Sbjct: 181 QGAMECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFG 240 Query: 241 VIMVSYTVYLLEYAGAEILTSNNVLEHFKKLLK 273 VIMVSYTVYLLEYAGAEILTSNNVLEHFKKLLK Sbjct: 241 VIMVSYTVYLLEYAGAEILTSNNVLEHFKKLLK 273 >ref|NP_768461.1| RhcT protein [Bradyrhizobium japonicum USDA 110] gb|AAG60804.1|AF322012_109 RhcT [Bradyrhizobium japonicum] dbj|BAC47086.1| RhcT protein [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 488 bits (1255), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/273 (88%), Positives = 259/273 (94%) Query: 1 MAGLSPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLP 60 MAGLSP +A LVQG IE AATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLP Sbjct: 1 MAGLSPAEAQVLVQGSIEFVAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLP 60 Query: 61 CLPQIKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGIS 120 CL QIKLGL+ALDPNTRLVSV MLG+KEVFVGL+LGILLSIPLWSIQAVGDIIDTQRGIS Sbjct: 61 CLAQIKLGLQALDPNTRLVSVTMLGVKEVFVGLMLGILLSIPLWSIQAVGDIIDTQRGIS 120 Query: 121 SQVAAEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTA 180 SQVA EDPATHSQA+GTGLFLGVTAVTIFVLVGGLQTMVS LYGSYL+WPVY+FLPA+T Sbjct: 121 SQVAGEDPATHSQATGTGLFLGVTAVTIFVLVGGLQTMVSGLYGSYLVWPVYQFLPALTV 180 Query: 181 QGAMECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFG 240 QGAMECLALLD IM+TTLLVAGPVLALLLL+D+SVMMLGRFASQLK+NDLSP IKNVAFG Sbjct: 181 QGAMECLALLDRIMMTTLLVAGPVLALLLLVDISVMMLGRFASQLKMNDLSPMIKNVAFG 240 Query: 241 VIMVSYTVYLLEYAGAEILTSNNVLEHFKKLLK 273 VIMVSYTVYLLEYAG+EILTSN++L+H +KLLK Sbjct: 241 VIMVSYTVYLLEYAGSEILTSNDMLDHLRKLLK 273 >ref|NP_106871.1| translocation protein in type III secretion system, hrcT [Mesorhizobium loti MAFF303099] dbj|BAB52657.1| translocation protein in type III secretion system; HrcT [Mesorhizobium loti MAFF303099] Length = 272 Score = 316 bits (809), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 155/269 (57%), Positives = 193/269 (71%) Query: 5 SPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLPQ 64 SP + L+ IEL A GL AARA+GIM++LPVFTR + GLIRG L + GLPCL Sbjct: 4 SPAEIQILMHTAIELVVAAGLGAARAIGIMMILPVFTRSQTDGLIRGCLAVGFGLPCLAH 63 Query: 65 IKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQVA 124 + L+ALDP TRL+ VA+LGLKEV VG LLG L IPLW +QA G+ ID QRG+++ A Sbjct: 64 VSDALQALDPETRLIEVALLGLKEVLVGALLGTFLGIPLWGLQAAGEFIDNQRGVTNPSA 123 Query: 125 AEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGAM 184 DPAT+SQAS G+FLG+TA+ IFV GGL+T++ +LYGSYLIWPVY+F P ++ QGAM Sbjct: 124 PTDPATNSQASAMGVFLGITAIAIFVASGGLETLIGALYGSYLIWPVYKFYPTLSTQGAM 183 Query: 185 ECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFGVIMV 244 E L LLD IM T LLV+GPV+ + LIDVS M+L RFA Q KL LSP IKN+ F ++MV Sbjct: 184 EVLGLLDQIMRTALLVSGPVVFFMTLIDVSFMLLRRFAPQFKLTQLSPAIKNLVFPILMV 243 Query: 245 SYTVYLLEYAGAEILTSNNVLEHFKKLLK 273 +Y YL+E EI +N LE F +LLK Sbjct: 244 TYAGYLVEGMKLEITQANGALEWFDRLLK 272 >gb|AAB17686.1| putative [Sinorhizobium fredii] gb|AAL98700.1| Y4yN [Sinorhizobium fredii] Length = 272 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 162/270 (60%), Positives = 196/270 (72%) Query: 4 LSPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLP 63 LSP + L+ IEL AA GL AARALGIML+LPVFTR +I GLIRG L IA GLPCL Sbjct: 3 LSPAEIQILLHAAIELVAAAGLGAARALGIMLILPVFTRSQIGGLIRGCLAIAFGLPCLA 62 Query: 64 QIKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQV 123 + GL+ALDP T L+ + +LGLKEVFVG+LLG L IPLW +QA G+ ID QRGI+S Sbjct: 63 HVSDGLQALDPETSLIQIPLLGLKEVFVGVLLGTFLGIPLWGLQAAGEFIDNQRGITSPS 122 Query: 124 AAEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGA 183 DPAT SQAS G+FLG+TA+TIFV GG++ ++S+LYGSY IWPVYRF P+++ QGA Sbjct: 123 TQADPATSSQASAMGVFLGITAITIFVAAGGVEAVLSALYGSYSIWPVYRFQPSLSTQGA 182 Query: 184 MECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFGVIM 243 +E LLDHIM TTLLV+GPV+ L LID+S+MML RFA Q K LSP IKN+ F +IM Sbjct: 183 VELFGLLDHIMRTTLLVSGPVVFFLGLIDISMMMLRRFAPQFKSGQLSPPIKNIVFPIIM 242 Query: 244 VSYTVYLLEYAGAEILTSNNVLEHFKKLLK 273 V+Y YLLE EI ++ L KLLK Sbjct: 243 VTYATYLLEGIKLEITQADGTLGWLDKLLK 272 >ref|NP_444166.1| inner membrane protein RhcT; component of type III secretion apparatus [Sinorhizobium fredii NGR234] sp|P55722.1|Y4YN_RHISN RecName: Full=Probable translocation protein y4yN gb|AAB91953.1| innermembrane protein RhcT; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 272 Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 161/270 (59%), Positives = 195/270 (72%) Query: 4 LSPTDAHALVQGGIELAAATGLSAARALGIMLVLPVFTRPRISGLIRGSLTIAIGLPCLP 63 LSP + L+ IEL AA GL AARALGIML+LPVFTR +I GLIRG L IA GLPCL Sbjct: 3 LSPAEIQILLHAAIELVAAAGLGAARALGIMLILPVFTRSQIGGLIRGCLAIAFGLPCLA 62 Query: 64 QIKLGLEALDPNTRLVSVAMLGLKEVFVGLLLGILLSIPLWSIQAVGDIIDTQRGISSQV 123 + GL+A DP T L+ + +LGLKEVFVG+LLG L IPLW +QA G+ ID QRGI+S Sbjct: 63 HVSDGLQAPDPETSLIQIPLLGLKEVFVGVLLGTFLGIPLWGLQAAGEFIDNQRGITSPS 122 Query: 124 AAEDPATHSQASGTGLFLGVTAVTIFVLVGGLQTMVSSLYGSYLIWPVYRFLPAVTAQGA 183 DPAT+SQAS G+FLG+TA+TIFV GG++ ++S+LYGSY IWPVYRF P ++ QGA Sbjct: 123 TQADPATNSQASAMGVFLGITAITIFVAAGGVEAVLSALYGSYSIWPVYRFQPTLSTQGA 182 Query: 184 MECLALLDHIMLTTLLVAGPVLALLLLIDVSVMMLGRFASQLKLNDLSPTIKNVAFGVIM 243 +E LLDHIM TTLLV+GPV+ L LID+S+MML RFA Q K LSP IKN+ F +IM Sbjct: 183 VELFGLLDHIMRTTLLVSGPVVFFLGLIDISMMMLRRFAPQFKSGQLSPPIKNIVFPIIM 242 Query: 244 VSYTVYLLEYAGAEILTSNNVLEHFKKLLK 273 V+Y YLLE EI ++ L KLLK Sbjct: 243 VTYATYLLEGIKLEITQADGTLGWLDKLLK 272