BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0194.0019.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii] 391 e-107 ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110... 331 4e-89 gb|AAL98701.1| Y4yO [Sinorhizobium fredii] 217 7e-55 gb|AAB17687.1| putative [Sinorhizobium fredii] 217 8e-55 ref|NP_106872.1| translocation protein in type III secretion sys... 217 1e-54 >emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii] Length = 345 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/198 (98%), Positives = 196/198 (98%) Query: 1 MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60 MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV Sbjct: 1 MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60 Query: 61 RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120 RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK Sbjct: 61 RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120 Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF 180 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF Sbjct: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF 180 Query: 181 GLVFTEVKLLAGIAGGGL 198 GLVFTEVKLLAGIAGG Sbjct: 181 GLVFTEVKLLAGIAGGAF 198 >ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110] gb|AAG60805.1|AF322012_110 RhcU [Bradyrhizobium japonicum] dbj|BAC47087.1| RhcU protein [Bradyrhizobium japonicum USDA 110] Length = 345 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 177/198 (89%), Positives = 179/198 (90%) Query: 1 MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60 MS TSEEKKLPPTPKKLRDARKKGQSARS+DLVSGVSACAG CLWWRAGAIEDKW ETV Sbjct: 1 MSSTSEEKKLPPTPKKLRDARKKGQSARSSDLVSGVSACAGFGCLWWRAGAIEDKWQETV 60 Query: 61 RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120 RL+DKLQEQPFTSAVPQALSGLLELSIATV PLLAAAV AALLANVLANGGFM A EPLK Sbjct: 61 RLVDKLQEQPFTSAVPQALSGLLELSIATVAPLLAAAVTAALLANVLANGGFMFASEPLK 120 Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF 180 PKLEKLDPIKGL RI SKRSAIELGKTL KVVLLG FF TVTASWKALVYLPVCGMGCF Sbjct: 121 PKLEKLDPIKGLKRIVSKRSAIELGKTLAKVVLLGAIFFLTVTASWKALVYLPVCGMGCF 180 Query: 181 GLVFTEVKLLAGIAGGGL 198 G VFTEVKLL GIA G Sbjct: 181 GFVFTEVKLLIGIAAGAF 198 >gb|AAL98701.1| Y4yO [Sinorhizobium fredii] Length = 345 Score = 217 bits (553), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 111/196 (56%), Positives = 135/196 (68%) Query: 1 MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60 MS TSEEK TPKKL DARK+GQ RS+D V + CAGL+ LW R IEDK E + Sbjct: 1 MSDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYLWLRGSVIEDKCREAL 60 Query: 61 RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120 L DKLQ PF AV QAL L+EL++ATVGPLL+A A +LA +LAN GF+ +LEP+K Sbjct: 61 LLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSLEPMK 120 Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF 180 P EK++P + L R+ S RSA+E+GKTL KV++LG F WK +VYLPVCGMGCF Sbjct: 121 PNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMVYLPVCGMGCF 180 Query: 181 GLVFTEVKLLAGIAGG 196 G+VFT K L GI G Sbjct: 181 GVVFTGAKQLIGIGAG 196 >gb|AAB17687.1| putative [Sinorhizobium fredii] Length = 351 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 111/196 (56%), Positives = 135/196 (68%) Query: 1 MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60 MS TSEEK TPKKL DARK+GQ RS+D V + CAGL+ LW R IEDK E + Sbjct: 1 MSDTSEEKSHGATPKKLSDARKRGQIPRSSDFVRAAATCAGLAYLWLRGSVIEDKCREAL 60 Query: 61 RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120 L DKLQ PF AV QAL L+EL++ATVGPLL+A A +LA +LAN GF+ +LEP+K Sbjct: 61 LLTDKLQNLPFNLAVRQALVLLVELTLATVGPLLSALFGAVILAALLANRGFVFSLEPMK 120 Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF 180 P EK++P + L R+ S RSA+E+GKTL KV++LG F WK +VYLPVCGMGCF Sbjct: 121 PNFEKINPFQWLKRLGSARSAVEVGKTLFKVLVLGGTFSLFFLGLWKTMVYLPVCGMGCF 180 Query: 181 GLVFTEVKLLAGIAGG 196 G+VFT K L GI G Sbjct: 181 GVVFTGAKQLIGIGAG 196 >ref|NP_106872.1| translocation protein in type III secretion system, hrcU [Mesorhizobium loti MAFF303099] dbj|BAB52658.1| translocation protein in type III secretion system; HrcU [Mesorhizobium loti MAFF303099] Length = 345 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/188 (57%), Positives = 129/188 (68%) Query: 1 MSGTSEEKKLPPTPKKLRDARKKGQSARSADLVSGVSACAGLSCLWWRAGAIEDKWHETV 60 MS +SEEK TPKKL DARKKGQ S+D V V CAGL LW R AIEDK E + Sbjct: 1 MSDSSEEKTHAATPKKLNDARKKGQLPHSSDFVRAVGTCAGLGYLWLRGSAIEDKCREAL 60 Query: 61 RLIDKLQEQPFTSAVPQALSGLLELSIATVGPLLAAAVAAALLANVLANGGFMIALEPLK 120 +DKLQ PF AV QAL L EL++ATVGPLL VAA LLA++LANGGF+ +LEP+ Sbjct: 61 LFVDKLQNLPFDFAVRQALVVLAELTLATVGPLLGTLVAAVLLASILANGGFVFSLEPMT 120 Query: 121 PKLEKLDPIKGLTRIASKRSAIELGKTLVKVVLLGTCFFFTVTASWKALVYLPVCGMGCF 180 P +K++P +GL R+AS RS +ELGKTL KV +LG F F + WK +VYLP CGMGC Sbjct: 121 PNFDKINPFQGLKRLASARSMVELGKTLFKVFVLGATFSFCLLGMWKTMVYLPFCGMGCL 180 Query: 181 GLVFTEVK 188 GLV T K Sbjct: 181 GLVVTGAK 188