BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0018.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii]                 289   8e-77
ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110...   250   5e-65
ref|NP_106872.1| translocation protein in type III secretion sys...   194   3e-48
gb|AAB17687.1| putative [Sinorhizobium fredii]                        175   2e-42
gb|AAL98701.1| Y4yO [Sinorhizobium fredii]                            170   7e-41

>emb|CAQ57541.1| RhcU protein [Bradyrhizobium elkanii]
          Length = 345

 Score =  289 bits (740), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   LTDLLIQRWLFLQEMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGVHRANLI 60
           LTDLLIQRWLFLQEMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGVHRANLI
Sbjct: 203 LTDLLIQRWLFLQEMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGVHRANLI 262

Query: 61  LTGSTTLVGLRYVRGETGVPILVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAK 120
           LTGSTTLVGLRYVRGETGVPILVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAK
Sbjct: 263 LTGSTTLVGLRYVRGETGVPILVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAK 322

Query: 121 LGNPVPSQYFEAVAKALYAGGLV 143
           LGNPVPSQYFEAVAKALYAGGLV
Sbjct: 323 LGNPVPSQYFEAVAKALYAGGLV 345


>ref|NP_768462.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
 gb|AAG60805.1|AF322012_110 RhcU [Bradyrhizobium japonicum]
 dbj|BAC47087.1| RhcU protein [Bradyrhizobium japonicum USDA 110]
          Length = 345

 Score =  250 bits (639), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/143 (83%), Positives = 131/143 (91%)

Query: 1   LTDLLIQRWLFLQEMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGVHRANLI 60
           L DLLIQRWLF+Q+MRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLG+ RA LI
Sbjct: 203 LADLLIQRWLFMQDMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGISRATLI 262

Query: 61  LTGSTTLVGLRYVRGETGVPILVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAK 120
           L G  TL+GLRYVRGETGVP+LVCRGE E AS+LLGEARAL L +V+D+VLARQLLG A+
Sbjct: 263 LRGPATLIGLRYVRGETGVPVLVCRGEGEAASQLLGEARALRLNIVEDNVLARQLLGKAR 322

Query: 121 LGNPVPSQYFEAVAKALYAGGLV 143
           LGNPVPSQYFE+VAKALYA GLV
Sbjct: 323 LGNPVPSQYFESVAKALYAAGLV 345


>ref|NP_106872.1| translocation protein in type III secretion system, hrcU
           [Mesorhizobium loti MAFF303099]
 dbj|BAB52658.1| translocation protein in type III secretion system; HrcU
           [Mesorhizobium loti MAFF303099]
          Length = 345

 Score =  194 bits (494), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 112/140 (80%)

Query: 3   DLLIQRWLFLQEMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGVHRANLILT 62
           DLL+QR LFL+EMRMT+TE  RE K+QQG P++K E RR+R ESA+E PLGVH A LI  
Sbjct: 205 DLLVQRALFLREMRMTKTEVTRELKDQQGAPELKSERRRIRDESADEPPLGVHHATLIFK 264

Query: 63  GSTTLVGLRYVRGETGVPILVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAKLG 122
           G+  L+GLRYVRGETGVP+LVCR + E AS LL EARAL L++VD+DVLA QL+G  +LG
Sbjct: 265 GTAILIGLRYVRGETGVPVLVCRADGERASHLLSEARALRLEIVDNDVLAHQLIGKTQLG 324

Query: 123 NPVPSQYFEAVAKALYAGGL 142
            P+P QYFE VA+AL+A GL
Sbjct: 325 RPIPMQYFEPVARALFAAGL 344


>gb|AAB17687.1| putative [Sinorhizobium fredii]
          Length = 351

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 101/131 (77%)

Query: 7   QRWLFLQEMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGVHRANLILTGSTT 66
           QR LFL+EMRMT+TE KRE KEQQG P++K E RR+R E A+E PLGVHRA L+  G+  
Sbjct: 209 QRALFLREMRMTKTEIKRELKEQQGTPELKGERRRIRNEMASEPPLGVHRATLVYRGTAV 268

Query: 67  LVGLRYVRGETGVPILVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAKLGNPVP 126
           L+GLRYVRGETGVPILVCR E E AS +  EA+ L LK+VDD VLA QL+ T KLG  +P
Sbjct: 269 LIGLRYVRGETGVPILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIP 328

Query: 127 SQYFEAVAKAL 137
            QYFE +A+AL
Sbjct: 329 MQYFEPIARAL 339


>gb|AAL98701.1| Y4yO [Sinorhizobium fredii]
          Length = 345

 Score =  170 bits (430), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/127 (64%), Positives = 97/127 (76%)

Query: 7   QRWLFLQEMRMTETEAKRENKEQQGNPQVKREHRRLRQESANEAPLGVHRANLILTGSTT 66
           QR LFL+EMRMT+TE KRE KEQQG P++K E RR+R E A+E PLGVHRA L+  G+  
Sbjct: 209 QRALFLREMRMTKTEIKRELKEQQGTPELKGERRRIRNEMASEPPLGVHRATLVYRGTAV 268

Query: 67  LVGLRYVRGETGVPILVCRGESETASKLLGEARALGLKVVDDDVLARQLLGTAKLGNPVP 126
           L+GLRYVRGETGVPILVCR E E AS +  EA+ L LK+VDD VLA QL+ T KLG  +P
Sbjct: 269 LIGLRYVRGETGVPILVCRAEGEAASDMFREAQNLRLKIVDDHVLAHQLMSTTKLGTAIP 328

Query: 127 SQYFEAV 133
            QYFE +
Sbjct: 329 MQYFEPI 335