BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0194.0017.p (484 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii] 967 0.0 gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum] 804 0.0 ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 11... 734 0.0 ref|NP_444146.1| outer membrane protein RhcC2; component of type... 599 e-169 ref|NP_106858.1| type II secretion system protein [Mesorhizobium... 576 e-162 >emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii] Length = 484 Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/484 (99%), Positives = 484/484 (100%) Query: 1 LKVIYNAAGTDEPSMVASASRSAGLSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAP 60 +KVIYNAAGTDEPSMVASASRSAGLSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAP Sbjct: 1 MKVIYNAAGTDEPSMVASASRSAGLSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAP 60 Query: 61 GGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALN 120 GGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALN Sbjct: 61 GGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALN 120 Query: 121 ENGEALAELRVVVTQPIEDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKV 180 ENGEALAELRVVVTQPIEDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKV Sbjct: 121 ENGEALAELRVVVTQPIEDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKV 180 Query: 181 TEQFLGAGSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTASSPNGAFLISGKDG 240 TEQFLGAGSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTASSPNGAFLISGKDG Sbjct: 181 TEQFLGAGSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTASSPNGAFLISGKDG 240 Query: 241 GSGAAGGGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFP 300 GSGAAGGGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFP Sbjct: 241 GSGAAGGGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFP 300 Query: 301 IPVMQDNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPAL 360 IPVMQDNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPAL Sbjct: 301 IPVMQDNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPAL 360 Query: 361 STRRASTVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELV 420 STRRASTVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELV Sbjct: 361 STRRASTVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELV 420 Query: 421 IIVTPYIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAG 480 IIVTPYIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAG Sbjct: 421 IIVTPYIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAG 480 Query: 481 FIIE 484 FIIE Sbjct: 481 FIIE 484 >gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum] Length = 484 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/484 (85%), Positives = 450/484 (92%) Query: 1 LKVIYNAAGTDEPSMVASASRSAGLSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAP 60 +KV+ NAAG +P + + RSA L+RLCY+LCGFA+LF AA+AE KRDGKGE PRAAP Sbjct: 1 MKVLNNAAGATQPPAITNPQRSAALNRLCYLLCGFALLFPLAASAETKRDGKGEMPRAAP 60 Query: 61 GGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALN 120 G T+GTLN+TSSQGKTVHL+A A +IFVADP IADYQAPS++TIFVFGKKSGRTSLFALN Sbjct: 61 GSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALN 120 Query: 121 ENGEALAELRVVVTQPIEDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKV 180 ENGEALAELR+VVTQP+EDLRA L+AEVGDYPI VSYTPRGAILSG APNA+VVE A+KV Sbjct: 121 ENGEALAELRIVVTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKV 180 Query: 181 TEQFLGAGSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTASSPNGAFLISGKDG 240 TEQF+GAG+ VVNKIQVAGSLQVNLSVRVAEVSR+AVKDLNI+FTAS PNGAFL +GK G Sbjct: 181 TEQFVGAGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPNGAFLATGKPG 240 Query: 241 GSGAAGGGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFP 300 GSG AGGGGTIGIGFS GN NLSAVLDALASEHLASILAEPNLTAMSGE+ASFLAGGEFP Sbjct: 241 GSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAGGEFP 300 Query: 301 IPVMQDNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPAL 360 IPVMQDNRQVSVQFRQFGVSLEFVPTVL+NNQI VRVKPEVSELS+EG+VKINGM VPAL Sbjct: 301 IPVMQDNRQVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGMAVPAL 360 Query: 361 STRRASTVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELV 420 STRRASTVVELASGQSFAIGGLIRRNFN DIGEFPWLGDVPILGALFRSSSFQKRETELV Sbjct: 361 STRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKRETELV 420 Query: 421 IIVTPYIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAG 480 I+VTPYIVRPGSNPS++S P++RIAPPSDAGRILTNT+ARPP+ RDAPR SAPGLTG+AG Sbjct: 421 IVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGLTGNAG 480 Query: 481 FIIE 484 FIIE Sbjct: 481 FIIE 484 >ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110] Length = 430 Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/429 (88%), Positives = 408/429 (95%) Query: 56 PRAAPGGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTS 115 PRAAPG T+GTLN+TSSQGKTVHL+A A +IFVADP IADYQAPS++TIFVFGKKSGRTS Sbjct: 2 PRAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQAPSSSTIFVFGKKSGRTS 61 Query: 116 LFALNENGEALAELRVVVTQPIEDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVE 175 LFALNENGEALAELR+VVTQP+EDLRA L+AEVGDYPI VSYTPRGAILSG APNA+VVE Sbjct: 62 LFALNENGEALAELRIVVTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVE 121 Query: 176 TAKKVTEQFLGAGSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTASSPNGAFLI 235 A+KVTEQF+GAG+ VVNKIQVAGSLQVNLSVRVAEVSR+AVKDLNI+FTAS PNGAFL Sbjct: 122 AARKVTEQFVGAGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPNGAFLA 181 Query: 236 SGKDGGSGAAGGGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLA 295 +GK GGSG AGGGGTIGIGFS GN NLSAVLDALASEHLASILAEPNLTAMSGE+ASFLA Sbjct: 182 TGKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLA 241 Query: 296 GGEFPIPVMQDNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGM 355 GGEFPIPVMQDNRQVSVQFRQFGVSLEFVPTVL+NNQI VRVKPEVSELS+EG+VKINGM Sbjct: 242 GGEFPIPVMQDNRQVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGM 301 Query: 356 EVPALSTRRASTVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKR 415 VPALSTRRASTVVELASGQSFAIGGLIRRNFN DIGEFPWLGDVPILGALFRSSSFQKR Sbjct: 302 AVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKR 361 Query: 416 ETELVIIVTPYIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGL 475 ETELVI+VTPYIVRPGSNPS++S P++RIAPPSDAGRILTNT+ARPP+ RDAPR SAPGL Sbjct: 362 ETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGL 421 Query: 476 TGSAGFIIE 484 TG+AGFIIE Sbjct: 422 TGNAGFIIE 430 >ref|NP_444146.1| outer membrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] sp|P55702.1|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion apparatus [Sinorhizobium fredii NGR234] Length = 423 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 309/432 (71%), Positives = 350/432 (81%), Gaps = 13/432 (3%) Query: 56 PRAAPGGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTS 115 PRAAP + TLNL+SS GKTVHL A A +IFVADPTIADYQAPSN TIFVFGKK GRTS Sbjct: 2 PRAAPNSINATLNLSSSLGKTVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFGRTS 61 Query: 116 LFALNENGEALAELRVVVTQPIEDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVE 175 LFAL+ENGEALAEL VVVTQPI DLRA LR +VGDYPIHVSYTPRGAILSGTAPNAEVV+ Sbjct: 62 LFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAEVVD 121 Query: 176 TAKKVTEQFLGAGSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTASSPNGAFLI 235 AK+VTEQFLG G+ +VN I+VAGSLQVNLSVRVAEVSRS +K L I+ +A G F + Sbjct: 122 IAKRVTEQFLGDGAPIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGINLSAFGQFGNFKV 181 Query: 236 SGKDGGSG---AAGGGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESAS 292 + G+G A G GGT IGF ++ AVLDALA EH+AS+LAEPNLTAMSGE+AS Sbjct: 182 GVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLAEPNLTAMSGETAS 241 Query: 293 FLAGGEFPIPVMQDNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKI 352 FLAGGEFPIPV+Q+N Q SV+FR+FGVSLEFVPTVL+NN IN+ VKPEVSELS +G V++ Sbjct: 242 FLAGGEFPIPVLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVKPEVSELSLQGAVQV 301 Query: 353 NGMEVPALSTRRASTVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSF 412 NG+ VPA+STRRA TVVELASGQSF IGGLIRRN NNDI FPWLG +PILGALFRSSSF Sbjct: 302 NGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLGRIPILGALFRSSSF 361 Query: 413 QKRETELVIIVTPYIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSA 472 QK E+ELVI+VTPYIVRPGSNP++MSAP+DR+AP L PP+ R A T A Sbjct: 362 QKEESELVILVTPYIVRPGSNPNQMSAPTDRMAP----------ALGTPPRARAAISTDA 411 Query: 473 PGLTGSAGFIIE 484 P + G GFIIE Sbjct: 412 PSVKGDLGFIIE 423 >ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099] dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099] Length = 432 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 301/432 (69%), Positives = 350/432 (81%), Gaps = 9/432 (2%) Query: 56 PRAAPGGTSGTLNLTSSQGKTVHLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTS 115 PRAA GTLNL+SS GKTVHL A AT+IFVADPTIADYQA SNTTIFVFGKKSGRTS Sbjct: 7 PRAASNSIDGTLNLSSSLGKTVHLPAPATTIFVADPTIADYQAASNTTIFVFGKKSGRTS 66 Query: 116 LFALNENGEALAELRVVVTQPIEDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVE 175 LFAL++ GEALA LR+VVTQPIE+LRA L +VGD I VSYTPRGAILSGTAPNAEV + Sbjct: 67 LFALDDKGEALAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGTAPNAEVAD 126 Query: 176 TAKKVTEQFLGAGSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTASSPNGAFLI 235 TAK+VTEQ+LG G+ VVN I+VAGSLQVNLSVRVAEVSRSA+K L ++ +A F + Sbjct: 127 TAKRVTEQYLGDGAQVVNNIKVAGSLQVNLSVRVAEVSRSAMKALGVNLSAFGQIDNFRV 186 Query: 236 SGKDGGSGAAGGGGTIGIG---FSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESAS 292 GG +G G F+ G N+ AVLDALA EH+AS+LAEPNLTAMSGE+AS Sbjct: 187 GLLSGGGTGSGAAQGGGTAGIGFNNGAVNIGAVLDALAKEHIASVLAEPNLTAMSGETAS 246 Query: 293 FLAGGEFPIPVMQDNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKI 352 FLAGGEFPIPV+Q+N+QVSV+FR FGVSLEFVPTVLNNN+IN+ VKPEVSELSS+G V+I Sbjct: 247 FLAGGEFPIPVLQENKQVSVEFRHFGVSLEFVPTVLNNNRINIHVKPEVSELSSQGAVQI 306 Query: 353 NGMEVPALSTRRASTVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSF 412 NG+ VPA+STRRA TVVELASGQSFAIGGLIRRN NN++ FPWLG++PILGALFRSSSF Sbjct: 307 NGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSAFPWLGEMPILGALFRSSSF 366 Query: 413 QKRETELVIIVTPYIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSA 472 QK E+EL+I+VTPYIV+PGS+P++MSAP+DR+AP D + A PP+ R A RT A Sbjct: 367 QKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALD------DPPADPPRGRAAARTGA 420 Query: 473 PGLTGSAGFIIE 484 PG GFII+ Sbjct: 421 PGAKRGRGFIIQ 432