BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0016.p         (229 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAQ57538.1| two-component response regulator [Bradyrhizobium...   462   e-128
ref|NP_768483.1| two-component response regulator [Bradyrhizobiu...   417   e-115
ref|NP_106857.1| two-component response regulator [Mesorhizobium...   330   1e-88
ref|NP_444145.1| transcription regulator [Sinorhizobium fredii N...   323   9e-87
gb|AAL98682.1| Y4xI [Sinorhizobium fredii] >gi|27965728|gb|AAO25...   322   3e-86

>emb|CAQ57538.1| two-component response regulator [Bradyrhizobium elkanii]
 gb|ADI58611.1| TtsI [Bradyrhizobium elkanii]
          Length = 229

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60
           MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL
Sbjct: 1   MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60

Query: 61  DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120
           DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST
Sbjct: 61  DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120

Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180
           QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA
Sbjct: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180

Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLELIEAASAA 229
           FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLELIEAASAA
Sbjct: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLELIEAASAA 229


>ref|NP_768483.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gb|AAG60827.1|AF322012_132 ID284 [Bradyrhizobium japonicum]
 dbj|BAC47108.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 229

 Score =  417 bits (1072), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/229 (89%), Positives = 215/229 (93%)

Query: 1   MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60
           MRILLVDHHADF RAVK  L  CGFAVDVT TLDEA+AALDCANYH++LLE VLPDGD L
Sbjct: 1   MRILLVDHHADFGRAVKATLVNCGFAVDVTPTLDEASAALDCANYHLVLLESVLPDGDSL 60

Query: 61  DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120
           DWLKQLRREGRSMPA+MMSSLNDL RRIA FNAGADDFLPKPVS +ELIARMRAILRRST
Sbjct: 61  DWLKQLRREGRSMPAMMMSSLNDLSRRIATFNAGADDFLPKPVSIDELIARMRAILRRST 120

Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180
           QMTAP+VTFGNLHFDPIARQV+VGGRIL+IARREVCILEHLLNRAGRTVPRASLEDSLYA
Sbjct: 121 QMTAPVVTFGNLHFDPIARQVSVGGRILRIARREVCILEHLLNRAGRTVPRASLEDSLYA 180

Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLELIEAASAA 229
           FDDEVSTNALEVGIYRLR HL+Q+GATLRIKTARGVGYTLEL+  ASAA
Sbjct: 181 FDDEVSTNALEVGIYRLRAHLNQAGATLRIKTARGVGYTLELVGTASAA 229


>ref|NP_106857.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 dbj|BAB52643.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 223

 Score =  330 bits (845), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 160/221 (72%), Positives = 183/221 (82%)

Query: 1   MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60
           MR L VDHHAD  RAV  AL   GFAVDV  TL++A++A  CA+Y ILLLELVLPDGDGL
Sbjct: 1   MRTLFVDHHADLTRAVGVALGDSGFAVDVVPTLEQASSAFSCASYEILLLELVLPDGDGL 60

Query: 61  DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120
           DWLKQLR EG S+PA+++S ++DL +RIAIFN GADDFL KPV T ELIARMRA+LRRST
Sbjct: 61  DWLKQLRGEGHSVPALILSDVDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRRST 120

Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180
           QMTAP++ FGNLHFDPI RQV+V G  L +ARRE+CILEHLLNRAGR VPR+ LED LY+
Sbjct: 121 QMTAPIIVFGNLHFDPIGRQVSVAGYPLTVARRELCILEHLLNRAGRIVPRSQLEDHLYS 180

Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLE 221
           F+DEVS NALEVGIYRLR +LS S AT RIKT RG+GY LE
Sbjct: 181 FNDEVSANALEVGIYRLRRYLSSSNATPRIKTVRGIGYILE 221


>ref|NP_444145.1| transcription regulator [Sinorhizobium fredii NGR234]
 sp|P55701.1|Y4XI_RHISN RecName: Full=Probable transcriptional regulatory protein y4xI
 gb|AAB91932.1| transcription regulator of late flavonoid-inducible functions TtsI
           [Sinorhizobium fredii NGR234]
          Length = 226

 Score =  323 bits (829), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 161/228 (70%), Positives = 192/228 (84%), Gaps = 2/228 (0%)

Query: 1   MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60
           MR LLVD   D  RAV+ AL   GFAVDV  TL++A++A   A+Y ILLLELVLPDGDGL
Sbjct: 1   MRTLLVD--TDLTRAVRGALGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDGL 58

Query: 61  DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120
           DWL+QLR +G S+PA++MS L+DL +RI++FN+GADDFL KPVST+ELIARMRA+LRRST
Sbjct: 59  DWLRQLRSDGYSVPAVIMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRST 118

Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180
           Q+T P++ FGNLHFDPI RQV+V G  L IARRE+CILEHLLNRAGR VPRA LED LY+
Sbjct: 119 QITCPIIEFGNLHFDPIGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLYS 178

Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLELIEAASA 228
           F+DEVS NALE GIYRLR +LS+SGATLRI+T RG+GYTLEL +A+SA
Sbjct: 179 FNDEVSGNALEAGIYRLRGYLSRSGATLRIRTVRGIGYTLELTDASSA 226


>gb|AAL98682.1| Y4xI [Sinorhizobium fredii]
 gb|AAO25539.1| Y4xi [Sinorhizobium fredii]
          Length = 226

 Score =  322 bits (824), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 191/228 (83%), Gaps = 2/228 (0%)

Query: 1   MRILLVDHHADFARAVKEALPYCGFAVDVTRTLDEAAAALDCANYHILLLELVLPDGDGL 60
           MR LLVD   D  RAV+ AL   GFAVDV  TL++A++A   A+Y ILLLELVLPDGDGL
Sbjct: 1   MRTLLVD--TDLTRAVRGALGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDGL 58

Query: 61  DWLKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRRST 120
           DWL+QLR +G S+PA++MS L+DL +RI++FN+GADDFL KPVST+ELIARMRA+LRRST
Sbjct: 59  DWLRQLRSDGYSVPAVIMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRST 118

Query: 121 QMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDSLYA 180
           Q+T P++ FGNLHFDPI RQV+V G  L IARRE+CILEHLLNRAGR VPRA LED LY+
Sbjct: 119 QITCPIIEFGNLHFDPIGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLYS 178

Query: 181 FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLELIEAASA 228
           F+DEVS NALE GIYRLR +LS+SGATLRI+T RG+GY LEL +A+SA
Sbjct: 179 FNDEVSGNALEAGIYRLRGYLSRSGATLRIRTVRGIGYVLELTDASSA 226