BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0194.0014.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768487.1| VirK protein [Bradyrhizobium japonicum USDA 110...   238   2e-61
ref|YP_003745043.1| hypothetical protein RCFBP_11117 [Ralstonia ...    76   2e-12
gb|AEG68454.1| VirK protein [Ralstonia solanacearum Po82]              75   4e-12
emb|CBJ37299.1| conserved exported protein of unknown function, ...    74   5e-12
ref|NP_520406.1| signal peptide protein [Ralstonia solanacearum ...    74   9e-12

>ref|NP_768487.1| VirK protein [Bradyrhizobium japonicum USDA 110]
 gb|AAG60830.1|AF322012_135 ID299 [Bradyrhizobium japonicum]
 dbj|BAC47112.1| blr1847 [Bradyrhizobium japonicum USDA 110]
          Length = 144

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/146 (85%), Positives = 134/146 (91%), Gaps = 2/146 (1%)

Query: 1   MKCTGKGLTILLSLLSAASMSTMARADEPSPKYTEVLNALQTGKNVKLILDMSRCANAEG 60
           MK TG+GLTILLSLLSAAS    ARAD+PSPKYTEVL ALQ GKNVKLILDM+ C NA+G
Sbjct: 1   MKVTGRGLTILLSLLSAASAP--ARADDPSPKYTEVLRALQAGKNVKLILDMTHCTNADG 58

Query: 61  SKPASATQAGLVINAFRVTPQNGISFANAHQTVDSAGHAVTEYIRHSLSREGKLTVRASK 120
            KPASATQAGLVINAFRVT Q+GISFANAHQTVDS+GHAVTEYIRHSLSREGKLTVRASK
Sbjct: 59  GKPASATQAGLVINAFRVTSQSGISFANAHQTVDSSGHAVTEYIRHSLSREGKLTVRASK 118

Query: 121 LVVGTTELVHQGEFICDLPDGAKFIW 146
           LVVGTTEL +QGEFIC++PDGAKFIW
Sbjct: 119 LVVGTTELANQGEFICEVPDGAKFIW 144


>ref|YP_003745043.1| hypothetical protein RCFBP_11117 [Ralstonia solanacearum CFBP2957]
 emb|CBJ42416.1| conserved exported protein of unknown function, virk domain
           [Ralstonia solanacearum CFBP2957]
          Length = 151

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 58/117 (49%)

Query: 29  PSPKYTEVLNALQTGKNVKLILDMSRCANAEGSKPASATQAGLVINAFRVTPQNGISFAN 88
           P P      +AL  GK V   +D+SRC     + PA  T+ G+ +N +R+ P N +SF++
Sbjct: 32  PLPDVLAAEHALSLGKPVTATIDLSRCTGDTATTPAGTTRGGVTVNPYRIQPDNTLSFSD 91

Query: 89  AHQTVDSAGHAVTEYIRHSLSREGKLTVRASKLVVGTTELVHQGEFICDLPDGAKFI 145
            H TV S G  +T+++R+++   G     +    + T  L     + C L DG K  
Sbjct: 92  THFTVRSDGTPITQFLRYTIDATGTARFASYIFAMPTYTLQSHVSYTCKLGDGVKLF 148


>gb|AEG68454.1| VirK protein [Ralstonia solanacearum Po82]
          Length = 151

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 13  SLLSAASMSTMARADE-PSPKYTEVLNALQTGKNVKLILDMSRCANAEGSKPASATQAGL 71
           +L S A++  +A A   P P      +AL  GK V   +D+SRC     + PA  T+ G+
Sbjct: 15  TLASLAALPVLAHAQTIPLPDVLAAEHALSLGKPVTATIDLSRCTGDTATTPAGTTRGGV 74

Query: 72  VINAFRVTPQNGISFANAHQTVDSAGHAVTEYIRHSLSREGKLTVRASKLVVGTTELVHQ 131
            +N +R+ P N +SF++ H TV S G  +T+++R+++   G     +    +    L   
Sbjct: 75  TVNPYRIQPDNTLSFSDTHFTVRSDGTPITQFLRYTIDATGTARFASYIFAMPAYTLQSH 134

Query: 132 GEFICDLPDGAKFI 145
             + C L +G K  
Sbjct: 135 VSYTCKLGEGVKLF 148


>emb|CBJ37299.1| conserved exported protein of unknown function, virk domain
           [Ralstonia solanacearum CMR15]
          Length = 128

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 38  NALQTGKNVKLILDMSRCANAEGSKPASATQAGLVINAFRVTPQNGISFANAHQTVDSAG 97
           +AL  GK V   +D++RC     + PA  T+ G+ +N +R+ P N +SF++ H TV S G
Sbjct: 18  HALSLGKPVTATIDLTRCTGDTATTPAGTTRGGVTVNPYRIQPNNTLSFSDTHFTVRSDG 77

Query: 98  HAVTEYIRHSLSREGKLTVRASKLVVGTTELVHQGE--FICDLPDGAKFI 145
             +T+++R+S+   G  TVR S  +        Q +  + C L +G K  
Sbjct: 78  TPITQFLRYSIDTSG--TVRFSSYIFAMPAYTLQSQVAYTCKLGEGVKLF 125


>ref|NP_520406.1| signal peptide protein [Ralstonia solanacearum GMI1000]
 emb|CAD15992.1| putative signal peptide protein [Ralstonia solanacearum GMI1000]
          Length = 143

 Score = 73.6 bits (179), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%)

Query: 38  NALQTGKNVKLILDMSRCANAEGSKPASATQAGLVINAFRVTPQNGISFANAHQTVDSAG 97
           +AL  GK V   +D++RC     + PA  T+ G+ +N +R+ P N +SF++ H TV S G
Sbjct: 33  HALSLGKPVTATIDLTRCTGDTATTPAGTTRGGVTVNPYRIQPDNTLSFSDTHFTVRSDG 92

Query: 98  HAVTEYIRHSLSREGKLTVRASKLVVGTTELVHQGEFICDLPDGAKFI 145
             +T+++R+S+   G     +    +    L  Q  + C L +G K  
Sbjct: 93  TPITQFLRYSIDTSGTARFSSYIFAMPAYTLQSQVSYTCKLGEGVKLF 140