BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0097.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628921.1| high-affinity branched-chain amino acid trans... 468 e-130 ref|ZP_01881282.1| inner-membrane translocator [Roseovarius sp. ... 348 4e-94 ref|YP_485699.1| inner-membrane translocator [Rhodopseudomonas p... 348 4e-94 ref|ZP_08407424.1| inner-membrane translocator [Hylemonella grac... 335 4e-90 ref|ZP_06684921.1| branched-chain amino acid ABC superfamily ATP... 330 1e-88 >ref|ZP_08628921.1| high-affinity branched-chain amino acid transport system permease protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08280.1| high-affinity branched-chain amino acid transport system permease protein [Bradyrhizobiaceae bacterium SG-6C] Length = 291 Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust. Identities = 249/276 (90%), Positives = 261/276 (94%) Query: 1 MYGLLALGFHVTYAVSGTVNFSQGSSMTLGAVAGYFFLVLWGWPAAAGIPAVLLVCALYG 60 MYGLLALGFHVTYAVSGTVNFSQGSSMTLGAVAGYF LVLWGWPAA GIP VLL+ ALYG Sbjct: 16 MYGLLALGFHVTYAVSGTVNFSQGSSMTLGAVAGYFVLVLWGWPAALGIPVVLLIGALYG 75 Query: 61 LLIERFAVRPFVQRGSDNWLMATVAVGIIVDNVMMFVFGKEPRSFPSVLAAKPIQIVEGA 120 L IER+AVRPFVQRGSDNWLMATVAVGIIVDN+M+FVFGKEPR FPS LA KPIQIV+GA Sbjct: 76 LAIERYAVRPFVQRGSDNWLMATVAVGIIVDNLMLFVFGKEPRGFPSPLAVKPIQIVDGA 135 Query: 121 GVYPLQLLIPVVGLLLALALHLLSRRTRHGVAMLAVVQNPNAARLMGINVSGAIAASYAV 180 GVYPLQLLIPV+GLLLA ALHL +RRTRHGVAMLAVVQNP AA+LMGI+V AIA SYAV Sbjct: 136 GVYPLQLLIPVIGLLLAGALHLFTRRTRHGVAMLAVVQNPGAAKLMGIDVGRAIAGSYAV 195 Query: 181 SAMLAGVAALLIAPLFNVSSEMGTLFGIKAFAAAIIGGLGSAWGVMLAGLCLGLIEVFAT 240 SA+LAG+AALLIAPLFNVSSEMGTLFGIKAFAAAIIGGLGSAWGVMLAGLCLGLIEVFAT Sbjct: 196 SAILAGIAALLIAPLFNVSSEMGTLFGIKAFAAAIIGGLGSAWGVMLAGLCLGLIEVFAT 255 Query: 241 NYLGSVYTQIITFASVIAILVVLPHGLLGRAGVKKV 276 +YLGSVYTQIITFASVI ILVVLPHGLLGRAGVKKV Sbjct: 256 SYLGSVYTQIITFASVIVILVVLPHGLLGRAGVKKV 291 >ref|ZP_01881282.1| inner-membrane translocator [Roseovarius sp. TM1035] gb|EDM30247.1| inner-membrane translocator [Roseovarius sp. TM1035] Length = 289 Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 177/276 (64%), Positives = 213/276 (77%), Gaps = 1/276 (0%) Query: 1 MYGLLALGFHVTYAVSGTVNFSQGSSMTLGAVAGYFFLVLWGWPAAAGIPAVLLVCALYG 60 MYGL+ALGFH+TYAVS TVNFSQGSSM GAV GY F+V GWP GIPA L CA+ G Sbjct: 15 MYGLMALGFHITYAVSKTVNFSQGSSMMFGAVMGYTFMVTLGWPFWIGIPAALACCAILG 74 Query: 61 LLIERFAVRPFVQRGSDNWLMATVAVGIIVDNVMMFVFGKEPRSFPSVLAAKPIQIVEGA 120 L +ERF VRPF RGSD WLMATVA GI++DN+++F FGKEPRS PS I I GA Sbjct: 75 LAVERFLVRPFAARGSDAWLMATVAGGIVLDNIILFTFGKEPRSLPSPFVENAIDIF-GA 133 Query: 121 GVYPLQLLIPVVGLLLALALHLLSRRTRHGVAMLAVVQNPNAARLMGINVSGAIAASYAV 180 G YPLQL+IPVVGL +A+AL +++ +TR G AMLA VQ P AARL G+N IAAS+A+ Sbjct: 134 GAYPLQLIIPVVGLAIAMALTIVTTKTRLGKAMLASVQRPEAARLTGVNTQAVIAASFAI 193 Query: 181 SAMLAGVAALLIAPLFNVSSEMGTLFGIKAFAAAIIGGLGSAWGVMLAGLCLGLIEVFAT 240 SA+ AGVA LLIAPLFNVS+ MG +FGIKAFAAAI+GG+ SAWGVM+AG+ G +E T Sbjct: 194 SAVFAGVAGLLIAPLFNVSAGMGVVFGIKAFAAAILGGISSAWGVMIAGVLYGCVEALTT 253 Query: 241 NYLGSVYTQIITFASVIAILVVLPHGLLGRAGVKKV 276 Y+GS YTQI++F+ VI +LV +P+GL GRA +KKV Sbjct: 254 AYIGSSYTQIVSFSVVILVLVTVPNGLFGRAELKKV 289 >ref|YP_485699.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] gb|ABD06788.1| inner-membrane translocator [Rhodopseudomonas palustris HaA2] Length = 289 Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 182/276 (65%), Positives = 218/276 (78%), Gaps = 1/276 (0%) Query: 1 MYGLLALGFHVTYAVSGTVNFSQGSSMTLGAVAGYFFLVLWGWPAAAGIPAVLLVCALYG 60 MYGL+ALGFH+TY VS TVNF+QGS+M LGAV GY F V +GWP I A L VCAL+G Sbjct: 15 MYGLIALGFHITYVVSNTVNFAQGSAMMLGAVLGYTFGVRYGWPMPLAIVAALGVCALFG 74 Query: 61 LLIERFAVRPFVQRGSDNWLMATVAVGIIVDNVMMFVFGKEPRSFPSVLAAKPIQIVEGA 120 L++ER VRPFV RGS+ WLMATVA GI++DN +MF FGKEPR FPS A++PI++ GA Sbjct: 75 LVVERILVRPFVVRGSNAWLMATVAAGIVLDNAVMFTFGKEPRGFPSDWASQPIRLF-GA 133 Query: 121 GVYPLQLLIPVVGLLLALALHLLSRRTRHGVAMLAVVQNPNAARLMGINVSGAIAASYAV 180 GVYPLQL+IP+VG+ A +HLL R TR G A+LAVVQNP+AARLMGINV IA S+ V Sbjct: 134 GVYPLQLVIPLVGIGAAAVMHLLLRHTRRGKALLAVVQNPDAARLMGINVHRTIAISFMV 193 Query: 181 SAMLAGVAALLIAPLFNVSSEMGTLFGIKAFAAAIIGGLGSAWGVMLAGLCLGLIEVFAT 240 S LAG+A LLIAPLF+VSSEMGTLFGIKAFA AI+GG+GSAWGV++AGL GLIE T Sbjct: 194 STALAGLAGLLIAPLFSVSSEMGTLFGIKAFAVAILGGMGSAWGVVIAGLAYGLIEALVT 253 Query: 241 NYLGSVYTQIITFASVIAILVVLPHGLLGRAGVKKV 276 ++LGSVYTQI+ F+ VI L + P+GL G A + KV Sbjct: 254 SFLGSVYTQIVVFSVVILALALRPNGLFGHAAINKV 289 >ref|ZP_08407424.1| inner-membrane translocator [Hylemonella gracilis ATCC 19624] gb|EGI75453.1| inner-membrane translocator [Hylemonella gracilis ATCC 19624] Length = 292 Score = 335 bits (859), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 185/277 (66%), Positives = 217/277 (78%), Gaps = 1/277 (0%) Query: 1 MYGLLALGFHVTYAVSGTVNFSQGSSMTLGAVAGYFFLVLWGWPAAAGIPAVLLVCALYG 60 MYGL+ALGF+VTYAVSGTVNF+QGSSM LGAV Y F GWP A + L +CA+YG Sbjct: 16 MYGLMALGFYVTYAVSGTVNFAQGSSMMLGAVLTYTFAQTLGWPGYAAVLLALALCAVYG 75 Query: 61 LLIERFAVRPFVQRGSDNWLMATVAVGIIVDNVMMFVFGKEPRSFPSVLAAKPIQIVE-G 119 LL+E AVRPFV RGSD WLMATVA+GI++DNV+M +GKEPRS PS LA PI++ G Sbjct: 76 LLVELLAVRPFVNRGSDAWLMATVALGIVLDNVVMATYGKEPRSLPSPLAQSPIEVGGLG 135 Query: 120 AGVYPLQLLIPVVGLLLALALHLLSRRTRHGVAMLAVVQNPNAARLMGINVSGAIAASYA 179 GVYPLQLLIP+VGL LA ALHL+SRRTR G AMLAVVQN AARLMGI + A+A ++A Sbjct: 136 LGVYPLQLLIPLVGLTLAAALHLVSRRTRWGTAMLAVVQNRAAARLMGIPIRRAVALAFA 195 Query: 180 VSAMLAGVAALLIAPLFNVSSEMGTLFGIKAFAAAIIGGLGSAWGVMLAGLCLGLIEVFA 239 +SA+ AG+A +LIAPL NV S+MGTLFG+KAFA AI+GG+ SAWGVM+AGL GL+E Sbjct: 196 LSALFAGIAGVLIAPLMNVHSDMGTLFGLKAFAVAILGGITSAWGVMIAGLIFGLVEATI 255 Query: 240 TNYLGSVYTQIITFASVIAILVVLPHGLLGRAGVKKV 276 T LGS YTQI+TFA VIA L P+GL GRA VKKV Sbjct: 256 TTTLGSGYTQILTFALVIAALAWRPNGLFGRAEVKKV 292 >ref|ZP_06684921.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] gb|EFF78272.1| branched-chain amino acid ABC superfamily ATP binding cassette transporter, permease protein [Achromobacter piechaudii ATCC 43553] Length = 292 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 180/277 (64%), Positives = 218/277 (78%), Gaps = 1/277 (0%) Query: 1 MYGLLALGFHVTYAVSGTVNFSQGSSMTLGAVAGYFFLVLWGWPAAAGIPAVLLVCALYG 60 MYGL+ALGF++TYAVSGTVNF+QGSSM LGAV Y F GWP A + L++C +YG Sbjct: 16 MYGLMALGFYLTYAVSGTVNFAQGSSMMLGAVLTYTFAQTLGWPLAPALLLALVLCGVYG 75 Query: 61 LLIERFAVRPFVQRGSDNWLMATVAVGIIVDNVMMFVFGKEPRSFPSVLAAKPIQIVE-G 119 L++ER AVRPF RGS+ WLM+TVA+GI++DNV+MF FGKEPRS PS LA P++I G Sbjct: 76 LVVERLAVRPFASRGSNAWLMSTVALGIVLDNVVMFTFGKEPRSLPSPLAQAPLEIGGLG 135 Query: 120 AGVYPLQLLIPVVGLLLALALHLLSRRTRHGVAMLAVVQNPNAARLMGINVSGAIAASYA 179 G+YPLQLLIP+VGL LA ALH LSRRTR GVA+LAVVQNPNAARLMGI V AI A++A Sbjct: 136 LGIYPLQLLIPLVGLALAAALHTLSRRTRWGVALLAVVQNPNAARLMGIPVRHAIMAAFA 195 Query: 180 VSAMLAGVAALLIAPLFNVSSEMGTLFGIKAFAAAIIGGLGSAWGVMLAGLCLGLIEVFA 239 VS + AGVA L+APLFNV ++MGTLFG+KA+ AI+GG+ SAWGVM+AGL G++E Sbjct: 196 VSTLFAGVAGALVAPLFNVQADMGTLFGLKAYVVAILGGITSAWGVMIAGLLFGVVEALI 255 Query: 240 TNYLGSVYTQIITFASVIAILVVLPHGLLGRAGVKKV 276 T LGS YTQII+F VI +L V P+GL GRA V+KV Sbjct: 256 TVALGSGYTQIISFTLVIVMLAVRPNGLFGRADVRKV 292