BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0095.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08628920.1| ABC transporter ATP-binding/permease protein ...   140   8e-32
ref|ZP_01881283.1| inner-membrane translocator ABC transporter [...    86   2e-15
ref|YP_002424026.1| ABC transporter [Methylobacterium chlorometh...    82   3e-14
ref|YP_003071311.1| ABC transporter ATP-binding protein [Methylo...    82   4e-14
ref|YP_001642290.1| ABC transporter-like protein [Methylobacteri...    80   8e-14

>ref|ZP_08628920.1| ABC transporter ATP-binding/permease protein [Bradyrhizobiaceae
           bacterium SG-6C]
 gb|EGP08279.1| ABC transporter ATP-binding/permease protein [Bradyrhizobiaceae
           bacterium SG-6C]
          Length = 845

 Score =  140 bits (352), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 83/102 (81%), Gaps = 1/102 (0%)

Query: 1   MPMIMSLSDLIVVLDGGKRIAIGDAAAIRNDPLVRKAYLGDAPSGERR-RAPRPAKQGTA 59
           MPMIMSLSD IVVLDGGKRIA+G+ A IRNDPLVRKAYLGDA + E++ R PR       
Sbjct: 539 MPMIMSLSDHIVVLDGGKRIAVGEPADIRNDPLVRKAYLGDATAKEQQHRPPRQVSSEIM 598

Query: 60  LEVRTLDAFYGLSRALGGIDLAVAPGEAIAVLGANGAGKTTL 101
           LE+R LDAFYGLS+AL  ID+ VA GEAIAVLGANGAGKTTL
Sbjct: 599 LEIRKLDAFYGLSQALESIDVTVANGEAIAVLGANGAGKTTL 640



 Score = 34.3 bits (77), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query: 50  APRPAKQGTALEVRTLDAFYGLSRALGGIDLAVAPGEAIAVLGANGAGKTT 100
           A R A    +L+V  L   +G  RA+  +     PG   +V+G NGAGKT+
Sbjct: 330 ALRVASGAPSLDVSDLSIAFGGVRAVQNVSFTAQPGHVTSVIGPNGAGKTS 380


>ref|ZP_01881283.1| inner-membrane translocator ABC transporter [Roseovarius sp.
           TM1035]
 gb|EDM30248.1| inner-membrane translocator ABC transporter [Roseovarius sp.
           TM1035]
          Length = 846

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MPMIMSLSDLIVVLDGGKRIAIGDAAAIRNDPLVRKAYLGDAPSGERRRAPRPAKQGT-- 58
           M MIM +SD I+VLD G  I  G  + ++NDP VR+AYLGD+    R R+    + G   
Sbjct: 549 MSMIMRISDEIIVLDAGVPIKTGAPSDVQNDPAVRRAYLGDSAYQGRERSTPWIRGGKKD 608

Query: 59  ALEVRTLDAFYGLSRALGGIDLAVAPGEAIAVLGANGAGKTTL 101
            L  R+L A YG + AL  +D+ V PGE +AVLGANGAGK+T+
Sbjct: 609 VLSTRSLTAGYGAAAALDSLDMDVQPGEMVAVLGANGAGKSTM 651


>ref|YP_002424026.1| ABC transporter [Methylobacterium chloromethanicum CM4]
 gb|ACK86098.1| ABC transporter related [Methylobacterium chloromethanicum CM4]
          Length = 823

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 1   MPMIMSLSDLIVVLDGGKRIAIGDAAAIRNDPLVRKAYLGDAPSGER-RRAPRPAKQGTA 59
           MP++M +SD I+V+D G+ IA G  A +R DP V +AYLG A +  R R AP        
Sbjct: 531 MPLVMGVSDRILVMDAGRPIARGTPAEVRRDPAVLRAYLGAAETPARPRAAPWSGPADAV 590

Query: 60  LEVRTLDAFYGLSRALGGIDLAVAPGEAIAVLGANGAGKTTL 101
           L    L A YG +  L GIDL V PGE +A+LG+NGAGK+T+
Sbjct: 591 LSAHGLRAGYGAAPVLDGIDLTVRPGETVALLGSNGAGKSTV 632


>ref|YP_003071311.1| ABC transporter ATP-binding protein [Methylobacterium extorquens
           DM4]
 emb|CAX27509.1| putative ABC transporter, putative membrane protein precursor with
           two ATP-binding domains [Methylobacterium extorquens
           DM4]
          Length = 823

 Score = 81.6 bits (200), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 1   MPMIMSLSDLIVVLDGGKRIAIGDAAAIRNDPLVRKAYLGDAPSGER-RRAPRPAKQGTA 59
           MP++M +SD I+V+D G+ IA G  A +R DP V +AYLG A +  R R AP        
Sbjct: 531 MPLVMGVSDRILVMDAGRPIARGTPAEVRRDPAVLRAYLGAAETPARPRAAPWSGPADAV 590

Query: 60  LEVRTLDAFYGLSRALGGIDLAVAPGEAIAVLGANGAGKTTL 101
           L    L A YG +  L GIDL V PGE +A+LG+NGAGK+T+
Sbjct: 591 LSAHGLRAGYGAAPVLDGIDLTVRPGETVALLGSNGAGKSTV 632


>ref|YP_001642290.1| ABC transporter-like protein [Methylobacterium extorquens PA1]
 gb|ABY33219.1| ABC transporter related [Methylobacterium extorquens PA1]
          Length = 823

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 1/102 (0%)

Query: 1   MPMIMSLSDLIVVLDGGKRIAIGDAAAIRNDPLVRKAYLGDAPSGER-RRAPRPAKQGTA 59
           MP++M +SD I+V+D G+ IA G  A +R DP V +AYLG A +  R R AP        
Sbjct: 531 MPLVMGVSDRILVMDAGRPIARGTPAEVRRDPAVLRAYLGAAETPARPRSAPWSGPADAV 590

Query: 60  LEVRTLDAFYGLSRALGGIDLAVAPGEAIAVLGANGAGKTTL 101
           L    L A YG +  L GI LAV PGE +A+LG+NGAGK+T+
Sbjct: 591 LSAHGLRAGYGAAPVLDGIALAVRPGETVALLGSNGAGKSTV 632