BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0082.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768909.1| ABC transporter sugar-binding protein [Bradyrhi... 577 e-163 ref|ZP_06896956.1| ribose ABC superfamily ATP binding cassette t... 381 e-104 ref|YP_001241986.1| putative sugar (D-ribose) ABC transporter pe... 334 1e-89 ref|YP_001207523.1| putative sugar (D-ribose) ABC transporter pe... 331 9e-89 ref|NP_105715.1| sugar (D-ribose) ABC transporter, periplasmic s... 308 6e-82 >ref|NP_768909.1| ABC transporter sugar-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47534.1| ABC transporter sugar-binding protein [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 577 bits (1488), Expect = e-163, Method: Compositional matrix adjust. Identities = 298/321 (92%), Positives = 304/321 (94%), Gaps = 1/321 (0%) Query: 1 MKVSTRELIVPLLAGAAALAMATGVAQAQQKKTIALVTNVAADFWTIAGRGLEKAQKEHP 60 M S +LIVPLLA AA A +AQAQQKKTIALVTNVAADFWTIAGRGLEKAQKEHP Sbjct: 10 MNGSRTKLIVPLLAAAALAMTAG-MAQAQQKKTIALVTNVAADFWTIAGRGLEKAQKEHP 68 Query: 61 DYNIELIVTNEGTAAGQRRELDDLLVRGVAGISISVDDAPHATEELNKVAAKTVLITTDS 120 DYNIELIVTNEGTAAGQRRELDDLLVRGVAGISISVDDAPHATE+LNKVAAKTVLITTDS Sbjct: 69 DYNIELIVTNEGTAAGQRRELDDLLVRGVAGISISVDDAPHATEQLNKVAAKTVLITTDS 128 Query: 121 DAPQSNRLAYIGTDNVAAGRQAGEEIKKALPNGGKIALFVGTMDADNARERVQGIKEAIA 180 DAPQSNRLAYIGTDNVAAGRQAGEEIKKALPNGGKIALFVGTMDADNARERVQGIKEAIA Sbjct: 129 DAPQSNRLAYIGTDNVAAGRQAGEEIKKALPNGGKIALFVGTMDADNARERVQGIKEAIA 188 Query: 181 GTKVELVDVFTDQVDFAKAKANMENVLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGKV 240 GTKVELVDVFTDQVDFAKAKANMENVLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGKV Sbjct: 189 GTKVELVDVFTDQVDFAKAKANMENVLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGKV 248 Query: 241 KIVGFDEDQRTLRGISDGTIESTVVQQPYEFGYLSASNIIKTLNGDKSWIPKDSKLIVPT 300 KIVGFDEDQRTLRG+SDGTIESTVVQQPYEFGYLSA+NIIKTLNGDKSWIP KLIVPT Sbjct: 249 KIVGFDEDQRTLRGVSDGTIESTVVQQPYEFGYLSATNIIKTLNGDKSWIPAGGKLIVPT 308 Query: 301 KVISKTNVAEFAAHLKELLKK 321 KVISK+NVAEF A LK LLKK Sbjct: 309 KVISKSNVAEFTADLKALLKK 329 >ref|ZP_06896956.1| ribose ABC superfamily ATP binding cassette transporter, binding protein [Roseomonas cervicalis ATCC 49957] gb|EFH11342.1| ribose ABC superfamily ATP binding cassette transporter, binding protein [Roseomonas cervicalis ATCC 49957] Length = 320 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 175/295 (59%), Positives = 233/295 (78%) Query: 26 AQAQQKKTIALVTNVAADFWTIAGRGLEKAQKEHPDYNIELIVTNEGTAAGQRRELDDLL 85 A AQ+++T+A V NV+ADFWTIA RG+EKA +EHP +N+E+IV + +AA QRR +D+LL Sbjct: 24 AAAQERRTLAFVVNVSADFWTIARRGIEKANREHPQFNMEMIVPGQASAAEQRRIVDELL 83 Query: 86 VRGVAGISISVDDAPHATEELNKVAAKTVLITTDSDAPQSNRLAYIGTDNVAAGRQAGEE 145 R VAGI+IS + ++TE LN+ A++ VL TTDSDAP SNR+ YIGTDNVAAGR+AG++ Sbjct: 84 ARRVAGIAISAINPGNSTEMLNRAASQAVLFTTDSDAPNSNRVVYIGTDNVAAGREAGKQ 143 Query: 146 IKKALPNGGKIALFVGTMDADNARERVQGIKEAIAGTKVELVDVFTDQVDFAKAKANMEN 205 +K ALP GGK LFVGTMDADNARERVQGI+EA+ G +E+VD+ TD+ D A+AK N+E+ Sbjct: 144 MKAALPQGGKAMLFVGTMDADNARERVQGIREALQGGNIEVVDIRTDESDMARAKRNVED 203 Query: 206 VLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGKVKIVGFDEDQRTLRGISDGTIESTVV 265 L + DI L+ GLW+Y TP IY AVK AG+ GKV+IVGFDED TLRG+++G I STVV Sbjct: 204 TLARRSDIDLMVGLWAYNTPQIYQAVKGAGRDGKVRIVGFDEDGLTLRGVAEGVIHSTVV 263 Query: 266 QQPYEFGYLSASNIIKTLNGDKSWIPKDSKLIVPTKVISKTNVAEFAAHLKELLK 320 QQP+EFGY S ++K L GD+S+IP+ ++I+PT++I + NV EF A ++ELL+ Sbjct: 264 QQPFEFGYQSMVGMVKYLGGDRSFIPESKQIIIPTRIIDRGNVQEFQAQMRELLR 318 >ref|YP_001241986.1| putative sugar (D-ribose) ABC transporter periplasmic binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38080.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Bradyrhizobium sp. BTAi1] Length = 317 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 171/312 (54%), Positives = 222/312 (71%), Gaps = 3/312 (0%) Query: 13 LAGAAA-LAMATGV--AQAQQKKTIALVTNVAADFWTIAGRGLEKAQKEHPDYNIELIVT 69 +AGA+A LAM GV A A KK +A V N A+DFW IA G++KAQ E PDY+++L Sbjct: 6 MAGASAVLAMVLGVGSAGAADKKVLAFVVNGASDFWKIAEAGVKKAQGELPDYSLQLKYP 65 Query: 70 NEGTAAGQRRELDDLLVRGVAGISISVDDAPHATEELNKVAAKTVLITTDSDAPQSNRLA 129 + AA Q+R LDDL+ G AGI +S D + TE LNKVAA+TVL TTDSDAPQS R+A Sbjct: 66 EQAAAAVQQRMLDDLVAAGAAGIMVSAVDPKNQTEHLNKVAAQTVLFTTDSDAPQSKRIA 125 Query: 130 YIGTDNVAAGRQAGEEIKKALPNGGKIALFVGTMDADNARERVQGIKEAIAGTKVELVDV 189 YIG+ N G+ AG+ + KALPNGGK FVG + ADNARER++G+KE I G+KVELVDV Sbjct: 126 YIGSSNTELGKDAGKLMLKALPNGGKCVGFVGLLGADNARERIEGVKETIKGSKVELVDV 185 Query: 190 FTDQVDFAKAKANMENVLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGKVKIVGFDEDQ 249 D++D +AK N+E++L PD++ L G +SY TP IY+ +K AGK GK+KI+GFDED Sbjct: 186 RGDEIDQTRAKRNVEDILAAMPDVSCLVGFYSYNTPRIYEVLKEAGKLGKIKIIGFDEDP 245 Query: 250 RTLRGISDGTIESTVVQQPYEFGYLSASNIIKTLNGDKSWIPKDSKLIVPTKVISKTNVA 309 TL G+ DG IE TVVQQP+E+GY + K + GDKS +P + +IVP KVI K+NV Sbjct: 246 ITLGGVKDGAIEGTVVQQPFEWGYQGMKLMAKVVQGDKSGVPANGIIIVPGKVIEKSNVD 305 Query: 310 EFAAHLKELLKK 321 +F A +K++LKK Sbjct: 306 DFMAQMKQMLKK 317 >ref|YP_001207523.1| putative sugar (D-ribose) ABC transporter periplasmic binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79306.1| Putative sugar (D-ribose) ABC transporter (periplasmic binding protein) [Bradyrhizobium sp. ORS 278] Length = 317 Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 167/312 (53%), Positives = 218/312 (69%), Gaps = 2/312 (0%) Query: 12 LLAGAAALAMATGV--AQAQQKKTIALVTNVAADFWTIAGRGLEKAQKEHPDYNIELIVT 69 ++ +A LAMA G+ A A KK +A V N A+DFW IA GL+KAQ E PDY ++L Sbjct: 6 MVGASALLAMALGMGSAGAADKKVLAFVVNGASDFWKIAEAGLKKAQGELPDYTLQLKYP 65 Query: 70 NEGTAAGQRRELDDLLVRGVAGISISVDDAPHATEELNKVAAKTVLITTDSDAPQSNRLA 129 + AA Q+R LDDL+ G AGI +S D + TE LNK+A +TVL TTDSDAPQS R+A Sbjct: 66 EQAAAAVQQRMLDDLVAAGAAGIMVSAVDPKNQTEHLNKIAGQTVLFTTDSDAPQSKRIA 125 Query: 130 YIGTDNVAAGRQAGEEIKKALPNGGKIALFVGTMDADNARERVQGIKEAIAGTKVELVDV 189 YIG+ N G+ AG+ + KALPNGGK FVG + ADNARER++G+KE I G+KVELVDV Sbjct: 126 YIGSSNTELGKDAGKLMLKALPNGGKCVGFVGLLGADNARERIEGVKETIKGSKVELVDV 185 Query: 190 FTDQVDFAKAKANMENVLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGKVKIVGFDEDQ 249 D++D +AK N+E++L PD++ L G +SY TP IY+ +K AGK GK+KI+GFDED Sbjct: 186 RGDEIDQTRAKRNVEDILAAMPDVSCLVGFYSYNTPRIYEVLKEAGKLGKIKIIGFDEDP 245 Query: 250 RTLRGISDGTIESTVVQQPYEFGYLSASNIIKTLNGDKSWIPKDSKLIVPTKVISKTNVA 309 TL G+ DG IE TVVQQP+E+GY + K + GDKS +P + +IVP KVI K+NV Sbjct: 246 ITLGGVKDGAIEGTVVQQPFEWGYQGMKLMAKVVQGDKSGVPANGIIIVPGKVIEKSNVD 305 Query: 310 EFAAHLKELLKK 321 +F A +K +LKK Sbjct: 306 DFMAQMKTMLKK 317 >ref|NP_105715.1| sugar (D-ribose) ABC transporter, periplasmic sugar-binding protein [Mesorhizobium loti MAFF303099] dbj|BAB51501.1| sugar (D-ribose) ABC transporter, periplasmic sugar-binding protein [Mesorhizobium loti MAFF303099] Length = 320 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 152/299 (50%), Positives = 211/299 (70%) Query: 23 TGVAQAQQKKTIALVTNVAADFWTIAGRGLEKAQKEHPDYNIELIVTNEGTAAGQRRELD 82 T +A+A K T+A V N A+DFW A G++KAQ E PDYN+EL + + A Q+R +D Sbjct: 22 TAIARADDKPTLAFVVNGASDFWKAAEAGVKKAQGELPDYNLELKYPEQSSVAIQQRLMD 81 Query: 83 DLLVRGVAGISISVDDAPHATEELNKVAAKTVLITTDSDAPQSNRLAYIGTDNVAAGRQA 142 DL+ GV GI +S D +T+ LNK+A++T L TTDSDAPQ+ R+AYIG+ NV AG+QA Sbjct: 82 DLVTAGVKGIMVSAVDPKTSTDGLNKIASQTALFTTDSDAPQTKRVAYIGSSNVDAGKQA 141 Query: 143 GEEIKKALPNGGKIALFVGTMDADNARERVQGIKEAIAGTKVELVDVFTDQVDFAKAKAN 202 E KKA+PNGGK FVG + ADNA+ER+QG+K+ +AGTK+ELVDV D +D A+AK N Sbjct: 142 AEIAKKAMPNGGKCLGFVGLLGADNAKERIQGMKDGLAGTKIELVDVRGDDIDQARAKKN 201 Query: 203 MENVLVKYPDIALLSGLWSYETPLIYDAVKAAGKAGKVKIVGFDEDQRTLRGISDGTIES 262 +E+ LV PD+ + G +SY TP IY+A++ AGK G++ +VGFD+D TL G+ +GT+ + Sbjct: 202 VEDALVASPDVTCMVGFYSYNTPRIYEALRDAGKLGQITVVGFDDDPITLGGVKEGTVAA 261 Query: 263 TVVQQPYEFGYLSASNIIKTLNGDKSWIPKDSKLIVPTKVISKTNVAEFAAHLKELLKK 321 TVVQQP+E+ Y + L GDKS IP + +I+PTK+I K +V +AA+LK + K Sbjct: 262 TVVQQPFEWAYQGMKLMAAYLKGDKSGIPAGNLIIIPTKIIGKDDVDAYAANLKAMAGK 320