BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0080.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768908.1| transcriptional regulator [Bradyrhizobium japon... 369 e-100 ref|ZP_01113811.1| probable transcriptional regulator [Reinekea ... 160 3e-37 ref|ZP_01751195.1| xylose operon repressor [Roseobacter sp. CCS2... 141 9e-32 ref|ZP_05054528.1| ROK family protein [Octadecabacter antarcticu... 139 7e-31 ref|ZP_01004256.1| xylose operon repressor [Loktanella vestfolde... 135 1e-29 >ref|NP_768908.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47533.1| bll2268 [Bradyrhizobium japonicum USDA 110] Length = 423 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/227 (84%), Positives = 207/227 (91%), Gaps = 2/227 (0%) Query: 1 VIAQIDTMLEATVTPRHRLLGIGIALQGIVDGDTGRHLWSPALSITDVDLAKPIRQAFGV 60 VIAQI+ ML+AT TPRH+LLGIG+ALQGIV+ DTGR LWSPALSITDVDLA PIRQAFGV Sbjct: 151 VIAQINAMLDATATPRHQLLGIGLALQGIVNADTGRTLWSPALSITDVDLATPIRQAFGV 210 Query: 61 EVVMANDAVAVALSLAAAEPALAQGLTATIMVGHGVGMGIIVDGEARWGAGAGSEIGHVK 120 EVVMANDAVAVAL+L AAEPALA+GL+ATIMVGHG+GMG++ DGEA WGAG SEIGHVK Sbjct: 211 EVVMANDAVAVALALTAAEPALAEGLSATIMVGHGIGMGVVADGEAHWGAG--SEIGHVK 268 Query: 121 LGLNGPQCRCGQRGCIEAHLADYALYRDARTFLDLPPAASQQPSEAQMALLHDRARSGDS 180 L +GPQCRCGQRGCIEA+LADYALYRDARTFLDLPPA SQQPSEAQMALL +RA GD Sbjct: 269 LAPDGPQCRCGQRGCIEAYLADYALYRDARTFLDLPPADSQQPSEAQMALLRERALGGDP 328 Query: 181 RLEHLFQQAGHALAEAVATTISVLRPHHVILAGPGLQAFDMMRSAYE 227 RLE+LFQQAG ALAEAVA TISVLRPHHVILAGPGLQAFDMMR AYE Sbjct: 329 RLENLFQQAGRALAEAVAATISVLRPHHVILAGPGLQAFDMMRLAYE 375 >ref|ZP_01113811.1| probable transcriptional regulator [Reinekea sp. MED297] gb|EAR10190.1| probable transcriptional regulator [Reinekea sp. MED297] Length = 394 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 128/219 (58%), Gaps = 5/219 (2%) Query: 9 LEATVTPRHRLLGIGIALQGIVDGDTGRHLWSPALSITDVDLAKPIRQAFGVEVVMANDA 68 A+V R +GIA+QG+V+G G +WSPAL++ V L + Q + V +ANDA Sbjct: 135 FNASVPAHKRPKALGIAVQGVVNGLNGEIIWSPALAVRKVPLKHELEQRIQLPVTIANDA 194 Query: 69 VAVALSLAAAEPALAQGLT--ATIMVGHGVGMGIIVDGEARWGA-GAGSEIGHVKLGLNG 125 L++A Q LT A IM+G+G+GMG++++GE G GA +E GH K G Sbjct: 195 NC--LTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGAAAEFGHSKYYPEG 252 Query: 126 PQCRCGQRGCIEAHLADYALYRDARTFLDLPPAASQQPSEAQMALLHDRARSGDSRLEHL 185 QC CG+RGCIEA++ DYALYRDA L S P+E M +L ++A S L L Sbjct: 253 AQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTEDSMQVLVNKAESDSKELRDL 312 Query: 186 FQQAGHALAEAVATTISVLRPHHVILAGPGLQAFDMMRS 224 FQ+AG L ++ I++L +I++GPG +A+ +M + Sbjct: 313 FQRAGRVLGHGISNLIALLSLEKIIISGPGSRAYHLMEA 351 >ref|ZP_01751195.1| xylose operon repressor [Roseobacter sp. CCS2] gb|EBA11503.1| xylose operon repressor [Roseobacter sp. CCS2] Length = 421 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 3/221 (1%) Query: 5 IDTMLEATVTPRHRLLGIGIALQGIVDGDTGRHLWSPALSITDVDLAKPIRQAFGVEVVM 64 +D L+ P + +G+ + GI+D +TG WSP L+ +DVDL FGV V + Sbjct: 150 MDLALKEAKMPLSEVSAVGVGMSGIIDHNTGTIAWSPFLNTSDVDLRTAFLARFGVPVHV 209 Query: 65 ANDAVAVALSLAAAEPALAQGLTATIMVGHGVGMGIIVDGEARWGA-GAGSEIGHVKLGL 123 ND ++L+ + A + + +GVGMG+++D GA G G E+GH K+ L Sbjct: 210 DNDTNVLSLAELWFGAGRSISDFAVVTIENGVGMGLVLDNRLFRGARGMGLELGHTKVQL 269 Query: 124 NGPQCRCGQRGCIEAHLADYALYRDARTFLDLPPAASQQPSEAQMALLHDRARSGDSRLE 183 +G CRCGQRGC+EA+LADYAL R+A T LD P Q + A M L +A+SG+ Sbjct: 270 DGALCRCGQRGCLEAYLADYALAREAATALDRNPRIPQS-TNAMMDTLFTQAKSGNEAAR 328 Query: 184 HLFQQAGHALAEAVATTISVLRPHHVILAGPGLQAFDMMRS 224 +F++AG L+ ++ I + P +IL+G +Q +D + S Sbjct: 329 TIFRRAGRYLSVGLSNVIQLFDPGLIILSGERMQ-YDYLYS 368 >ref|ZP_05054528.1| ROK family protein [Octadecabacter antarcticus 307] gb|EDY75428.1| ROK family protein [Octadecabacter antarcticus 307] Length = 392 Score = 139 bits (349), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 122/214 (57%), Gaps = 2/214 (0%) Query: 5 IDTMLEATVTPRHRLLGIGIALQGIVDGDTGRHLWSPALSITDVDLAKPIRQAFGVEVVM 64 I +L+ + + + +GI L GI+D ++G +WS L D DL Q F + +V+ Sbjct: 119 IHKLLKVSGKNQSDVRAVGIGLPGIIDHNSGVVVWSSMLQTRDEDLGAAFAQRFDMPMVL 178 Query: 65 ANDAVAVALSLAAAEPALAQGLTATIMVGHGVGMGIIVDGE-ARWGAGAGSEIGHVKLGL 123 NDA + L+ A A + + GVGMG++++ E R G G G E+GH K+ L Sbjct: 179 DNDANMLTLAELWFGQGRAMANFAVVTIESGVGMGLVLNNELYRGGHGMGLELGHTKVQL 238 Query: 124 NGPQCRCGQRGCIEAHLADYALYRDARTFLDLPPAASQQPSEAQMALLHDRARSGDSRLE 183 +G CRCGQRGC+EA+LADYAL R+A T LD P + P +A + L+ +A+SG E Sbjct: 239 DGALCRCGQRGCLEAYLADYALSREATTALDHDPTMANNP-QATLEALYKQAKSGHKAAE 297 Query: 184 HLFQQAGHALAEAVATTISVLRPHHVILAGPGLQ 217 +F++AG L+ ++ + + P +IL+G +Q Sbjct: 298 TIFRRAGRYLSLGLSNVVQLFDPALIILSGERMQ 331 >ref|ZP_01004256.1| xylose operon repressor [Loktanella vestfoldensis SKA53] gb|EAQ05825.1| xylose operon repressor [Loktanella vestfoldensis SKA53] Length = 421 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 3 AQIDTMLEATVTPRHRLLGIGIALQGIVDGDTGRHLWSPALSITDVDLAKPIRQAFGVEV 62 A +D +L+A + +G+ L G+VD +G WSP LS D D FGV + Sbjct: 148 ALMDLVLKAAGKSLSDISAVGVGLSGLVDHSSGMVAWSPLLSGRDTDFQTAFVGRFGVPL 207 Query: 63 VMANDAVAVALSLAAAEPALAQGLTATIMVGHGVGMGIIVDGEARWGA-GAGSEIGHVKL 121 ++ ND+ + L+ + A + + HGVGMG+++D G+ G G E+GH K+ Sbjct: 208 LVDNDSNVLTLAELWFGAGRSMSDFAVVTIEHGVGMGLVLDNRLFRGSRGMGLELGHTKV 267 Query: 122 GLNGPQCRCGQRGCIEAHLADYALYRDARTFLDLPPAASQQPSEAQMALLHDRARSGDSR 181 L+G CRCGQRGC+EA+LADYAL R+A T L P +QQ + A + L +A+SG+ Sbjct: 268 QLDGALCRCGQRGCLEAYLADYALAREAATALHRNP-RNQQSAHAMLDALFSQAKSGNEA 326 Query: 182 LEHLFQQAGHALAEAVATTISVLRPHHVILAGPGLQAFDMM 222 +F++AG L+ ++ I + P +IL+G +Q +D + Sbjct: 327 ARTIFRRAGRYLSVGLSNVIQLFDPELIILSGERMQ-YDYL 366