BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0060.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002973314.1| ATPase [Rhizobium leguminosarum bv. trifolii... 429 e-118 ref|YP_767519.1| hypothetical protein RL1917 [Rhizobium legumino... 423 e-116 ref|YP_002540840.1| methanol dehydrogenase regulator MoxR-like p... 422 e-116 ref|ZP_04959129.1| MoxR domain protein [gamma proteobacterium NO... 417 e-114 ref|ZP_05780041.1| ATPase associated with various cellular activ... 412 e-113 >ref|YP_002973314.1| ATPase [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS59353.1| ATPase associated with various cellular activities AAA_3 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 325 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/320 (62%), Positives = 260/320 (81%), Gaps = 3/320 (0%) Query: 45 AARDAVLDLKARIGKSVLGQDHLVESMLIGLLANGNLLIESLPGLAKTRAVKTLAKNLAA 104 ARD +LDL RIG+S++GQ+ +VE +L+GLLANG+LL+E LPGLAKTRA+K+LAKNL + Sbjct: 2 TARDEILDLGTRIGRSIIGQETMVERLLLGLLANGHLLVEGLPGLAKTRAIKSLAKNLDS 61 Query: 105 DLSRVQFTPDLLPSDVTGAEIYLQTEKGGQFQFQKGPIFANLVLADEINRAPAKVQSALL 164 +LSRVQFTPDLLP+D+TG+EIY G+F+FQ+GPIFANL+LADEINRAPAKVQSALL Sbjct: 62 ELSRVQFTPDLLPADITGSEIYFSEGGKGEFKFQQGPIFANLILADEINRAPAKVQSALL 121 Query: 165 EAMEERQVTVAGKTYKMPDLFMVLATENPIEQEGTYPLPEAQLDRFLMHVVITYPDEATE 224 EAMEERQVTV GK+Y +P LFMV+AT+NPIEQEGTYPLPEAQLDRFLMHV + YPDEA+E Sbjct: 122 EAMEERQVTVGGKSYPLPPLFMVMATQNPIEQEGTYPLPEAQLDRFLMHVEVGYPDEASE 181 Query: 225 GEIIKLNRAENARKPEAGAAEPPP--VPQQAVLDARGELDGIFVSDLAQKYIVDLIYATR 282 I++LNR E + GA P P + Q V DAR E+ + VS+ +KY+V L++ATR Sbjct: 182 AAIMRLNRNEE-NQTHGGAKPPSPEKLNPQGVFDARKEIGTVTVSEPVEKYMVALVFATR 240 Query: 283 FPGRYGEPLSKWIQIGASPRGSLAIDRCARARAWLDGQDFVTPDHIRAVIHDCLRHRLIL 342 +P RY + L++ +Q+GASPRG++ +D+ +R+ AWL G+D+VTPD ++A++HD RHRLIL Sbjct: 241 YPNRYDKDLARLLQVGASPRGAIGLDKVSRSYAWLKGRDYVTPDDVKAIVHDVFRHRLIL 300 Query: 343 SYEAVSQGISPDQVIDKITE 362 SYEA + +PD+VID+I E Sbjct: 301 SYEAHASNTTPDKVIDRIVE 320 >ref|YP_767519.1| hypothetical protein RL1917 [Rhizobium leguminosarum bv. viciae 3841] emb|CAK07410.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 325 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/322 (61%), Positives = 259/322 (80%), Gaps = 7/322 (2%) Query: 45 AARDAVLDLKARIGKSVLGQDHLVESMLIGLLANGNLLIESLPGLAKTRAVKTLAKNLAA 104 +AR+ VL L RIGKS++GQ+ +VE +L+GLLANG+LL+E LPGLAKTRA+K+LAKNL + Sbjct: 2 SAREDVLQLGQRIGKSIIGQEAMVERLLLGLLANGHLLVEGLPGLAKTRAIKSLAKNLDS 61 Query: 105 DLSRVQFTPDLLPSDVTGAEIYLQTEKGGQFQFQKGPIFANLVLADEINRAPAKVQSALL 164 +LSRVQFTPDLLP+D+TG+EIY G+F+FQ+GPIFANL+LADEINRAPAKVQSALL Sbjct: 62 ELSRVQFTPDLLPADITGSEIYFSEGGKGEFKFQQGPIFANLILADEINRAPAKVQSALL 121 Query: 165 EAMEERQVTVAGKTYKMPDLFMVLATENPIEQEGTYPLPEAQLDRFLMHVVITYPDEATE 224 EAMEERQVTV GK+Y +P LFMV+AT+NPIEQEGTYPLPEAQLDRFLMHV + YPDE +E Sbjct: 122 EAMEERQVTVGGKSYPLPPLFMVMATQNPIEQEGTYPLPEAQLDRFLMHVEVGYPDETSE 181 Query: 225 GEIIKLNRAENARKPEAGAAEPPPVPQ----QAVLDARGELDGIFVSDLAQKYIVDLIYA 280 I++LNR E + PP+P+ QA+ DAR E+ + VS+ +KY+V L++A Sbjct: 182 AAIMRLNRDEEN---QTHGGTKPPLPEKLNPQAIFDARKEIGAVTVSEPVEKYMVALVFA 238 Query: 281 TRFPGRYGEPLSKWIQIGASPRGSLAIDRCARARAWLDGQDFVTPDHIRAVIHDCLRHRL 340 TR+P RY + L++ +Q+GASPRG + +D+ +R+ AWL G+D+VTPD ++A++HD RHRL Sbjct: 239 TRYPDRYDKDLARLLQVGASPRGVIGLDKVSRSYAWLKGRDYVTPDDVKAIVHDVFRHRL 298 Query: 341 ILSYEAVSQGISPDQVIDKITE 362 ILSYEA + +PD+VID+I E Sbjct: 299 ILSYEAHASNTTPDKVIDRIVE 320 >ref|YP_002540840.1| methanol dehydrogenase regulator MoxR-like protein [Agrobacterium radiobacter K84] gb|ACM29245.1| methanol dehydrogenase regulator MoxR-like protein [Agrobacterium radiobacter K84] Length = 325 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/317 (62%), Positives = 258/317 (81%), Gaps = 1/317 (0%) Query: 46 ARDAVLDLKARIGKSVLGQDHLVESMLIGLLANGNLLIESLPGLAKTRAVKTLAKNLAAD 105 ARD +L L RIG+S++GQD ++E +L+GLLANG+LL+E LPGLAKTRA+K+LAKNL ++ Sbjct: 3 ARDDILQLGKRIGQSIIGQDAMIERLLLGLLANGHLLVEGLPGLAKTRAIKSLAKNLDSE 62 Query: 106 LSRVQFTPDLLPSDVTGAEIYLQTEKGGQFQFQKGPIFANLVLADEINRAPAKVQSALLE 165 LSRVQFTPDLLP+D+TG+EIY +F+FQ+GPIFANL+LADEINRAPAKVQSALLE Sbjct: 63 LSRVQFTPDLLPADITGSEIYFSDGGKSEFKFQQGPIFANLILADEINRAPAKVQSALLE 122 Query: 166 AMEERQVTVAGKTYKMPDLFMVLATENPIEQEGTYPLPEAQLDRFLMHVVITYPDEATEG 225 AMEERQVTV GK+Y +P LFMV+AT+NPIEQEGTYPLPEAQLDRFLMHV + YPDEA+E Sbjct: 123 AMEERQVTVGGKSYPLPPLFMVMATQNPIEQEGTYPLPEAQLDRFLMHVEVGYPDEASEA 182 Query: 226 EIIKLNR-AENARKPEAGAAEPPPVPQQAVLDARGELDGIFVSDLAQKYIVDLIYATRFP 284 I++LNR EN + A P + QA+ +AR ++ + VS+ +KYIV L++ATR+P Sbjct: 183 AIMRLNRDEENLAHSDHPATTPTRLAPQAIFNARKQIGAVKVSEPVEKYIVALVFATRYP 242 Query: 285 GRYGEPLSKWIQIGASPRGSLAIDRCARARAWLDGQDFVTPDHIRAVIHDCLRHRLILSY 344 RY + L+K +Q+GASPRG + +D+ +RA+AWL G+D+VTPD I+AV++D RHRLILSY Sbjct: 243 DRYDKDLAKLLQVGASPRGVIGLDKVSRAKAWLAGRDYVTPDDIKAVVNDVFRHRLILSY 302 Query: 345 EAVSQGISPDQVIDKIT 361 EA + ++ DQVID+IT Sbjct: 303 EAHASNVTADQVIDRIT 319 >ref|ZP_04959129.1| MoxR domain protein [gamma proteobacterium NOR51-B] gb|EED36713.1| MoxR domain protein [gamma proteobacterium NOR51-B] Length = 327 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/312 (62%), Positives = 246/312 (78%), Gaps = 4/312 (1%) Query: 53 LKARIGKSVLGQDHLVESMLIGLLANGNLLIESLPGLAKTRAVKTLAKNLAADLSRVQFT 112 LK R+ +S++GQ+ +VE ++IGLLANGNLL+E LPGLAKTRA+K LAKNL AD SR+QFT Sbjct: 9 LKTRMQQSIIGQEDVVERLIIGLLANGNLLVEGLPGLAKTRAIKALAKNLEADFSRIQFT 68 Query: 113 PDLLPSDVTGAEIYLQTEKGGQFQFQKGPIFANLVLADEINRAPAKVQSALLEAMEERQV 172 PDLLPSDVTG E+Y Q + G +F+F++GPIFAN+VL DEINRAPAKVQ+A+LEAMEERQV Sbjct: 69 PDLLPSDVTGTEVYYQADTGSEFRFEQGPIFANIVLGDEINRAPAKVQAAMLEAMEERQV 128 Query: 173 TVAGKTYKMPDLFMVLATENPIEQEGTYPLPEAQLDRFLMHVVITYPDEATEGEIIKLNR 232 TVAG T+ MP LFMV+AT+NP+EQEGTYPLPEAQLDRFLMH+ I YP E I+ L R Sbjct: 129 TVAGTTHHMPALFMVMATQNPVEQEGTYPLPEAQLDRFLMHITIDYPPVEDEVLIMNLVR 188 Query: 233 AE----NARKPEAGAAEPPPVPQQAVLDARGELDGIFVSDLAQKYIVDLIYATRFPGRYG 288 E + KP A + +PQQAV DAR + I +S+ ++YI DL+ ATR PG Y Sbjct: 189 GEENPSDDGKPSAASHSIEQIPQQAVFDARKAIAAIHMSEPIKRYIADLVCATRRPGDYS 248 Query: 289 EPLSKWIQIGASPRGSLAIDRCARARAWLDGQDFVTPDHIRAVIHDCLRHRLILSYEAVS 348 E L++WI +GASPR SLA+D+C+R AWL +DFV P+ +RA++HDCLRHRL+LSYEA S Sbjct: 249 EELNRWIDVGASPRASLALDKCSRTHAWLKERDFVDPEDVRAIVHDCLRHRLMLSYEARS 308 Query: 349 QGISPDQVIDKI 360 +G++PD VID + Sbjct: 309 EGVTPDVVIDAL 320 >ref|ZP_05780041.1| ATPase associated with various cellular activities AAA_3 [Citreicella sp. SE45] gb|EEX13805.1| ATPase associated with various cellular activities AAA_3 [Citreicella sp. SE45] Length = 334 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/322 (62%), Positives = 252/322 (78%), Gaps = 4/322 (1%) Query: 44 SAARDAVLDLKARIGKSVLGQDHLVESMLIGLLANGNLLIESLPGLAKTRAVKTLAKNLA 103 + AR + L+AR+G +++GQ ++E +LIGLLANGNLL+E LPGLAKTRA+K LA+N+ Sbjct: 7 TGARAQIDALRARMGDAIIGQREVIERLLIGLLANGNLLVEGLPGLAKTRAIKALARNME 66 Query: 104 ADLSRVQFTPDLLPSDVTGAEIYLQTEKGGQFQFQKGPIFANLVLADEINRAPAKVQSAL 163 D SR+QFTPDLLPSDVTG E+Y Q E GG F+F+ GPIFANLVLADEINRAPAKVQ+AL Sbjct: 67 CDFSRIQFTPDLLPSDVTGTEVYYQGEGGGSFRFEPGPIFANLVLADEINRAPAKVQAAL 126 Query: 164 LEAMEERQVTVAGKTYKMPDLFMVLATENPIEQEGTYPLPEAQLDRFLMHVVITYPDEAT 223 LEAMEERQVTVAG T++M LFMV+AT+NPIEQEGTYPLPEAQ+DRFLMHV ITYP Sbjct: 127 LEAMEERQVTVAGTTHRMEPLFMVMATQNPIEQEGTYPLPEAQMDRFLMHVNITYPPVED 186 Query: 224 EGEIIKLNRAEN--ARKPEAGAAEPP--PVPQQAVLDARGELDGIFVSDLAQKYIVDLIY 279 E E+I+L R+E A+ P GA P P+PQ+AV AR E+ + V+ ++YI DL+ Sbjct: 187 EVEVIRLVRSEEIAAQAPADGAHLEPRAPIPQKAVFAARREIAALPVAPAMERYIADLVN 246 Query: 280 ATRFPGRYGEPLSKWIQIGASPRGSLAIDRCARARAWLDGQDFVTPDHIRAVIHDCLRHR 339 ATR PG++G+ L +WI++GASPR SLA+D+C R AWL G+D+V P+ IRAV+ D LRHR Sbjct: 247 ATRVPGQFGDDLKRWIEVGASPRASLALDKCGRTHAWLAGRDYVDPEDIRAVVADVLRHR 306 Query: 340 LILSYEAVSQGISPDQVIDKIT 361 L LSYEA +G+SPD V+ +I Sbjct: 307 LGLSYEAQGEGVSPDAVVAEIV 328