BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0055.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001240799.1| putative ferrodoxin [Bradyrhizobium sp. BTAi...   171   4e-41
ref|YP_001831688.1| 4Fe-4S ferredoxin iron-sulfur binding domain...   135   1e-30
ref|YP_003276190.1| RnfABCDGE type electron transport complex su...   124   6e-27
gb|AAD31781.1|AF126200_3 ferredoxin AsfB [Pseudomonas putida]         123   9e-27
ref|ZP_06305807.1| 4Fe-4S ferredoxin, iron-sulfur binding [Raphi...   122   1e-26

>ref|YP_001240799.1| putative ferrodoxin [Bradyrhizobium sp. BTAi1]
 gb|ABQ36893.1| putative ferrodoxin [Bradyrhizobium sp. BTAi1]
          Length = 106

 Score =  171 bits (433), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/106 (73%), Positives = 90/106 (84%)

Query: 1   MIEVIDAERCTSCDICVNVCPTNVFDKTEGIPVIARQGDCQTCFLCELYCPEDALYVSPY 60
           MIE+ID ERCT+C+ICV  CPTNVFDKTEG+PVIARQ DCQTCFLCELYCPEDAL+VSP+
Sbjct: 1   MIEIIDPERCTACNICVTACPTNVFDKTEGLPVIARQADCQTCFLCELYCPEDALFVSPF 60

Query: 61  AEEPRPTDVVALRQTAALGSYRRAVGWTDETRDLRGIDRSYLLFGH 106
           AE+P+  DVVA RQ+  LGSYRRAVGWT ++  LR  DRS+ LFG 
Sbjct: 61  AEQPQGIDVVAARQSGLLGSYRRAVGWTKDSEHLREADRSFRLFGQ 106


>ref|YP_001831688.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Beijerinckia indica subsp. indica ATCC 9039]
 gb|ACB94199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 107

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/105 (60%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 1   MIEVIDAERCTSCDICVNVCPTNVFDKTEG-IPVIARQGDCQTCFLCELYCPEDALYVSP 59
           MIE+ID  RCTSC+ICV VCPTNVF   +  IPVIARQ DCQTCF+CELYCP DALYV+P
Sbjct: 1   MIEIIDPTRCTSCNICVKVCPTNVFGSVKNSIPVIARQSDCQTCFMCELYCPADALYVAP 60

Query: 60  YAEEPRPTDVVALRQTAALGSYRRAVGWTDETRDLRGIDRSYLLF 104
           + +E +  D+ A       GSYRRA+GWT ET  LR  D+S+ L 
Sbjct: 61  FTDELQIDDIHASHNNIDFGSYRRAIGWTKETNALRASDQSFELL 105


>ref|YP_003276190.1| RnfABCDGE type electron transport complex subunit B [Comamonas
           testosteroni CNB-2]
 ref|ZP_07046762.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni S44]
 gb|ACY30894.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni CNB-2]
 gb|EFI59561.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni S44]
          Length = 109

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 72/106 (67%), Gaps = 1/106 (0%)

Query: 1   MIEVIDAERCTSCDICVNVCPTNVFDKTEG-IPVIARQGDCQTCFLCELYCPEDALYVSP 59
           MIE+I +ERCT C+ICV+ CPTNVFD  +G  P IARQ DCQTCF+CELYCPEDALYV+P
Sbjct: 1   MIEIISSERCTGCNICVHACPTNVFDMVKGQAPRIARQSDCQTCFMCELYCPEDALYVAP 60

Query: 60  YAEEPRPTDVVALRQTAALGSYRRAVGWTDETRDLRGIDRSYLLFG 105
            A+     D ++    A LGSYR +VGW    +    +D SY L  
Sbjct: 61  VADAAAHVDELSPATQALLGSYRASVGWGKGRQSTAALDASYELLA 106


>gb|AAD31781.1|AF126200_3 ferredoxin AsfB [Pseudomonas putida]
          Length = 108

 Score =  123 bits (309), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 69/102 (67%), Gaps = 1/102 (0%)

Query: 1   MIEVIDAERCTSCDICVNVCPTNVFDKTEGIP-VIARQGDCQTCFLCELYCPEDALYVSP 59
           MIE+I AERCT CDICV VCPT+VF    G P VIARQ DCQTCF+CE+YCPEDAL+VSP
Sbjct: 1   MIELISAERCTGCDICVLVCPTDVFKAVPGQPPVIARQADCQTCFMCEVYCPEDALFVSP 60

Query: 60  YAEEPRPTDVVALRQTAALGSYRRAVGWTDETRDLRGIDRSY 101
            AEE    D   L +   LG YR A+GW    R    +D SY
Sbjct: 61  LAEEQAQVDERQLSERGLLGGYREALGWGKGRRSTAALDESY 102


>ref|ZP_06305807.1| 4Fe-4S ferredoxin, iron-sulfur binding [Raphidiopsis brookii D9]
 gb|EFA72193.1| 4Fe-4S ferredoxin, iron-sulfur binding [Raphidiopsis brookii D9]
          Length = 106

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 1/106 (0%)

Query: 1   MIEVIDAERCTSCDICVNVCPTNVFDKT-EGIPVIARQGDCQTCFLCELYCPEDALYVSP 59
           MIE++   RC  C+ICV VCPTNVFDK   G P+IARQ DCQTCF+CELYCP DALYV+P
Sbjct: 1   MIELVSESRCIKCNICVKVCPTNVFDKVVNGPPIIARQNDCQTCFMCELYCPVDALYVAP 60

Query: 60  YAEEPRPTDVVALRQTAALGSYRRAVGWTDETRDLRGIDRSYLLFG 105
             +     D   L + A LGSYR+ +GWT+  R+    D +YL+  
Sbjct: 61  EVDPLAQIDEKFLEEAALLGSYRKNIGWTELQRNTSNQDSTYLIIN 106