BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0053.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239293.1| D- and L-methionine ABC transporter permease... 320 7e-86 ref|YP_001206261.1| D-and L-methionine ABC transporter permease ... 320 8e-86 ref|ZP_08663495.1| binding-protein-dependent transport systems i... 303 2e-80 ref|NP_771142.1| ABC transporter permease [Bradyrhizobium japoni... 301 6e-80 ref|YP_001771265.1| binding-protein-dependent transport systems ... 300 8e-80 >ref|YP_001239293.1| D- and L-methionine ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ35387.1| D- and L-methionine ABC transporter, permease protein [Bradyrhizobium sp. BTAi1] Length = 221 Score = 320 bits (821), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 191/208 (91%), Positives = 200/208 (96%) Query: 1 MSRELINLIVQATGESLFMVSVAALVATALGLPLGVFLATSRKGELFAAPSANGVLGVIV 60 MS ELINLI+QATGESLFMVS AALVAT+LGLPLG+FLATSRKGELFAAPS N +LGV+V Sbjct: 1 MSPELINLIIQATGESLFMVSTAALVATSLGLPLGIFLATSRKGELFAAPSVNAILGVVV 60 Query: 61 NAARSTPFIILVVAIIPFTRLIAGTSIGSGAAIVPLTIAATPFIARLVEAAIREVDAGLI 120 NA RSTPFIILVVAIIPFTRL+AGTSIGSGAAIVPLT+AATPFIARLVEAAIREVD GLI Sbjct: 61 NATRSTPFIILVVAIIPFTRLVAGTSIGSGAAIVPLTVAATPFIARLVEAAIREVDGGLI 120 Query: 121 ETASSFGASPLQIVFKVLIPEALPGVVLALTLAVVSLLGYSAMVGAVVGGGLGDLGIRYG 180 ETASSFGA+PLQIVFKVLIPEALPG+VLALTLAVVSLLGYSAMVGAV GGGLGDLGIRYG Sbjct: 121 ETASSFGATPLQIVFKVLIPEALPGLVLALTLAVVSLLGYSAMVGAVGGGGLGDLGIRYG 180 Query: 181 YQRFMPEMMLAVVVVLIALVQTVQTAGD 208 YQRFMPEMMLAVVVVLIALVQTVQT GD Sbjct: 181 YQRFMPEMMLAVVVVLIALVQTVQTVGD 208 >ref|YP_001206261.1| D-and L-methionine ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL78036.1| D-and L-methionine ABC transporter, permease protein [Bradyrhizobium sp. ORS 278] Length = 221 Score = 320 bits (821), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 193/209 (92%), Positives = 200/209 (95%) Query: 1 MSRELINLIVQATGESLFMVSVAALVATALGLPLGVFLATSRKGELFAAPSANGVLGVIV 60 MS ELINLIVQATGESLFMVS AALVATALGLPLGVFLATSR GELFAAP+ N LGV+V Sbjct: 1 MSPELINLIVQATGESLFMVSTAALVATALGLPLGVFLATSRTGELFAAPAVNAALGVVV 60 Query: 61 NAARSTPFIILVVAIIPFTRLIAGTSIGSGAAIVPLTIAATPFIARLVEAAIREVDAGLI 120 NA RSTPFIILVVAIIPFTRL+AGTSIGSGAAIVPLT+AATPFIARLVEAAIREVDAGLI Sbjct: 61 NATRSTPFIILVVAIIPFTRLVAGTSIGSGAAIVPLTVAATPFIARLVEAAIREVDAGLI 120 Query: 121 ETASSFGASPLQIVFKVLIPEALPGVVLALTLAVVSLLGYSAMVGAVVGGGLGDLGIRYG 180 ETASSFGA+PLQIVFKVLIPEALPG+VLALTLAVVSLLGYSAMVGAV GGGLGDLGIRYG Sbjct: 121 ETASSFGATPLQIVFKVLIPEALPGLVLALTLAVVSLLGYSAMVGAVGGGGLGDLGIRYG 180 Query: 181 YQRFMPEMMLAVVVVLIALVQTVQTAGDY 209 YQRFMPEMMLAVVVVLIALVQTVQT GD+ Sbjct: 181 YQRFMPEMMLAVVVVLIALVQTVQTIGDH 209 >ref|ZP_08663495.1| binding-protein-dependent transport systems inner membrane component [Paracoccus sp. TRP] Length = 224 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 154/222 (69%), Positives = 189/222 (85%), Gaps = 1/222 (0%) Query: 1 MSRELINLIVQATGESLFMVSVAALVATALGLPLGVFLATSRKGELFAAPSANGVLGVIV 60 MS LI ++ QAT ++L+MV+ + L+ T +GLPLGVFLATSR+GEL +AP N +LG+IV Sbjct: 1 MSANLIPILWQATLQTLYMVTTSTLIGTLIGLPLGVFLATSRRGELLSAPWLNSLLGLIV 60 Query: 61 NAARSTPFIILVVAIIPFTRLIAGTSIGSGAAIVPLTIAATPFIARLVEAAIREVDAGLI 120 NAARSTPFIILVVAI P T+LIAGTSIG+ A+IVPLTIAA PFIARL+E AIRE+DAGLI Sbjct: 61 NAARSTPFIILVVAITPLTQLIAGTSIGTTASIVPLTIAAAPFIARLIETAIREIDAGLI 120 Query: 121 ETASSFGASPLQIVFKVLIPEALPGVVLALTLAVVSLLGYSAMVGAVVGGGLGDLGIRYG 180 E A + GA+P+QI+ KVLIPEALPG++L LTLAVVSL+GYSAMVGAV G GLGDLGIRYG Sbjct: 121 EAARAMGATPVQIIRKVLIPEALPGIILGLTLAVVSLIGYSAMVGAVGGKGLGDLGIRYG 180 Query: 181 YQRFMPEMMLAVVVVLIALVQTVQTAGDYLARRVNRRL-RHR 221 YQRFMPE+ML VV++LI LVQ VQ+ G+++A R ++R R+R Sbjct: 181 YQRFMPEVMLTVVIILIVLVQLVQSVGEWIASRFDKRAPRNR 222 >ref|NP_771142.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110] dbj|BAC49767.1| blr4502 [Bradyrhizobium japonicum USDA 110] Length = 221 Score = 301 bits (770), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 195/221 (88%), Positives = 207/221 (93%) Query: 1 MSRELINLIVQATGESLFMVSVAALVATALGLPLGVFLATSRKGELFAAPSANGVLGVIV 60 MS ELINLI+QAT ESL+MV +AAL+ TA GLPLGVFLATSRKGELFAAP N VLG++V Sbjct: 1 MSPELINLIIQATFESLYMVGIAALLGTAFGLPLGVFLATSRKGELFAAPVVNRVLGIVV 60 Query: 61 NAARSTPFIILVVAIIPFTRLIAGTSIGSGAAIVPLTIAATPFIARLVEAAIREVDAGLI 120 NA RSTPFIILVVAIIPFTRL+AGTSIGS AAIVPLTIA+TPFIARLVEAAIREVD GLI Sbjct: 61 NATRSTPFIILVVAIIPFTRLVAGTSIGSTAAIVPLTIASTPFIARLVEAAIREVDGGLI 120 Query: 121 ETASSFGASPLQIVFKVLIPEALPGVVLALTLAVVSLLGYSAMVGAVVGGGLGDLGIRYG 180 ETASSFGASP+QIVFKVLIPEALPG++LALTLAVVSLLGYSAMVGAV GGGLGDLGIRYG Sbjct: 121 ETASSFGASPMQIVFKVLIPEALPGLLLALTLAVVSLLGYSAMVGAVGGGGLGDLGIRYG 180 Query: 181 YQRFMPEMMLAVVVVLIALVQTVQTAGDYLARRVNRRLRHR 221 YQRFMPEMMLAVVVVLIALVQ VQ+AGDYLA RVNRRLRHR Sbjct: 181 YQRFMPEMMLAVVVVLIALVQLVQSAGDYLAGRVNRRLRHR 221 >ref|YP_001771265.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] gb|ACA18831.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] Length = 221 Score = 300 bits (769), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 173/220 (78%), Positives = 194/220 (88%) Query: 1 MSRELINLIVQATGESLFMVSVAALVATALGLPLGVFLATSRKGELFAAPSANGVLGVIV 60 MS EL+ L++ ATG++L MV+VAA + T GLPLGVFLATS +GELFAAP AN LG++V Sbjct: 1 MSPELLRLLLVATGDTLRMVAVAAGLGTLFGLPLGVFLATSGRGELFAAPLANRGLGLVV 60 Query: 61 NAARSTPFIILVVAIIPFTRLIAGTSIGSGAAIVPLTIAATPFIARLVEAAIREVDAGLI 120 NA RSTPFIILVVAIIPFTRL+AGTSIG+GAA VPLT+AATPFIARLVE AIREVDAGL+ Sbjct: 61 NATRSTPFIILVVAIIPFTRLVAGTSIGTGAATVPLTVAATPFIARLVEGAIREVDAGLV 120 Query: 121 ETASSFGASPLQIVFKVLIPEALPGVVLALTLAVVSLLGYSAMVGAVVGGGLGDLGIRYG 180 E A +FGASPLQIV KVLIPEALPG+VL LTLAVVSL+G+SAMVGAV GGGLGDLGIRYG Sbjct: 121 EAARAFGASPLQIVLKVLIPEALPGIVLGLTLAVVSLIGFSAMVGAVGGGGLGDLGIRYG 180 Query: 181 YQRFMPEMMLAVVVVLIALVQTVQTAGDYLARRVNRRLRH 220 YQRFMPEMM+AVV VLI LVQ VQT GD LARR+N+RLR Sbjct: 181 YQRFMPEMMVAVVAVLILLVQAVQTVGDRLARRLNKRLRQ 220