BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0031.p         (108 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_578981.1| hypothetical protein Nham_3811 [Nitrobacter ham...   101   4e-20

>ref|YP_578981.1| hypothetical protein Nham_3811 [Nitrobacter hamburgensis X14]
 gb|ABE64521.1| hypothetical protein Nham_3811 [Nitrobacter hamburgensis X14]
          Length = 124

 Score =  101 bits (251), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 62/90 (68%), Gaps = 2/90 (2%)

Query: 1  MIAMRGLIACAVIALSIAA--AAAQQRPLRYGSTGGAYFDGRDDDRDFRSNGYFPGNFAA 58
          MI      A A++   +A   A  Q R LRYG+T G YFDGRDD+RDF +NG+FPGNFA 
Sbjct: 1  MIRCWVATAAAIVLTCLAGQPAFTQDRLLRYGNTSGGYFDGRDDNRDFPTNGFFPGNFAT 60

Query: 59 DPFSAGFGPPGLFGSTPWHSARPYPSQVVF 88
          DP +A  G  GLFGSTP HSA PYPSQV+F
Sbjct: 61 DPSAAWIGAAGLFGSTPSHSATPYPSQVIF 90