BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0030.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_578980.1| hypothetical protein Nham_3810 [Nitrobacter ham...   117   4e-25
ref|YP_488301.1| hypothetical protein RPB_4707 [Rhodopseudomonas...    91   6e-17
ref|YP_571534.1| hypothetical protein RPD_4417 [Rhodopseudomonas...    88   4e-16
ref|YP_579162.1| hypothetical protein Nham_4036 [Nitrobacter ham...    87   9e-16
ref|ZP_08628107.1| hypothetical protein CSIRO_1177 [Bradyrhizobi...    87   1e-15

>ref|YP_578980.1| hypothetical protein Nham_3810 [Nitrobacter hamburgensis X14]
 gb|ABE64520.1| hypothetical protein Nham_3810 [Nitrobacter hamburgensis X14]
          Length = 110

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/93 (59%), Positives = 72/93 (77%)

Query: 8   LVVLVIALGVLTDASRAQQRPPNSVPLAFGMSAAKASQSLGVPLNYVRGTPGNELFVALP 67
           + +L +A G  T A   Q  P +S+PL+FGM A + SQ+LGVPLNYVRG PG+EL++A+P
Sbjct: 9   IALLALAGGAFTPAVGQQTLPNSSIPLSFGMDAGQVSQALGVPLNYVRGRPGDELYLAIP 68

Query: 68  NVRGSVLSRRSDGLYLQFGKGRLIAWKGDWGTL 100
           NV+GS L+ RSDGLYLQF +G+L  WKGDWGT+
Sbjct: 69  NVKGSALASRSDGLYLQFRRGQLKGWKGDWGTI 101


>ref|YP_488301.1| hypothetical protein RPB_4707 [Rhodopseudomonas palustris HaA2]
 gb|ABD09390.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 138

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 12/108 (11%)

Query: 3   RFATLLVVLVIALGVLTDASRAQQ------RPP------NSVPLAFGMSAAKASQSLGVP 50
           R A  ++V++IA   L   + AQQ       PP      N+ PLAFGM A +A ++LG+P
Sbjct: 25  RRAMAVLVMLIAASSLARPASAQQPAAVIVAPPFIATLSNTTPLAFGMDALQAERALGMP 84

Query: 51  LNYVRGTPGNELFVALPNVRGSVLSRRSDGLYLQFGKGRLIAWKGDWG 98
           LNYV G PG+E+F+A+    GS    R D LYLQF +GRL  WKGDWG
Sbjct: 85  LNYVSGRPGDEIFLAIRTHGGSGFFNRRDRLYLQFRRGRLTGWKGDWG 132


>ref|YP_571534.1| hypothetical protein RPD_4417 [Rhodopseudomonas palustris BisB5]
 gb|ABE41633.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 133

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 63/110 (57%), Gaps = 12/110 (10%)

Query: 1   MQRFATLLVVLVIALGVLTDASRAQQRPP------------NSVPLAFGMSAAKASQSLG 48
           ++R A + + L++A  +      AQQ  P            N+ PLAFGM A +A ++LG
Sbjct: 18  LRRMALVRLALIVAASLSAAPVSAQQFAPAIVTPPFTATLSNTAPLAFGMDAFEAERALG 77

Query: 49  VPLNYVRGTPGNELFVALPNVRGSVLSRRSDGLYLQFGKGRLIAWKGDWG 98
           +PLNYV G PG+E+F+ +    GS    R D LYLQF  GRL  WKGDWG
Sbjct: 78  MPLNYVSGRPGDEVFLVIRTAGGSGFFNRRDRLYLQFRHGRLTGWKGDWG 127


>ref|YP_579162.1| hypothetical protein Nham_4036 [Nitrobacter hamburgensis X14]
 gb|ABE64702.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 119

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 49/69 (71%)

Query: 30  NSVPLAFGMSAAKASQSLGVPLNYVRGTPGNELFVALPNVRGSVLSRRSDGLYLQFGKGR 89
           N+ PLAFGM  A A+ +LGVPL+Y+ G PGNE+F+A  +  GS    R D LYLQF +GR
Sbjct: 45  NNTPLAFGMDEATAAGALGVPLDYISGRPGNEVFLAFRSYGGSGFFNRKDRLYLQFRRGR 104

Query: 90  LIAWKGDWG 98
           L  WKGDWG
Sbjct: 105 LTGWKGDWG 113


>ref|ZP_08628107.1| hypothetical protein CSIRO_1177 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP09016.1| hypothetical protein CSIRO_1177 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 108

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 58/99 (58%), Gaps = 9/99 (9%)

Query: 7   LLVVLVIALGVLTDASRAQQRPP--------NSVPLAFGMSAAKASQSLGVPLNYVRGTP 58
           L    ++AL V     RA Q PP        N  PL FGMSA  A+++LG PL+YV G P
Sbjct: 4   LAFTTLVALAVAHTPVRAGQLPPSPFTTTLSNHTPLVFGMSADDAAEALGQPLSYVSGNP 63

Query: 59  GNELFVALPNVRGSVLSRRSDGLYLQFGKGRLIAWKGDW 97
           GNE+FV + NV G+  S R D LYLQF  GRL  WK DW
Sbjct: 64  GNEIFVVIRNV-GARWSFRDDPLYLQFRGGRLTGWKADW 101