BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0027.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207555.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhi... 441 e-122 ref|NP_773251.1| amidase [Bradyrhizobium japonicum USDA 110] >gi... 441 e-122 ref|YP_001242013.1| 1 N-acetylmuramoyl-L-alanine amidase [Bradyr... 440 e-121 ref|YP_576555.1| negative regulator of AmpC, AmpD [Nitrobacter h... 422 e-116 ref|ZP_01045949.1| N-acetylmuramoyl-L-alanine amidase, family 2 ... 420 e-116 >ref|YP_001207555.1| N-acetylmuramoyl-L-alanine amidase [Bradyrhizobium sp. ORS 278] emb|CAL79338.1| putative 1:N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan binding domain [Bradyrhizobium sp. ORS 278] Length = 283 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/254 (80%), Positives = 226/254 (88%) Query: 1 VADAKTFTPDSSIASDVIPSANFGDRANGRQPDMIVLHYTGMPDVEGAITQLCTAGTEVS 60 V+D FTPDSSIASDVIPSANFG+R GRQPDMI+LHYTGMPD EGAI +LCTAGTEVS Sbjct: 22 VSDLPMFTPDSSIASDVIPSANFGERKGGRQPDMIILHYTGMPDAEGAINKLCTAGTEVS 81 Query: 61 AHYIVLEDGRIVQCVPESKRAWHAGVSAWAGDDDINSCSIGVEIVNRGHDWGYPDFPLRQ 120 AHYIVLEDGRIVQCVPE+ RAWHAG+S+W G++DINSCSIG+EIVNRGHDWGYPDFP RQ Sbjct: 82 AHYIVLEDGRIVQCVPEALRAWHAGLSSWGGEEDINSCSIGIEIVNRGHDWGYPDFPPRQ 141 Query: 121 IAAVIALCRGIMLRRKIVSHRVLGHSDVAPARKKDPGEKFPWHSLANSGVGHWVQPAPIV 180 IAAVIALCRGIMLRR + +HRVLGHSDVAP+RKKDPGEKFPWHSLANSGVGHWVQPA I Sbjct: 142 IAAVIALCRGIMLRRNVPAHRVLGHSDVAPSRKKDPGEKFPWHSLANSGVGHWVQPAAIT 201 Query: 181 RGDALQLGAISDSVSNMQAAFRRYGYNIPTNGKFDGPTMEVVTAFQRHFRPERIDGIADR 240 +G+ L+LG+I D V +Q A +YGY +P GKFDG TMEVVTAFQRHFRPER+DGIADR Sbjct: 202 KGETLKLGSIGDDVKGLQKALAKYGYGVPITGKFDGLTMEVVTAFQRHFRPERVDGIADR 261 Query: 241 STMATLHALLESLP 254 ST+ TLHALL SLP Sbjct: 262 STLWTLHALLTSLP 275 >ref|NP_773251.1| amidase [Bradyrhizobium japonicum USDA 110] dbj|BAC51876.1| amidase [Bradyrhizobium japonicum USDA 110] Length = 286 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/263 (77%), Positives = 232/263 (88%), Gaps = 2/263 (0%) Query: 2 ADAKTFTPDSSIASDVIPSANFGDRANGRQPDMIVLHYTGMPDVEGAITQLCTAGTEVSA 61 A+ +TF PDSSI SD+IPS N G+R+ GRQPDMIVLHYTGMPDVEGA+ +LCTAGTEVSA Sbjct: 26 ANMRTFEPDSSIVSDIIPSPNHGERSKGRQPDMIVLHYTGMPDVEGALARLCTAGTEVSA 85 Query: 62 HYIVLEDGRIVQCVPESKRAWHAGVSAWAGDDDINSCSIGVEIVNRGHDWGYPDFPLRQI 121 HY+VLEDGRIVQCVPE++RAWHAGVS+WAG+DD+NSCSIG+EIVNRGHDWGYP+FPLRQI Sbjct: 86 HYVVLEDGRIVQCVPEARRAWHAGVSSWAGEDDVNSCSIGIEIVNRGHDWGYPEFPLRQI 145 Query: 122 AAVIALCRGIMLRRKIVSHRVLGHSDVAPARKKDPGEKFPWHSLANSGVGHWVQPAPIVR 181 AAVIALCRGIMLRRK+ +HRVLGHSDVAPARKKDPGEKFPWHSLANSGVGHWV P P+VR Sbjct: 146 AAVIALCRGIMLRRKVPAHRVLGHSDVAPARKKDPGEKFPWHSLANSGVGHWVTPTPVVR 205 Query: 182 GDALQLGAISDSVSNMQAAFRRYGYNIPTNGKFDGPTMEVVTAFQRHFRPERIDGIADRS 241 G++L LG ISD V ++Q A RYGY +P GK+D TMEVVTAFQRHFRP R+DG+AD S Sbjct: 206 GESLMLGTISDEVLSLQQALARYGYGVPLTGKYDAATMEVVTAFQRHFRPARLDGVADHS 265 Query: 242 TMATLHALLESLPPDAATAVASS 264 T++TL ALL SLP TAVAS Sbjct: 266 TLSTLQALLASLP--DGTAVASK 286 >ref|YP_001242013.1| 1 N-acetylmuramoyl-L-alanine amidase [Bradyrhizobium sp. BTAi1] gb|ABQ38107.1| putative 1 N-acetylmuramoyl-L-alanine amidase (family 2) with peptidoglycan binding domain [Bradyrhizobium sp. BTAi1] Length = 283 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 204/253 (80%), Positives = 227/253 (89%) Query: 2 ADAKTFTPDSSIASDVIPSANFGDRANGRQPDMIVLHYTGMPDVEGAITQLCTAGTEVSA 61 A+ FTPDSSIASDVIPSANFG+R GRQPDM++LHYTGMPDVEGAIT+LCTAG+EVSA Sbjct: 23 AELPLFTPDSSIASDVIPSANFGERKGGRQPDMVILHYTGMPDVEGAITKLCTAGSEVSA 82 Query: 62 HYIVLEDGRIVQCVPESKRAWHAGVSAWAGDDDINSCSIGVEIVNRGHDWGYPDFPLRQI 121 HYIVLEDGRIVQCVPE+ RAWHAG+S+W GD+DINSCSIGVEIVNRGHDWGYPDFP RQI Sbjct: 83 HYIVLEDGRIVQCVPEAMRAWHAGLSSWGGDEDINSCSIGVEIVNRGHDWGYPDFPPRQI 142 Query: 122 AAVIALCRGIMLRRKIVSHRVLGHSDVAPARKKDPGEKFPWHSLANSGVGHWVQPAPIVR 181 AAVIALCRGIMLRR + +HR+LGHSDVAP+RKKDPGEKFPWHSLANSGVGHWVQPA I + Sbjct: 143 AAVIALCRGIMLRRNVPAHRILGHSDVAPSRKKDPGEKFPWHSLANSGVGHWVQPAAITK 202 Query: 182 GDALQLGAISDSVSNMQAAFRRYGYNIPTNGKFDGPTMEVVTAFQRHFRPERIDGIADRS 241 G+ L+LG+I D V +Q A +YGY +P GKFDG TM+VVTAFQRHFRPERIDGIADRS Sbjct: 203 GETLKLGSIGDDVRGLQKALAKYGYGVPITGKFDGITMDVVTAFQRHFRPERIDGIADRS 262 Query: 242 TMATLHALLESLP 254 T+ TLHALL SLP Sbjct: 263 TLWTLHALLTSLP 275 >ref|YP_576555.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14] gb|ABE62095.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14] Length = 289 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 195/257 (75%), Positives = 225/257 (87%), Gaps = 1/257 (0%) Query: 1 VADAKTFTPDSSIASDVIPSANFGDRANGRQPDMIVLHYTGMPDVEGAITQLCTAGTEVS 60 +A TF PDSS+ SD +PS NFGDRA GRQPDMIVLHYTGMPDVEGA+ +LCT+GT+VS Sbjct: 21 LAGMSTFVPDSSVVSDTVPSLNFGDRAKGRQPDMIVLHYTGMPDVEGALARLCTSGTDVS 80 Query: 61 AHYIVLEDGRIVQCVPESKRAWHAGVSAWAGDDDINSCSIGVEIVNRGHDWGYPDFPLRQ 120 AHY+VLEDGRIVQCV E+KRAWHAGV++WAG++DINSCSIG+EIVNRGHDWGYPDFPLRQ Sbjct: 81 AHYVVLEDGRIVQCVQEAKRAWHAGVASWAGEEDINSCSIGIEIVNRGHDWGYPDFPLRQ 140 Query: 121 IAAVIALCRGIMLRRKIVSHRVLGHSDVAPARKKDPGEKFPWHSLANSGVGHWVQPAPIV 180 +AAVIALCRGI+LRR I +HRV+GHSDVAPARKKDPGEKFPWHSLA+SGVGHWV+P+PIV Sbjct: 141 VAAVIALCRGIILRRDIPAHRVVGHSDVAPARKKDPGEKFPWHSLADSGVGHWVRPSPIV 200 Query: 181 RGDALQLGAISDSVSNMQAAFRRYGYNIPTNGKFDGPTMEVVTAFQRHFRPERIDGIADR 240 RGD L+ G+ D V +Q + RYGY I +G FD PTMEVVTAFQRHFRPER+DG+AD+ Sbjct: 201 RGDVLKTGSEGDDVRALQQSLARYGYGIKASGTFDTPTMEVVTAFQRHFRPERVDGVADQ 260 Query: 241 STMATLHALLESLP-PD 256 ST+ TL L ESLP PD Sbjct: 261 STLNTLRTLHESLPDPD 277 >ref|ZP_01045949.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter sp. Nb-311A] gb|EAQ36033.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Nitrobacter sp. Nb-311A] Length = 285 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 192/255 (75%), Positives = 221/255 (86%) Query: 6 TFTPDSSIASDVIPSANFGDRANGRQPDMIVLHYTGMPDVEGAITQLCTAGTEVSAHYIV 65 TF PDSS+ SD +PS NFGDRA GRQPDMIVLHYTGMPDVEGA+ +LCT+GTEVSAHY+V Sbjct: 26 TFVPDSSLVSDTVPSLNFGDRAKGRQPDMIVLHYTGMPDVEGALARLCTSGTEVSAHYVV 85 Query: 66 LEDGRIVQCVPESKRAWHAGVSAWAGDDDINSCSIGVEIVNRGHDWGYPDFPLRQIAAVI 125 LEDGR+VQCV E+KRAWHAGV++WAG++DINSCSIG+EIVNRGHDWGYP FPLRQIAAVI Sbjct: 86 LEDGRVVQCVQEAKRAWHAGVASWAGEEDINSCSIGIEIVNRGHDWGYPAFPLRQIAAVI 145 Query: 126 ALCRGIMLRRKIVSHRVLGHSDVAPARKKDPGEKFPWHSLANSGVGHWVQPAPIVRGDAL 185 ALCRGI+ RR I +HR++GHSDVAPARKKDPGEKFPWHSLA+SGVGHWV+PAPIV GD L Sbjct: 146 ALCRGIIHRRNIPAHRIVGHSDVAPARKKDPGEKFPWHSLADSGVGHWVRPAPIVAGDVL 205 Query: 186 QLGAISDSVSNMQAAFRRYGYNIPTNGKFDGPTMEVVTAFQRHFRPERIDGIADRSTMAT 245 + G+ D+V +Q + RYGY I GKFD T EVVTAFQRHFRPE++DG+AD+ST+ T Sbjct: 206 KTGSEGDNVQALQQSLARYGYGIKATGKFDTATTEVVTAFQRHFRPEKVDGLADQSTLTT 265 Query: 246 LHALLESLPPDAATA 260 L ALLESLP A A Sbjct: 266 LQALLESLPAQTAEA 280