BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0024.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773252.1| hypothetical protein bll6612 [Bradyrhizobium ja... 334 8e-90 ref|YP_001242014.1| putative RNA polymerase sigma factor [Bradyr... 305 3e-81 ref|YP_001207556.1| putative RNA polymerase sigma factor [Bradyr... 301 6e-80 ref|ZP_03132457.1| putative RNA polymerase, sigma-24 subunit, EC... 236 3e-60 ref|YP_004295240.1| putative RNA polymerase, sigma-24 subunit, E... 231 5e-59 >ref|NP_773252.1| hypothetical protein bll6612 [Bradyrhizobium japonicum USDA 110] dbj|BAC51877.1| bll6612 [Bradyrhizobium japonicum USDA 110] Length = 412 Score = 334 bits (856), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 163/210 (77%), Positives = 184/210 (87%), Gaps = 1/210 (0%) Query: 18 VMTPSQIEKVFRDEAGRALATLIRLVGDFDLAEDALQDAFAVALQRWPIGEFPSNPRAWL 77 +++P+ I ++FRDEAGR LATLIRLVGDFDLAEDALQDAFAVAL+RW GE P NPRAWL Sbjct: 1 MISPADIARIFRDEAGRVLATLIRLVGDFDLAEDALQDAFAVALERWSAGEVPDNPRAWL 60 Query: 78 VNVGRNKAIDRVRRAATFRGKQQELTHQILLDAESSPEPADATLDDDMLRLIFTCCHPSF 137 VNVGRNKAIDR+RR A FRGKQQ H++ L+A++ EP ATLDDDMLRLIFTCCHP+F Sbjct: 61 VNVGRNKAIDRIRRQAVFRGKQQAFVHELELNAQAPDEPP-ATLDDDMLRLIFTCCHPAF 119 Query: 138 AAEVQVALTLRTVCGLTTVEVARAFLVSEDAMAQRLLRAKQKIKLAGIPYEVPEREALEP 197 A EVQVALTLRTVCGL+T +VARAFLV E+AMAQRL+RAKQKI+LAGIPYEVPER+AL Sbjct: 120 AQEVQVALTLRTVCGLSTAQVARAFLVGEEAMAQRLVRAKQKIRLAGIPYEVPERDALAQ 179 Query: 198 RLTGVLAVIYLVFTEGYAATAGEDLMRPIL 227 RL GVLAVIYLVFTEGY AT+G DLMRP L Sbjct: 180 RLDGVLAVIYLVFTEGYVATSGADLMRPDL 209 >ref|YP_001242014.1| putative RNA polymerase sigma factor [Bradyrhizobium sp. BTAi1] gb|ABQ38108.1| RNA polymerase, sigma subunit, ECF family [Bradyrhizobium sp. BTAi1] Length = 418 Score = 305 bits (782), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 157/209 (75%), Positives = 171/209 (81%), Gaps = 5/209 (2%) Query: 19 MTPSQIEKVFRDEAGRALATLIRLVGDFDLAEDALQDAFAVALQRWPIGEFPSNPRAWLV 78 MTP I++VFRDEAGRALATLIRLVGDF+LAEDALQDAFA AL W P+NPRAWLV Sbjct: 4 MTPEAIDQVFRDEAGRALATLIRLVGDFELAEDALQDAFAAALLNWRGAGAPANPRAWLV 63 Query: 79 NVGRNKAIDRVRRAATFRGKQQELTHQILLDA---ESSPEPADATLDDDMLRLIFTCCHP 135 NV RNKAIDR+RR FR K+ E+ H I DA E++ P D LDDDMLRLIFTCCHP Sbjct: 64 NVARNKAIDRIRRQRNFRAKEAEIVHAIERDAVSDEAAATPND--LDDDMLRLIFTCCHP 121 Query: 136 SFAAEVQVALTLRTVCGLTTVEVARAFLVSEDAMAQRLLRAKQKIKLAGIPYEVPEREAL 195 SFA EVQVALTLRTVCGLTT EVARAFL SE+AMAQRLLRAKQKI+LAGIPYEVP R AL Sbjct: 122 SFAPEVQVALTLRTVCGLTTAEVARAFLASEEAMAQRLLRAKQKIRLAGIPYEVPGRHAL 181 Query: 196 EPRLTGVLAVIYLVFTEGYAATAGEDLMR 224 E RL GVL VIYLVFTEGY AT+G +L+R Sbjct: 182 EERLRGVLTVIYLVFTEGYLATSGPELIR 210 >ref|YP_001207556.1| putative RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278] emb|CAL79339.1| putative RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278] Length = 417 Score = 301 bits (771), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 151/207 (72%), Positives = 166/207 (80%) Query: 18 VMTPSQIEKVFRDEAGRALATLIRLVGDFDLAEDALQDAFAVALQRWPIGEFPSNPRAWL 77 +MTP IE VFRDEAGRALATLIRLVGDFDLAEDALQDAFA AL W E P+NPRAWL Sbjct: 3 LMTPEAIESVFRDEAGRALATLIRLVGDFDLAEDALQDAFAAALLSWRGREVPANPRAWL 62 Query: 78 VNVGRNKAIDRVRRAATFRGKQQELTHQILLDAESSPEPADATLDDDMLRLIFTCCHPSF 137 VNV RNK IDR RR +FR K+ E+ H I DA S LDDDMLRLIFTCCHP+F Sbjct: 63 VNVARNKVIDRFRRQRSFRDKEAEIIHAIERDAASDASDVPPDLDDDMLRLIFTCCHPAF 122 Query: 138 AAEVQVALTLRTVCGLTTVEVARAFLVSEDAMAQRLLRAKQKIKLAGIPYEVPEREALEP 197 A EVQVALTLRTVCGLTT EVARAF+ E+AMAQRL+RAKQKI+LAGIPY+VP R+ LE Sbjct: 123 APEVQVALTLRTVCGLTTAEVARAFVTGEEAMAQRLVRAKQKIRLAGIPYDVPARDTLEE 182 Query: 198 RLTGVLAVIYLVFTEGYAATAGEDLMR 224 RL GVL VIYLVFTEGY AT+G +L+R Sbjct: 183 RLRGVLTVIYLVFTEGYLATSGPELIR 209 >ref|ZP_03132457.1| putative RNA polymerase, sigma-24 subunit, ECF subfamily [Chthoniobacter flavus Ellin428] gb|EDY16815.1| putative RNA polymerase, sigma-24 subunit, ECF subfamily [Chthoniobacter flavus Ellin428] Length = 415 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 122/207 (58%), Positives = 151/207 (72%), Gaps = 3/207 (1%) Query: 22 SQIEKVFRDEAGRALATLIRLVGDFDLAEDALQDAFAVALQRWPIGEFPSNPRAWLVNVG 81 +Q++ V+R E+GR LATLIRL+GDFDLAEDA+QDAF AL RW P NPRAWLV+ G Sbjct: 11 AQLDSVYRAESGRILATLIRLLGDFDLAEDAMQDAFTAALDRWLKEGIPENPRAWLVSTG 70 Query: 82 RNKAIDRVRRAATFRGKQQELTHQILLDAESSPEPA-DATLDDDMLRLIFTCCHPSFAAE 140 R KAID +RR A F Q+++ +I +A+SS PA D ++ DD LRLIFTCCHP+ A E Sbjct: 71 RFKAIDALRRRARFDASQEKIAEEI--EAQSSSGPAEDESVPDDRLRLIFTCCHPALAPE 128 Query: 141 VQVALTLRTVCGLTTVEVARAFLVSEDAMAQRLLRAKQKIKLAGIPYEVPEREALEPRLT 200 +VALTLR VCGLTT E+ARAFL + +AQR++RAK KI+ A IPY+VP L RL Sbjct: 129 ARVALTLREVCGLTTEEIARAFLTTPPTLAQRIVRAKSKIREARIPYQVPSPAELAERLG 188 Query: 201 GVLAVIYLVFTEGYAATAGEDLMRPIL 227 VL VIYLVF EGY+A++G L RP L Sbjct: 189 AVLHVIYLVFNEGYSASSGATLTRPDL 215 >ref|YP_004295240.1| putative RNA polymerase, sigma-24 subunit, ECF subfamily [Nitrosomonas sp. AL212] gb|ADZ27078.1| putative RNA polymerase, sigma-24 subunit, ECF subfamily [Nitrosomonas sp. AL212] Length = 417 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 116/215 (53%), Positives = 151/215 (70%), Gaps = 1/215 (0%) Query: 15 RSIVMTPSQIEKVFRDEAGRALATLIRLVGDFDLAEDALQDAFAVALQRWPIGEFPSNPR 74 +S+ P +E+++R+E+ R LATLIRL+GD D AE+AL DAF +AL++WP P NP+ Sbjct: 3 KSVQNYPGTLEQIYRNESRRVLATLIRLLGDIDQAEEALHDAFKIALEQWPQQGIPENPK 62 Query: 75 AWLVNVGRNKAIDRVRRAATFRGKQQELTHQILLDAESSPEPADATLDDDMLRLIFTCCH 134 AWLV+VGR KAID+ RR A F + H L + D +L+DD LRLIFTCCH Sbjct: 63 AWLVSVGRFKAIDKFRRNARFDSIDEIPAHLATL-IFPVDDNLDGSLEDDQLRLIFTCCH 121 Query: 135 PSFAAEVQVALTLRTVCGLTTVEVARAFLVSEDAMAQRLLRAKQKIKLAGIPYEVPEREA 194 PS ++E Q+ALTLR +CGL+T E+A AFL++ +AQR++RAK KI+ A IPYEVPERE Sbjct: 122 PSLSSEAQIALTLRKICGLSTEEIAHAFLITPKTVAQRIVRAKAKIRDARIPYEVPEREH 181 Query: 195 LEPRLTGVLAVIYLVFTEGYAATAGEDLMRPILRA 229 L RL VL VIYLVF E Y+A+ G +LMR L A Sbjct: 182 LPDRLDSVLKVIYLVFNESYSASFGIELMRHDLSA 216