BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0020.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08629013.1| transcriptional regulator [Bradyrhizobiaceae ...   188   2e-46
ref|YP_002287271.1| transcriptional regulator [Oligotropha carbo...   179   2e-43
ref|YP_316901.1| transcriptional regulator [Nitrobacter winograd...   178   2e-43
ref|ZP_07026273.1| putative PAS/PAC sensor protein [Afipia sp. 1...   176   8e-43
ref|YP_575718.1| putative PAS/PAC sensor protein [Nitrobacter ha...   176   8e-43

>ref|ZP_08629013.1| transcriptional regulator [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP08372.1| transcriptional regulator [Bradyrhizobiaceae bacterium SG-6C]
          Length = 147

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/144 (66%), Positives = 108/144 (75%)

Query: 1   MDIAAEVGDALLKGASDAIVATDAEGRITLWNPGAVRLFGFSAEEAIGQSLDLIIPENLR 60
           M   A + +ALL  ASDAI+ATD  G +T WNPGAVR+FGFS +EAIGQSLD IIPENLR
Sbjct: 2   MSAPAGLAEALLASASDAIIATDRGGVVTYWNPGAVRIFGFSPDEAIGQSLDFIIPENLR 61

Query: 61  ARHWAGFRHTMATGTSRYGQGDLLSVPALTRHGTRISVEFTIAMLHDAAHKVAGTVAVMR 120
           ARHW G+RHTMATGTSRYG GDLLS PALT+ G RISVEFTI ML D      GTVAV+R
Sbjct: 62  ARHWDGYRHTMATGTSRYGAGDLLSAPALTKGGKRISVEFTIVMLRDERGLPDGTVAVLR 121

Query: 121 DVTRRFEELKELRRRAAQQAGTSS 144
           DVT+ F E   LRR  A+   T+S
Sbjct: 122 DVTKGFAEKLALRRELAELQQTAS 145


>ref|YP_002287271.1| transcriptional regulator [Oligotropha carboxidovorans OM5]
 ref|YP_004631231.1| Pas/Pac domain-containing protein [Oligotropha carboxidovorans OM5]
 gb|ACI91406.1| transcriptional regulator [Oligotropha carboxidovorans OM5]
 gb|AEI01415.1| Pas/Pac domain protein [Oligotropha carboxidovorans OM4]
 gb|AEI04990.1| Pas/Pac domain protein [Oligotropha carboxidovorans OM5]
          Length = 147

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 103/137 (75%)

Query: 1   MDIAAEVGDALLKGASDAIVATDAEGRITLWNPGAVRLFGFSAEEAIGQSLDLIIPENLR 60
           MD    +G+A+L   SDAIVATD  G IT WNPGA R+FGF+  EA+GQSLD+IIPENLR
Sbjct: 1   MDYRTALGEAILASESDAIVATDKPGVITFWNPGATRIFGFTEAEALGQSLDIIIPENLR 60

Query: 61  ARHWAGFRHTMATGTSRYGQGDLLSVPALTRHGTRISVEFTIAMLHDAAHKVAGTVAVMR 120
            RHW G+   M TG SRY  GDLL+VPALT+ GTRISVEFT+ +  D+  K  GT A+MR
Sbjct: 61  KRHWDGYNEVMETGQSRYSHGDLLAVPALTKAGTRISVEFTMVIQLDSNGKPVGTAAIMR 120

Query: 121 DVTRRFEELKELRRRAA 137
           DVT++FEE ++LR++ A
Sbjct: 121 DVTKKFEENRDLRKKLA 137


>ref|YP_316901.1| transcriptional regulator [Nitrobacter winogradskyi Nb-255]
 gb|ABA03549.1| transcriptional regulator [Nitrobacter winogradskyi Nb-255]
          Length = 141

 Score =  178 bits (452), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 108/137 (78%), Gaps = 1/137 (0%)

Query: 1   MDIAAEVGDALLKGASDAIVATDAEGRITLWNPGAVRLFGFSAEEAIGQSLDLIIPENLR 60
           MD A+ +  ALL  ++DAIVATD  G ITLWNPGAVR+FG SA+EA GQSLDLIIPEN R
Sbjct: 1   MD-ASAIAAALLDSSADAIVATDRNGTITLWNPGAVRIFGHSADEATGQSLDLIIPENQR 59

Query: 61  ARHWAGFRHTMATGTSRYGQGDLLSVPALTRHGTRISVEFTIAMLHDAAHKVAGTVAVMR 120
           ARHWAG+R  M TG SRY  GD+L+VPAL + G RIS+EFTI  L DA+ ++ G  +V+R
Sbjct: 60  ARHWAGYREVMLTGRSRYSDGDVLAVPALHKDGRRISLEFTIVPLTDASGRINGLASVLR 119

Query: 121 DVTRRFEELKELRRRAA 137
           DVT RFEE+++LRR+AA
Sbjct: 120 DVTARFEEIRQLRRKAA 136


>ref|ZP_07026273.1| putative PAS/PAC sensor protein [Afipia sp. 1NLS2]
 gb|EFI53415.1| putative PAS/PAC sensor protein [Afipia sp. 1NLS2]
          Length = 147

 Score =  176 bits (447), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 85/142 (59%), Positives = 105/142 (73%), Gaps = 2/142 (1%)

Query: 1   MDIAAEVGDALLKGASDAIVATDAEGRITLWNPGAVRLFGFSAEEAIGQSLDLIIPENLR 60
           MD    +GDA+L   SDAI+AT  +G IT WNPGA R+FGF+  EA+GQSLD+IIPENLR
Sbjct: 1   MDFRTALGDAILSSESDAIIATGKDGLITFWNPGATRIFGFAENEAVGQSLDIIIPENLR 60

Query: 61  ARHWAGFRHTMATGTSRYGQGDLLSVPALTRHGTRISVEFTIAMLHDAAHKVAGTVAVMR 120
           ARHW G+   M +G SRY  GDLL+VPAL + GTRISVEFT+ +L     K AGT AV+R
Sbjct: 61  ARHWEGYDKVMESGQSRYSHGDLLAVPALIKAGTRISVEFTMVVLPGPDGKPAGTAAVLR 120

Query: 121 DVTRRFEELKELRRR--AAQQA 140
           DVT++FEE + LR++  AAQ A
Sbjct: 121 DVTKKFEENRALRKKLAAAQNA 142


>ref|YP_575718.1| putative PAS/PAC sensor protein [Nitrobacter hamburgensis X14]
 gb|ABE61258.1| transcriptional regulator [Nitrobacter hamburgensis X14]
          Length = 141

 Score =  176 bits (447), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 108/137 (78%), Gaps = 1/137 (0%)

Query: 1   MDIAAEVGDALLKGASDAIVATDAEGRITLWNPGAVRLFGFSAEEAIGQSLDLIIPENLR 60
           MD A+ V  ALL  ++DAI+A D +G IT WNPGAVR+FGF+A+EA G+SLDLIIPE  R
Sbjct: 1   MD-ASSVAVALLHSSADAIIAADRDGNITFWNPGAVRIFGFTADEATGRSLDLIIPEKQR 59

Query: 61  ARHWAGFRHTMATGTSRYGQGDLLSVPALTRHGTRISVEFTIAMLHDAAHKVAGTVAVMR 120
           ARHWAG+R  M TG SRY  GD+L+VPAL + G RIS+EFTI  + DAA ++ G V+V+R
Sbjct: 60  ARHWAGYREVMRTGQSRYSGGDILAVPALRKDGRRISLEFTIVPVKDAAGRMTGLVSVLR 119

Query: 121 DVTRRFEELKELRRRAA 137
           DVT RFEE++ELRR+AA
Sbjct: 120 DVTARFEEIRELRRKAA 136