BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0017.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07027602.1| Citrate transporter [Afipia sp. 1NLS2] >gi|29... 646 0.0 ref|NP_774603.1| hypothetical protein bll7963 [Bradyrhizobium ja... 629 e-178 ref|YP_001415738.1| citrate transporter [Xanthobacter autotrophi... 584 e-164 ref|YP_002362854.1| Citrate transporter [Methylocella silvestris... 580 e-163 ref|YP_001524221.1| H+/gluconate symporter [Azorhizobium caulino... 572 e-161 >ref|ZP_07027602.1| Citrate transporter [Afipia sp. 1NLS2] gb|EFI51358.1| Citrate transporter [Afipia sp. 1NLS2] Length = 483 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/468 (73%), Positives = 388/468 (82%), Gaps = 29/468 (6%) Query: 16 LAFRGWSVLLLAPLCALVAAAFGGEPLLANWTQTFMGSASEFLAQFFPIFLLGAVFGKLM 75 LAFRGWSVLLLAP+ ALVAA FGGEPLLA+WTQTFMGSA+ F+AQFFPIFLLGAVFGKLM Sbjct: 16 LAFRGWSVLLLAPIAALVAALFGGEPLLAHWTQTFMGSAATFIAQFFPIFLLGAVFGKLM 75 Query: 76 DDSGAVAAVAGFISRCLGERRIILAVVLAGALVTYGGVSLFVAFFVIVPMAQSLFRSAGI 135 DDSGAV++VA FI+R LGE+R+ILAVVLAGA VTYGGVSLFVAFFVIVPMAQSLF A I Sbjct: 76 DDSGAVSSVADFITRHLGEKRVILAVVLAGAFVTYGGVSLFVAFFVIVPMAQSLFVKASI 135 Query: 136 PRRLVPAAVILGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPGLGVVASIIMLGVGLW 195 PRRL+PAAVILGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPGLG+VAS++MLG GLW Sbjct: 136 PRRLLPAAVILGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPGLGLVASLVMLGTGLW 195 Query: 196 WLLRAEKAAHRAKEGYGDEPPVPADAADDELLRERATTAREFDPAELRHGHHSSAAVPIF 255 WL RAE+ A + EGYG + P P +A +EL+RERAT EFDPAE+ HG S A P+ Sbjct: 196 WLGRAERIARLSGEGYGTDAPSPGEAMANELVRERATATGEFDPAEIAHGQRSQMAAPVL 255 Query: 256 NAILPLIVVVAVNLVMSLVVLPRLDFSFLAEQRWGNTSLAAVAGVWSVVVALAGAIVTVI 315 +A PL+VVV VNL+MSLV+LPR+D +FLAE RWG TSLAAVAGVWSV+ ALA AIVT I Sbjct: 256 SAATPLVVVVVVNLLMSLVILPRIDTTFLAEARWGGTSLAAVAGVWSVITALAAAIVTAI 315 Query: 316 LCNWTRLPALRRTMDAGANASVLPALSVASLVGFGAVIASLPAFGVVRDWVLQIEGGPLV 375 CNW RLP+LR+T+DAGANASVLPALSVASLVGFGAV+A+LPAF VRDWVL +EGGPLV Sbjct: 316 ACNWRRLPSLRKTIDAGANASVLPALSVASLVGFGAVVAALPAFATVRDWVLDMEGGPLV 375 Query: 376 SLAVATNILAALTGSASGG-----------------------------TVIGSGTLDILP 406 SLA+ATN+LAALTGSASGG VIGSGTLDILP Sbjct: 376 SLAIATNLLAALTGSASGGLTIALDALGNIYMGIAVREGINPALLHRIAVIGSGTLDILP 435 Query: 407 HNGAVVSLLAICGLKHRESYLDIVMVGIASSVIALVAVIAIGTAFGSF 454 HNGAVVSLLAICG+ HRESY DIVMVGIA+S++AL+AVI + T FGSF Sbjct: 436 HNGAVVSLLAICGVTHRESYFDIVMVGIATSLLALIAVIVLSTIFGSF 483 >ref|NP_774603.1| hypothetical protein bll7963 [Bradyrhizobium japonicum USDA 110] dbj|BAC53228.1| bll7963 [Bradyrhizobium japonicum USDA 110] Length = 484 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 362/469 (77%), Positives = 391/469 (83%), Gaps = 30/469 (6%) Query: 16 LAFRGWSVLLLAPLCALVAAAFGGEPLLANWTQTFMGSASEFLAQFFPIFLLGAVFGKLM 75 AFRGWSVLLLAP ALVAA FGGEPLLAN TQ FM +A+ FLAQFFPIFLLGAVFGKLM Sbjct: 16 FAFRGWSVLLLAPFAALVAALFGGEPLLANLTQVFMVNAAGFLAQFFPIFLLGAVFGKLM 75 Query: 76 DDSGAVAAVAGFISRCLGERRIILAVVLAGALVTYGGVSLFVAFFVIVPMAQSLFRSAGI 135 DDSGAV +VAGF++ LGERR+ILAVVLAGALVTYGGVSLFVAFFVIVPMA+SLFR+A I Sbjct: 76 DDSGAVTSVAGFMAERLGERRVILAVVLAGALVTYGGVSLFVAFFVIVPMARSLFRAASI 135 Query: 136 PRRLVPAAVILGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPGLGVVASIIMLGVGLW 195 PRRL+PAA++LGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPGLG+ AS+IMLG GLW Sbjct: 136 PRRLIPAAIVLGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPGLGITASLIMLGAGLW 195 Query: 196 WLLRAEKAAHRAKEGYGDEPP-VPADAADDELLRERATTAREFDPAELRHGHHSSAAVPI 254 WL RAE AA RA EGYGD+ + AA DEL+RERATTAREFDPAEL+HGH S P+ Sbjct: 196 WLHRAEAAARRAGEGYGDDADGLIEQAAADELVRERATTAREFDPAELQHGHRSDRPSPV 255 Query: 255 FNAILPLIVVVAVNLVMSLVVLPRLDFSFLAEQRWGNTSLAAVAGVWSVVVALAGAIVTV 314 NAI PL+VVV VNLVMSLVVLPRLD S+LAEQR+G TSLAAVAGVWSV VALA AIVT Sbjct: 256 LNAIAPLVVVVTVNLVMSLVVLPRLDVSYLAEQRFGETSLAAVAGVWSVAVALAAAIVTT 315 Query: 315 ILCNWTRLPALRRTMDAGANASVLPALSVASLVGFGAVIASLPAFGVVRDWVLQIEGGPL 374 I N RLPALRRTMDAGANASVLPA SVASLVGFGAV+ASLPAF +VRDWVL IEGGPL Sbjct: 316 IALNRARLPALRRTMDAGANASVLPAFSVASLVGFGAVVASLPAFTIVRDWVLAIEGGPL 375 Query: 375 VSLAVATNILAALTGSASGG-----------------------------TVIGSGTLDIL 405 VSLAVATNILAALTGSASGG VIGSGTLDIL Sbjct: 376 VSLAVATNILAALTGSASGGLTIALEALGPTYVELAARTGIELSLMHRVAVIGSGTLDIL 435 Query: 406 PHNGAVVSLLAICGLKHRESYLDIVMVGIASSVIALVAVIAIGTAFGSF 454 PHNGAVVSLLAICGL HR+SY DIVMVGI +S++ALVAVIA+G+AFGSF Sbjct: 436 PHNGAVVSLLAICGLTHRDSYFDIVMVGIVTSLLALVAVIALGSAFGSF 484 >ref|YP_001415738.1| citrate transporter [Xanthobacter autotrophicus Py2] gb|ABS66081.1| Citrate transporter [Xanthobacter autotrophicus Py2] Length = 487 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 308/487 (63%), Positives = 376/487 (77%), Gaps = 33/487 (6%) Query: 1 MGLLGILVGLGLLVCLAFRGWSVLLLAPLCALVAAAFGGEPLLANWTQTFMGSASEFLAQ 60 MGL+GILVGL +L+ LAFRG S+L+LAP+ L+AAAF GEPLLA+WTQTFM +A++F+AQ Sbjct: 1 MGLIGILVGLAVLIFLAFRGSSILILAPIAGLIAAAFSGEPLLASWTQTFMRNAADFVAQ 60 Query: 61 FFPIFLLGAVFGKLMDDSGAVAAVAGFISRCLGERRIILAVVLAGALVTYGGVSLFVAFF 120 FFP+FLLGA+FGKLM+DSG+V ++A F+++ LG +R ILAVVLAGA+VTYGGVSLFVAFF Sbjct: 61 FFPLFLLGALFGKLMEDSGSVTSIANFMTQKLGAQRAILAVVLAGAIVTYGGVSLFVAFF 120 Query: 121 VIVPMAQSLFRSAGIPRRLVPAAVILGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPG 180 V+ PM +LFRS+G+PRRL+PAA+ LGTSTFTMSA+PGTPSIQNAIPMPFFGTTPFAAPG Sbjct: 121 VLAPMGVALFRSSGVPRRLMPAAIALGTSTFTMSAMPGTPSIQNAIPMPFFGTTPFAAPG 180 Query: 181 LGVVASIIMLGVGLWWLLRAEKAAHRAKEGYGDEPPVPAD----AADDELLRERATTARE 236 LG++AS++MLG G+WWL E AA EG+G P + AADD L+RERATTA Sbjct: 181 LGIIASLVMLGFGMWWLKLRENAARAKGEGFGALIAAPDESAELAADDPLVRERATTAGS 240 Query: 237 FDPAELRHGHHSSAAVPIFNAILPLIVVVAVNLVMSLVVLPRLDFSFLAEQRWGNTSLAA 296 FDP+E+ ++ PI A LP+IVV+ VNL+MS +LPR+D SFLA +WGN+SL+A Sbjct: 241 FDPSEIHSSDEATRQPPILLAALPIIVVIVVNLLMSFAILPRMDTSFLATDQWGNSSLSA 300 Query: 297 VAGVWSVVVALAGAIVTVILCNWTRLPALRRTMDAGANASVLPALSVASLVGFGAVIASL 356 V GVWSV+VAL AI+ VI N+ +P LR TM AGANASVLP LSVASLVGFGA++ASL Sbjct: 301 VGGVWSVIVALTAAIIAVIAINFRSVPELRATMTAGANASVLPILSVASLVGFGAIVASL 360 Query: 357 PAFGVVRDWVLQIEGGPLVSLAVATNILAALTGSASGG---------------------- 394 PAF VR+WVL I+GGPLVSLAVATNILAALTGSASGG Sbjct: 361 PAFMEVRNWVLSIQGGPLVSLAVATNILAALTGSASGGLTIALDALGPTYMKIAAEIGMD 420 Query: 395 -------TVIGSGTLDILPHNGAVVSLLAICGLKHRESYLDIVMVGIASSVIALVAVIAI 447 VIGSGTLD LPHNGAVV+LL++CG+ H+E YLDIVM + ++IAL+ VI + Sbjct: 421 PALMHRVAVIGSGTLDSLPHNGAVVTLLSVCGVTHKEGYLDIVMAAVVGALIALMVVIGL 480 Query: 448 GTAFGSF 454 GT GSF Sbjct: 481 GTLVGSF 487 >ref|YP_002362854.1| Citrate transporter [Methylocella silvestris BL2] gb|ACK51492.1| Citrate transporter [Methylocella silvestris BL2] Length = 484 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 328/484 (67%), Positives = 386/484 (79%), Gaps = 30/484 (6%) Query: 1 MGLLGILVGLGLLVCLAFRGWSVLLLAPLCALVAAAFGGEPLLANWTQTFMGSASEFLAQ 60 MGLLGI +GL LL+ AFRGWSVLLLAP+ ALVAA F GEPLLA+WTQTFMGSA++F+AQ Sbjct: 1 MGLLGIFLGLALLIFFAFRGWSVLLLAPIAALVAAVFSGEPLLASWTQTFMGSAADFVAQ 60 Query: 61 FFPIFLLGAVFGKLMDDSGAVAAVAGFISRCLGERRIILAVVLAGALVTYGGVSLFVAFF 120 FFP+FLLGA+FGKLMDDSG+V A+A +++ LG R I +VVLAGA+VTYGGVSLFVAFF Sbjct: 61 FFPLFLLGALFGKLMDDSGSVTAIAQYMTTKLGPERAIFSVVLAGAIVTYGGVSLFVAFF 120 Query: 121 VIVPMAQSLFRSAGIPRRLVPAAVILGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPG 180 V+ PMA +LFR+AGIPRRL+PAA+ LGTSTFTMSA+PGTP+IQNAIPMPFFGTTPFAAPG Sbjct: 121 VLAPMALALFRTAGIPRRLMPAAIALGTSTFTMSAMPGTPAIQNAIPMPFFGTTPFAAPG 180 Query: 181 LGVVASIIMLGVGLWWLLRAEKAAHRAKEGYGDE-PPVPADAADDELLRERATTAREFDP 239 LG++AS IMLG GLWWL RAE A RA EG+G + DAA+DE++RERATTAREFDP Sbjct: 181 LGIMASAIMLGFGLWWLKRAEARARRAGEGFGPQDAAAGNDAANDEIIRERATTAREFDP 240 Query: 240 AELRHGHHSSAAVPIFNAILPLIVVVAVNLVMSLVVLPRLDFSFLAEQRWGNTSLAAVAG 299 AE++ G H+++A PI A LPL+VVV VNL+MS V+LPRLD SFL++ RWG TSL+AV G Sbjct: 241 AEIQKGEHAASAPPIVLAALPLVVVVVVNLLMSFVILPRLDVSFLSQDRWGPTSLSAVGG 300 Query: 300 VWSVVVALAGAIVTVILCNWTRLPALRRTMDAGANASVLPALSVASLVGFGAVIASLPAF 359 VWSV+VAL AI+TV+ N+ P LR TMDAG NASVLP SVASLVGFGAV+A+ PAF Sbjct: 301 VWSVIVALTAAILTVLALNFRAAPNLRATMDAGVNASVLPIFSVASLVGFGAVVAATPAF 360 Query: 360 GVVRDWVLQIEGGPLVSLAVATNILAALTGSASGG------------------------- 394 VR+WVL IEGGPLVSLAVATNILAALTGSASGG Sbjct: 361 AAVREWVLSIEGGPLVSLAVATNILAALTGSASGGLTIALDALGPTYMKLAADIGLNPEL 420 Query: 395 ----TVIGSGTLDILPHNGAVVSLLAICGLKHRESYLDIVMVGIASSVIALVAVIAIGTA 450 VIGSGTLD LPHNGAVV++LA+CG H+ESYLDIVMV + S+++ALVAVI +G+ Sbjct: 421 LHRVAVIGSGTLDSLPHNGAVVTMLAVCGTTHKESYLDIVMVAVVSAILALVAVIGVGSL 480 Query: 451 FGSF 454 GSF Sbjct: 481 VGSF 484 >ref|YP_001524221.1| H+/gluconate symporter [Azorhizobium caulinodans ORS 571] dbj|BAF87303.1| putative H+/gluconate symporter [Azorhizobium caulinodans ORS 571] Length = 484 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 315/466 (67%), Positives = 370/466 (79%), Gaps = 30/466 (6%) Query: 19 RGWSVLLLAPLCALVAAAFGGEPLLANWTQTFMGSASEFLAQFFPIFLLGAVFGKLMDDS 78 RGWS+LLLAP ALVAA F GEPLLA+WTQTFM +A+ F+AQFFP+FLLGA+FGKLMDDS Sbjct: 19 RGWSILLLAPAAALVAAGFSGEPLLAHWTQTFMSNAATFIAQFFPLFLLGALFGKLMDDS 78 Query: 79 GAVAAVAGFISRCLGERRIILAVVLAGALVTYGGVSLFVAFFVIVPMAQSLFRSAGIPRR 138 G+V +A ++R LGE+R ILAVVLAGA+VTYGGVSLFVAFFV+ PMAQ+LFR+AGIPRR Sbjct: 79 GSVTVIADEMTRRLGEKRAILAVVLAGAIVTYGGVSLFVAFFVLAPMAQALFRAAGIPRR 138 Query: 139 LVPAAVILGTSTFTMSALPGTPSIQNAIPMPFFGTTPFAAPGLGVVASIIMLGVGLWWLL 198 L+PAA+ LGTSTFTMSA+PGTP+IQNAIPMPFFGTTPFAAPGLG++AS+IMLG G+WWL Sbjct: 139 LMPAAIALGTSTFTMSAMPGTPAIQNAIPMPFFGTTPFAAPGLGLIASLIMLGFGMWWLS 198 Query: 199 RAEKAAHRAKEGYGDEPPVPADA-ADDELLRERATTAREFDPAELRHGHHSSAAVPIFNA 257 RAE+ A EG+GD P+ + ADD +RERAT++ EFD AE+RHG H+ P+ A Sbjct: 199 RAERIARARGEGFGDATPLDTEQVADDPFIRERATSSHEFDTAEIRHGAHAPKGPPVIIA 258 Query: 258 ILPLIVVVAVNLVMSLVVLPRLDFSFLAEQRWGNTSLAAVAGVWSVVVALAGAIVTVILC 317 LPLIVVVAVNLVMS+ VLPRLD SFLAE RWG T+L+AV GVWSV ALA AI+T++ Sbjct: 259 ALPLIVVVAVNLVMSMAVLPRLDVSFLAEARWGATTLSAVGGVWSVATALAAAILTLVAL 318 Query: 318 NWTRLPALRRTMDAGANASVLPALSVASLVGFGAVIASLPAFGVVRDWVLQIEGGPLVSL 377 N+ RLP LR +MDAGANA+VLPA SVASLVGFGAV+A+LPAF +VR WVL IEGGPLVSL Sbjct: 319 NFRRLPNLRSSMDAGANAAVLPAFSVASLVGFGAVVAALPAFELVRTWVLGIEGGPLVSL 378 Query: 378 AVATNILAALTGSASGG-----------------------------TVIGSGTLDILPHN 408 AVATNILAALTGSASGG VIGSGTLD LPHN Sbjct: 379 AVATNILAALTGSASGGLTIALDALGPAYMKIAATTGLDPALMHRVAVIGSGTLDSLPHN 438 Query: 409 GAVVSLLAICGLKHRESYLDIVMVGIASSVIALVAVIAIGTAFGSF 454 GAVV+LLA+CG H +SYLDIVMV + S+++AL AVI +G+ GSF Sbjct: 439 GAVVTLLAVCGSTHAKSYLDIVMVAVVSALLALAAVIVLGSTIGSF 484