BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0193.0015.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774777.1| sigma-70 subunit [Bradyrhizobium japonicum USDA...    45   0.003

>ref|NP_774777.1| sigma-70 subunit [Bradyrhizobium japonicum USDA 110]
 dbj|BAC53402.1| bsr8137 [Bradyrhizobium japonicum USDA 110]
          Length = 65

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MDLQKIMAKARDIARSSGTITTEQLNGMCPN-NMEPEDIAALFAALRTEGIRLKDDE 56
          M+ +KI+  A  + R  G +T EQLN + P   +EP+DI A+  AL  EGI L DD+
Sbjct: 7  MERRKIIQAAIGLGRRKGFVTFEQLNQLLPAATIEPKDIEAIMQALSDEGINLIDDD 63