BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0193.0002.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202685.1| hypothetical protein BRADO0502 [Bradyrhizobi... 459 e-127 ref|NP_767532.1| hypothetical protein bll0892 [Bradyrhizobium ja... 454 e-125 ref|YP_001243429.1| hypothetical protein BBta_7680 [Bradyrhizobi... 447 e-124 ref|YP_317178.1| HWE histidine kinase [Nitrobacter winogradskyi ... 345 8e-93 ref|ZP_01044589.1| HWE histidine kinase [Nitrobacter sp. Nb-311A... 325 8e-87 >ref|YP_001202685.1| hypothetical protein BRADO0502 [Bradyrhizobium sp. ORS 278] emb|CAL74442.1| conserved hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 322 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 213/318 (66%), Positives = 257/318 (80%) Query: 1 MAKWIDDFRACWRGDAQPSVRLAVAFAVLCLVLATAARFGLAQIRPDVFFTPYFPAVFFA 60 M + I+D + WRG+ QPS+ + +FA CL++ATA R+GLA +RPDVFFTPY PAVFFA Sbjct: 3 MTRLIEDIKQVWRGEQQPSLVWSCSFAAACLLIATAIRYGLAHLRPDVFFTPYMPAVFFA 62 Query: 61 TALGGFRIGIATALASGLLGVVLNFSGAHADPARFALLMIFWVVCGIAIWGVEHYRSLVA 120 TA+GG +G+ATA+ LG+ L+F+ D AR AL+ ++ VV G+ IWGV HYR L A Sbjct: 63 TAMGGSGVGLATAILGAGLGLALDFNHGPVDGARLALMAMYLVVAGLVIWGVNHYRGLAA 122 Query: 121 QQREVSKRLIEEEQYRKVVVDELQHRLKNKSSTIHAVLHQALQDRPDVWQRIDHRIRALS 180 +QRE+++RLIEEEQYRK++VDEL HRLKNK+STIHAVLHQ L D+P VW RID RIRAL+ Sbjct: 123 KQREIARRLIEEEQYRKLLVDELHHRLKNKTSTIHAVLHQVLHDQPQVWGRIDQRIRALA 182 Query: 181 ATDDLIARVDGYGCGIKDLLRSELGPYGHVRFNLNGEQLFLPAKLAVSLALIFHELATNA 240 DDLIAR DG GC +KDLL SELGPYGHVRF LNG+ LFLPAKLAVSLALIFHELATNA Sbjct: 183 TADDLIARADGQGCDLKDLLMSELGPYGHVRFELNGDSLFLPAKLAVSLALIFHELATNA 242 Query: 241 GKYGAFSSPRGFLQVSWTVDDGRLNVIWDETEGPVVEAIGEAGFGTKLLKSALRPFDGKT 300 GKYGAF+SPRGFLQVSWT+ D RL + WDE EGP + IG+ GFGTKLLK+AL FDG+T Sbjct: 243 GKYGAFASPRGFLQVSWTMQDDRLKLTWDEAEGPALGEIGKPGFGTKLLKAALSSFDGRT 302 Query: 301 EISYLKTGVHCTMQCKLP 318 E +YL TG+HCTMQC++P Sbjct: 303 ETTYLATGIHCTMQCRVP 320 >ref|NP_767532.1| hypothetical protein bll0892 [Bradyrhizobium japonicum USDA 110] dbj|BAC46157.1| bll0892 [Bradyrhizobium japonicum USDA 110] Length = 323 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 225/318 (70%), Positives = 271/318 (85%) Query: 1 MAKWIDDFRACWRGDAQPSVRLAVAFAVLCLVLATAARFGLAQIRPDVFFTPYFPAVFFA 60 M K ID+FR W+G A PS+ L++AFAV CL++AT AR+GLAQ+RPDV+FTPYFPAVFFA Sbjct: 1 MEKLIDEFRKGWQGAAPPSLGLSIAFAVACLLVATLARWGLAQVRPDVYFTPYFPAVFFA 60 Query: 61 TALGGFRIGIATALASGLLGVVLNFSGAHADPARFALLMIFWVVCGIAIWGVEHYRSLVA 120 A GGFRIGI TA+ G+LGVV+NFS A AD ARFALL ++W V + IWGVEHYR+++A Sbjct: 61 AAFGGFRIGIVTAIVGGVLGVVVNFSDALADRARFALLALYWAVSALTIWGVEHYRTMLA 120 Query: 121 QQREVSKRLIEEEQYRKVVVDELQHRLKNKSSTIHAVLHQALQDRPDVWQRIDHRIRALS 180 +QR +SKRLIEEE YRK++VDELQHRLKNK ST+HAV+HQ L D+P VW R+D R+R+L+ Sbjct: 121 EQRRISKRLIEEEDYRKLLVDELQHRLKNKLSTVHAVIHQVLHDQPQVWARVDPRLRSLA 180 Query: 181 ATDDLIARVDGYGCGIKDLLRSELGPYGHVRFNLNGEQLFLPAKLAVSLALIFHELATNA 240 ATDDLI+R+D GC I+DLL SELGPYGHVRF LNG++LFLPAKLAV+L+L+FHELATNA Sbjct: 181 ATDDLISRIDKAGCDIRDLLISELGPYGHVRFTLNGDRLFLPAKLAVTLSLMFHELATNA 240 Query: 241 GKYGAFSSPRGFLQVSWTVDDGRLNVIWDETEGPVVEAIGEAGFGTKLLKSALRPFDGKT 300 GKYGAFS+PRG LQVSWTV D RL + WDETEGP V+ + E GFGTKLLKSAL FDG+T Sbjct: 241 GKYGAFSAPRGLLQVSWTVSDDRLTITWDETEGPTVDKVSEPGFGTKLLKSALSAFDGRT 300 Query: 301 EISYLKTGVHCTMQCKLP 318 EISYLKTG+HC MQC++P Sbjct: 301 EISYLKTGLHCIMQCRIP 318 >ref|YP_001243429.1| hypothetical protein BBta_7680 [Bradyrhizobium sp. BTAi1] gb|ABQ39523.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 320 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 207/318 (65%), Positives = 251/318 (78%) Query: 1 MAKWIDDFRACWRGDAQPSVRLAVAFAVLCLVLATAARFGLAQIRPDVFFTPYFPAVFFA 60 M + I D WRG+ QPS+ + AFA +CL +AT RFG+A +RPDVFFTPY PAVFFA Sbjct: 1 MNRLISDIGRIWRGELQPSLAWSSAFAAMCLAMATMVRFGMAHLRPDVFFTPYIPAVFFA 60 Query: 61 TALGGFRIGIATALASGLLGVVLNFSGAHADPARFALLMIFWVVCGIAIWGVEHYRSLVA 120 TA+GG +G+ TA+ LG++L F A D AR AL+ ++ V + IWGV HYR L A Sbjct: 61 TAMGGSAVGLVTAIIGAALGLLLEFGSATVDVARVALMTMYLTVAALVIWGVNHYRDLAA 120 Query: 121 QQREVSKRLIEEEQYRKVVVDELQHRLKNKSSTIHAVLHQALQDRPDVWQRIDHRIRALS 180 +QRE++KRL +EEQYRK++VDEL HRLKNK+STIHAVLHQ L D+P VW ID RIRAL+ Sbjct: 121 KQREIAKRLTDEEQYRKLLVDELHHRLKNKTSTIHAVLHQVLHDQPQVWSSIDKRIRALA 180 Query: 181 ATDDLIARVDGYGCGIKDLLRSELGPYGHVRFNLNGEQLFLPAKLAVSLALIFHELATNA 240 DDLIARVD GC +KDLL SELGPYGHVRF LNG+ LFLPAKLAVSLALIFHELATNA Sbjct: 181 GADDLIARVDAQGCDLKDLLMSELGPYGHVRFELNGDPLFLPAKLAVSLALIFHELATNA 240 Query: 241 GKYGAFSSPRGFLQVSWTVDDGRLNVIWDETEGPVVEAIGEAGFGTKLLKSALRPFDGKT 300 KYGAF+SPRGFLQVSWT+ + RL + WDETEGP ++ +G+ GFGTKLLK+AL PF+GKT Sbjct: 241 AKYGAFASPRGFLQVSWTLHEDRLRLSWDETEGPPIDQVGKPGFGTKLLKAALSPFEGKT 300 Query: 301 EISYLKTGVHCTMQCKLP 318 E ++LKTG+HCTMQ ++P Sbjct: 301 ETTFLKTGIHCTMQFRVP 318 >ref|YP_317178.1| HWE histidine kinase [Nitrobacter winogradskyi Nb-255] gb|ABA03826.1| HWE histidine kinase [Nitrobacter winogradskyi Nb-255] Length = 337 Score = 345 bits (884), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 173/316 (54%), Positives = 226/316 (71%) Query: 2 AKWIDDFRACWRGDAQPSVRLAVAFAVLCLVLATAARFGLAQIRPDVFFTPYFPAVFFAT 61 A+WI++FR WRG ++P L A +CL+LATA RFG++ + DV + Y P VF A Sbjct: 7 ARWIEEFRRGWRGVSEPPAALGFGLAAVCLMLATAFRFGISLLHADVPYGAYLPGVFAAA 66 Query: 62 ALGGFRIGIATALASGLLGVVLNFSGAHADPARFALLMIFWVVCGIAIWGVEHYRSLVAQ 121 A GG R GIA A+ LG++LNF A A L+ +++ V + I GV +RSLV Sbjct: 67 AFGGERAGIAAAIGGAALGLMLNFGEAPQAVAAAILMAVYFTVAALIILGVRRHRSLVVH 126 Query: 122 QREVSKRLIEEEQYRKVVVDELQHRLKNKSSTIHAVLHQALQDRPDVWQRIDHRIRALSA 181 RE++ L +E+ YR++VV+EL+HRLKNK +T+HAV QAL + P+ +ID I AL+ Sbjct: 127 HRELTTELEKEQHYRELVVEELRHRLKNKLATVHAVTKQALHNYPEARTKIDGCINALAT 186 Query: 182 TDDLIARVDGYGCGIKDLLRSELGPYGHVRFNLNGEQLFLPAKLAVSLALIFHELATNAG 241 TDDLIAR D GC I +LLRSELGPYGHVRF LNG+ LFLPAKLAVSLAL+FHELATNA Sbjct: 187 TDDLIARTDDRGCDILELLRSELGPYGHVRFTLNGDSLFLPAKLAVSLALMFHELATNAA 246 Query: 242 KYGAFSSPRGFLQVSWTVDDGRLNVIWDETEGPVVEAIGEAGFGTKLLKSALRPFDGKTE 301 KYGAFS+P G L VSWTV +G L+++WDE+ GP++ A G+ GFGT+LL + LR F GK E Sbjct: 247 KYGAFSTPHGLLNVSWTVTNGTLSIVWDESGGPMITAQGKPGFGTQLLNAGLRGFGGKAE 306 Query: 302 ISYLKTGVHCTMQCKL 317 I++L TG+HC MQC++ Sbjct: 307 IAFLGTGLHCIMQCRI 322 >ref|ZP_01044589.1| HWE histidine kinase [Nitrobacter sp. Nb-311A] gb|EAQ37370.1| HWE histidine kinase [Nitrobacter sp. Nb-311A] Length = 342 Score = 325 bits (832), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 173/317 (54%), Positives = 229/317 (72%) Query: 1 MAKWIDDFRACWRGDAQPSVRLAVAFAVLCLVLATAARFGLAQIRPDVFFTPYFPAVFFA 60 MAKWI++FR W+G ++P L A +CL+LAT RFG++ + DV ++ Y PAVF A Sbjct: 1 MAKWIEEFRRGWQGISEPPAVLGFGLAAVCLMLATVFRFGISHLHADVPYSAYLPAVFAA 60 Query: 61 TALGGFRIGIATALASGLLGVVLNFSGAHADPARFALLMIFWVVCGIAIWGVEHYRSLVA 120 A GG R GIA A+ LG++L+F A A L+ +++VV + I GV +RSLVA Sbjct: 61 AAFGGERAGIAAAIGGAALGLLLDFGEAPRVMAALILMAVYFVVAALIILGVRRHRSLVA 120 Query: 121 QQREVSKRLIEEEQYRKVVVDELQHRLKNKSSTIHAVLHQALQDRPDVWQRIDHRIRALS 180 RE++ L +E++YR+++V+EL+HRLKNK +TIHAV QAL D P ++D AL+ Sbjct: 121 HHRELATELEKEQRYRELMVEELRHRLKNKLATIHAVTRQALHDYPAARTKMDGCFGALA 180 Query: 181 ATDDLIARVDGYGCGIKDLLRSELGPYGHVRFNLNGEQLFLPAKLAVSLALIFHELATNA 240 TDDLIAR + GC + +LLRSELGPYGHVRF LNG LFLPAKLAVSLAL+FHELATNA Sbjct: 181 TTDDLIARTNERGCDLIELLRSELGPYGHVRFTLNGAPLFLPAKLAVSLALMFHELATNA 240 Query: 241 GKYGAFSSPRGFLQVSWTVDDGRLNVIWDETEGPVVEAIGEAGFGTKLLKSALRPFDGKT 300 KYGAFS+ G LQVSWTV +G L+++WDE+ GP++ A G+ GFGT+LL + LR FDGK Sbjct: 241 AKYGAFSTSHGLLQVSWTVTNGMLSIVWDESGGPIITAQGKPGFGTQLLNAGLRAFDGKA 300 Query: 301 EISYLKTGVHCTMQCKL 317 EI++L TG+HC MQC++ Sbjct: 301 EIAFLGTGLHCIMQCRI 317