BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0119.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202369.1| endonuclease III DNA-(apurinic or apyrimidin... 421 e-116 ref|YP_575523.1| endonuclease III [Nitrobacter hamburgensis X14]... 407 e-111 ref|NP_767329.1| endonuclease III [Bradyrhizobium japonicum USDA... 403 e-110 ref|YP_530233.1| endonuclease III [Rhodopseudomonas palustris Bi... 401 e-110 ref|YP_001236404.1| DNA-(apurinic or apyrimidinic site) lyase / ... 400 e-109 >ref|YP_001202369.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase [Bradyrhizobium sp. ORS 278] emb|CAL74119.1| endonuclease III DNA-(apurinic or apyrimidinic site) lyase [Bradyrhizobium sp. ORS 278] Length = 277 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 213/279 (76%), Positives = 227/279 (81%), Gaps = 22/279 (7%) Query: 9 MAKIIRSQRASTSSVRS---------------APKKKAAKAATLLP----KPGAKKAAKK 49 MAKI R QRA + VR+ + K KAA + P K G+ K KK Sbjct: 1 MAKITRPQRAKPAPVRTPARKAAKAAPGAASKSASKTVKKAAKISPAAKLKAGSVKPVKK 60 Query: 50 AAKRTAKPKPWTSEEVYEAFDRFRKANPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKA 109 A K T KPWT E+ EAF RF +ANPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKA Sbjct: 61 AFKAT---KPWTPMEIREAFSRFAQANPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKA 117 Query: 110 TRALFAVADTPEKMLELGEDRVRDYIKTIGLYRNKARNVIALSQKLIAEFGGEVPRTRAE 169 TR LFAVADTP+KML LGED VRDYIKT+GL+R KA+NVIALSQKLIAEFGGEVPRTRAE Sbjct: 118 TRPLFAVADTPQKMLALGEDTVRDYIKTVGLFRTKAKNVIALSQKLIAEFGGEVPRTRAE 177 Query: 170 IESLPGAGRKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPTE 229 +ESLPGAGRKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIP E Sbjct: 178 LESLPGAGRKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPAE 237 Query: 230 FMLHAHHWLILHGRYTCLARGPRCDVCLINDLCRWPEKT 268 FMLHAHHWLILHGRYTCLAR PRC++CLI DLCRWPEKT Sbjct: 238 FMLHAHHWLILHGRYTCLARKPRCELCLIKDLCRWPEKT 276 >ref|YP_575523.1| endonuclease III [Nitrobacter hamburgensis X14] gb|ABE61063.1| DNA-(apurinic or apyrimidinic site) lyase [Nitrobacter hamburgensis X14] Length = 262 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/254 (77%), Positives = 220/254 (86%), Gaps = 2/254 (0%) Query: 16 QRASTSSVRSAPKKKAAKAATLLPKPGAKKAAKKAAKRTAKPKPWTSEEVYEAFDRFRKA 75 +RA+T +A KA A P A+++A+ +A T +PWT E+ EAF RFR A Sbjct: 11 KRAATPEAGAA--SKAILPAAKRPAKPARRSARGSAAPTPPLRPWTVAEIREAFVRFRNA 68 Query: 76 NPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATRALFAVADTPEKMLELGEDRVRDYI 135 NPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATRALFAVADTP +ML LGE++VRD+I Sbjct: 69 NPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATRALFAVADTPARMLALGEEKVRDHI 128 Query: 136 KTIGLYRNKARNVIALSQKLIAEFGGEVPRTRAEIESLPGAGRKTANVVLNMAFGEHTMA 195 KTIGLYRNKARN+IALS+KL+A+F GEVPR+RA IESLPGAGRKTANVVLNMAFGEHTMA Sbjct: 129 KTIGLYRNKARNIIALSEKLLADFNGEVPRSRAGIESLPGAGRKTANVVLNMAFGEHTMA 188 Query: 196 VDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPTEFMLHAHHWLILHGRYTCLARGPRCDV 255 VDTHVFRVGNRTG+APGKTPLEVELGLE+VIP EFMLHAHHWLILHGRYTCLAR PRC V Sbjct: 189 VDTHVFRVGNRTGMAPGKTPLEVELGLERVIPDEFMLHAHHWLILHGRYTCLARSPRCAV 248 Query: 256 CLINDLCRWPEKTV 269 CLINDLCRWPEKT+ Sbjct: 249 CLINDLCRWPEKTI 262 >ref|NP_767329.1| endonuclease III [Bradyrhizobium japonicum USDA 110] dbj|BAC45954.1| endonuclease III [Bradyrhizobium japonicum USDA 110] Length = 260 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/212 (88%), Positives = 201/212 (94%) Query: 58 KPWTSEEVYEAFDRFRKANPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATRALFAVA 117 KPWT E+ E F RFRKANPEPKGELEH+NP+TLLVAVVLSAQATDAGVNKATRALF VA Sbjct: 49 KPWTPAEIREVFSRFRKANPEPKGELEHVNPFTLLVAVVLSAQATDAGVNKATRALFEVA 108 Query: 118 DTPEKMLELGEDRVRDYIKTIGLYRNKARNVIALSQKLIAEFGGEVPRTRAEIESLPGAG 177 DTP+KML+LGE+ +R+YIKTIGLYR KA+NVIALS K+++EFGGEVPRTRAEIESLPGAG Sbjct: 109 DTPQKMLDLGEESLREYIKTIGLYRTKAKNVIALSAKVLSEFGGEVPRTRAEIESLPGAG 168 Query: 178 RKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPTEFMLHAHHW 237 RKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIP EFMLHAHHW Sbjct: 169 RKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPAEFMLHAHHW 228 Query: 238 LILHGRYTCLARGPRCDVCLINDLCRWPEKTV 269 LILHGRYTCLAR PRC+VCLINDLCRWPEKTV Sbjct: 229 LILHGRYTCLARKPRCEVCLINDLCRWPEKTV 260 >ref|YP_530233.1| endonuclease III [Rhodopseudomonas palustris BisB18] gb|ABD85914.1| endonuclease III / DNA-(apurinic or apyrimidinic site) lyase [Rhodopseudomonas palustris BisB18] Length = 256 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 189/211 (89%), Positives = 199/211 (94%) Query: 59 PWTSEEVYEAFDRFRKANPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATRALFAVAD 118 PWT+ EV EAF RF KANPEPKGELEHLNP+TLLVAVVLSAQATDAGVNKATRALFAVAD Sbjct: 46 PWTAAEVREAFGRFAKANPEPKGELEHLNPFTLLVAVVLSAQATDAGVNKATRALFAVAD 105 Query: 119 TPEKMLELGEDRVRDYIKTIGLYRNKARNVIALSQKLIAEFGGEVPRTRAEIESLPGAGR 178 TP+KML+LGED VRD IKTIGLYRNKA+NVIALSQKLI+EFGGEVPR+RAE+E+LPGAGR Sbjct: 106 TPQKMLDLGEDAVRDSIKTIGLYRNKAKNVIALSQKLISEFGGEVPRSRAELETLPGAGR 165 Query: 179 KTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPTEFMLHAHHWL 238 KTANVVLNMAFGE TMAVDTHVFRV NRTGLA G TPL VELGLEKVIPTEFMLHAHHWL Sbjct: 166 KTANVVLNMAFGERTMAVDTHVFRVANRTGLASGDTPLAVELGLEKVIPTEFMLHAHHWL 225 Query: 239 ILHGRYTCLARGPRCDVCLINDLCRWPEKTV 269 ILHGRYTCLAR PRC+VCLINDLCRWPEKTV Sbjct: 226 ILHGRYTCLARKPRCEVCLINDLCRWPEKTV 256 >ref|YP_001236404.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III [Bradyrhizobium sp. BTAi1] gb|ABQ32498.1| DNA-(apurinic or apyrimidinic site) lyase / endonuclease III [Bradyrhizobium sp. BTAi1] Length = 274 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/274 (76%), Positives = 223/274 (81%), Gaps = 15/274 (5%) Query: 9 MAKIIRSQRASTSSVRSAPKKKAAKAATLLPKPGAKKAAKKAAKRTAKPK---------- 58 MAKI R QRA + VRS KK A A PK AK A +T PK Sbjct: 1 MAKITRPQRAKPAPVRSPAKKAAKAAPKTAPKTAAKAPKTAANAKTV-PKTPARAVKKAL 59 Query: 59 ----PWTSEEVYEAFDRFRKANPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATRALF 114 PWT E+ EAF RF +NPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATR LF Sbjct: 60 KAAKPWTPAEIREAFSRFAASNPEPKGELEHLNPYTLLVAVVLSAQATDAGVNKATRPLF 119 Query: 115 AVADTPEKMLELGEDRVRDYIKTIGLYRNKARNVIALSQKLIAEFGGEVPRTRAEIESLP 174 AVADTP+KM+ LGE+++RDYIKTIGLYR KA+NVIALSQKLI+EFGGEVPRTRAE+ESLP Sbjct: 120 AVADTPQKMIALGEEQLRDYIKTIGLYRTKAKNVIALSQKLISEFGGEVPRTRAELESLP 179 Query: 175 GAGRKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPTEFMLHA 234 GAGRKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIP EFMLHA Sbjct: 180 GAGRKTANVVLNMAFGEHTMAVDTHVFRVGNRTGLAPGKTPLEVELGLEKVIPAEFMLHA 239 Query: 235 HHWLILHGRYTCLARGPRCDVCLINDLCRWPEKT 268 HHWLILHGRYTCLAR PRC++CLI DLCRWPEKT Sbjct: 240 HHWLILHGRYTCLARKPRCELCLIKDLCRWPEKT 273