BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0106.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767714.1| transcriptional regulator [Bradyrhizobium japon... 293 2e-77 gb|EGP46409.1| transcriptional regulator [Achromobacter xylosoxi... 293 3e-77 gb|EFV84795.1| AraC family Transcriptional regulator [Achromobac... 285 5e-75 ref|NP_102842.1| transcriptional regulator [Mesorhizobium loti M... 253 2e-65 ref|YP_004612422.1| Helix-turn-helix, AraC domain-containing pro... 246 2e-63 >ref|NP_767714.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46339.1| bll1074 [Bradyrhizobium japonicum USDA 110] Length = 281 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 159/280 (56%), Positives = 195/280 (69%), Gaps = 3/280 (1%) Query: 1 MAASASPLAFDLAQRLPSPRLAGLIVRITGYRETATGRFAQRQTAPLIVPLIISFGSPFL 60 M A+A+P D+ +R SPRLA L+ I+ YRE G R APL +PL+++ G+PF Sbjct: 5 MDAAANP---DVIRRPASPRLARLVSSISFYRERGVGLAGFRHAAPLALPLLVNLGTPFR 61 Query: 61 IALSREPGAADRQLSFAAGLHAGPVYIESDGRAACVQVDFTPLGAYSFFGGAVTDLVGRM 120 IAL REP AD Q SFAAGL GPV IESDGRA CVQVDFTPLGAY FFGGAV DL RM Sbjct: 62 IALGREPDVADAQPSFAAGLFPGPVLIESDGRAECVQVDFTPLGAYRFFGGAVPDLTARM 121 Query: 121 VDIDDVLGHDGRRLREQLGAVTCWQRRFDLLEAFVLRRAGRMPSPEVAFAYRKLARSAGA 180 V + D+LG DG LR ++ WQRRF+++E FVLRRA PSP +AFA L R AGA Sbjct: 122 VGLGDILGRDGENLRARVAEAVGWQRRFEIVEDFVLRRAVHEPSPAIAFALDTLWRRAGA 181 Query: 181 ISITALADEIGWSRKHLASRFRSELGLAPKSLARMMRFHRASQLAQSQAALGWAGIAVES 240 + IT LA +IGWSRKHL RF +E+G+ PK++A+M+RFHRA LA++ GWA +A ++ Sbjct: 182 VRITELATDIGWSRKHLTRRFHNEIGVPPKTMAQMLRFHRACSLARTDGTGGWAAVAADA 241 Query: 241 GYADQAHLAREFVEFAGEPPTAWARRQALTDRRLVHAGDG 280 GYADQAHLAR+F F+GE PT WA R D RL+ G G Sbjct: 242 GYADQAHLARDFRIFSGETPTGWAARLDFADPRLMRDGGG 281 >gb|EGP46409.1| transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 265 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 159/265 (60%), Positives = 188/265 (70%), Gaps = 3/265 (1%) Query: 5 ASPLAFDLAQRLPSPRLAGLIVRITGYRETATGRFAQ-RQTAPLIVPLIISFGSPFLIAL 63 AS ++ +L Q PS RLAG++ +TGYRE G Q ++APL VPL+ISFGSPF I L Sbjct: 2 ASQMSCELIQVAPSARLAGIVSHLTGYREGGQGAGMQWLESAPLTVPLVISFGSPFGIGL 61 Query: 64 SREPGAADRQLSFAAGLHAGPVYIESDGRAACVQVDFTPLGAYSFFGGAVTDLVGRMVDI 123 R G A SFA+GL+AGPV++ SDG A C+QVDFT GAY FFGG V DL R+VD+ Sbjct: 62 GRADGPAPWS-SFASGLYAGPVFVASDGAAECLQVDFTLPGAYRFFGGMVEDLANRLVDL 120 Query: 124 DDVLGHDGRRLREQLGAVTCWQRRFDLLEAFVLRRAGRMPSPEVAFAYRKLARSAGAISI 183 D LG DG LREQLG + W RRF L+EAF+ RR GR PS VA AYR L R G + I Sbjct: 121 GDALGRDGPALREQLGNLPDWPRRFALVEAFIARRLGRAPSEPVAHAYRLLLREHGTLRI 180 Query: 184 TALADEIGWSRKHLASRFRSELGLAPKSLARMMRFHRASQLAQSQAALGWAGIAVESGYA 243 ALA EIGWSRKHL RFR+E+GL PK+LARM+RFH+A +LAQ Q WA +A GYA Sbjct: 181 GALAAEIGWSRKHLLQRFRAEMGLGPKALARMLRFHQACRLAQ-QPGSEWAQVAAAGGYA 239 Query: 244 DQAHLAREFVEFAGEPPTAWARRQA 268 DQAHLAREF++ AGE P AWARRQA Sbjct: 240 DQAHLAREFIDLAGESPQAWARRQA 264 >gb|EFV84795.1| AraC family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 265 Score = 285 bits (729), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 156/265 (58%), Positives = 186/265 (70%), Gaps = 3/265 (1%) Query: 5 ASPLAFDLAQRLPSPRLAGLIVRITGYRETATGRFAQ-RQTAPLIVPLIISFGSPFLIAL 63 AS + L Q PS RLAG++ +TGYRE+ G Q + APL VPL+ISFGSPF I L Sbjct: 2 ASQTSCALIQVPPSARLAGIVSHLTGYRESGQGAGMQWLEGAPLTVPLVISFGSPFGIGL 61 Query: 64 SREPGAADRQLSFAAGLHAGPVYIESDGRAACVQVDFTPLGAYSFFGGAVTDLVGRMVDI 123 R AA SFA+GL+AGPV++ SDG A C+QVDFT GAY FFGG V DL R+VD+ Sbjct: 62 GRADAAAPWS-SFASGLYAGPVFVASDGAAECLQVDFTLPGAYRFFGGMVADLANRLVDL 120 Query: 124 DDVLGHDGRRLREQLGAVTCWQRRFDLLEAFVLRRAGRMPSPEVAFAYRKLARSAGAISI 183 D LG DG LRE+LG + W RRF L+EAF+LRR GR PS V AYR L R G + I Sbjct: 121 GDALGRDGPALRERLGNLPDWPRRFALVEAFILRRLGRAPSEPVTHAYRLLLRDHGTLRI 180 Query: 184 TALADEIGWSRKHLASRFRSELGLAPKSLARMMRFHRASQLAQSQAALGWAGIAVESGYA 243 ALA EIGWSRKHL RFR+E+GL PK+LARM+RFH+A +LA+ + WA +A GYA Sbjct: 181 GALAAEIGWSRKHLLHRFRAEMGLGPKALARMLRFHQACRLAREPGS-EWAQVAAAGGYA 239 Query: 244 DQAHLAREFVEFAGEPPTAWARRQA 268 DQAHLAREF++ AGE P AWARRQA Sbjct: 240 DQAHLAREFIDLAGESPQAWARRQA 264 >ref|NP_102842.1| transcriptional regulator [Mesorhizobium loti MAFF303099] dbj|BAB48628.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 276 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 136/260 (52%), Positives = 174/260 (66%), Gaps = 5/260 (1%) Query: 10 FDLAQRLPSPRLAGLIVRITGYRETATGRFAQRQTAPLIVPLIISFGSPFLIALSREPGA 69 F++ +RLP P L G++ I GYRETA G F + A L VPL+ISF PF I L + PG Sbjct: 19 FEMRRRLPDPALDGIVSDICGYRETAAGHFRNVEYASLTVPLVISFAEPFAIGLGKAPGD 78 Query: 70 ADRQLSFAAGLHAGPVYIESDGRAACVQVDFTPLGAYSFFGGAVTDLVGRMVDIDDVLGH 129 DR SFAAGL AGPV IES G A CVQ++FTPLGA FF +++L MV +DDVLG Sbjct: 79 NDRFASFAAGLFAGPVMIESFGSACCVQINFTPLGARRFFRLPMSELTDSMVVLDDVLGA 138 Query: 130 DGRRLREQLGAVTCWQRRFDLLEAFV---LRRAGRMPSPEVAFAYRKLARSAGAISITAL 186 DG LREQLG W RFDL EAFV L RA P ++A+AY ++ S G I+++ Sbjct: 139 DGMALREQLGNTPDWASRFDLAEAFVTARLVRAAETPL-QIAWAYDRIVASGGRARISSI 197 Query: 187 ADEIGWSRKHLASRFRSELGLAPKSLARMMRFHRASQLAQSQAALGWAGIAVESGYADQA 246 A+++GWSRKHLA F + +G+ PK+L+R++RF+RA L++ Q WA IA + GYADQA Sbjct: 198 AEKLGWSRKHLAGSFSNAIGIGPKTLSRIVRFNRALGLSR-QPTADWADIAADCGYADQA 256 Query: 247 HLAREFVEFAGEPPTAWARR 266 HL REF + AGE PTA + R Sbjct: 257 HLVREFRDLAGETPTALSVR 276 >ref|YP_004612422.1| Helix-turn-helix, AraC domain-containing protein [Mesorhizobium opportunistum WSM2075] gb|AEH88328.1| Helix-turn-helix, AraC domain protein [Mesorhizobium opportunistum WSM2075] Length = 276 Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 135/260 (51%), Positives = 172/260 (66%), Gaps = 5/260 (1%) Query: 10 FDLAQRLPSPRLAGLIVRITGYRETATGRFAQRQTAPLIVPLIISFGSPFLIALSREPGA 69 F++ +RLP L G++ I GYRETA G F + A L VPL+ISF PF I L + PG Sbjct: 19 FEMRRRLPDTALEGIVSDICGYRETAPGHFHNVEYASLTVPLVISFAEPFAIGLGKTPGD 78 Query: 70 ADRQLSFAAGLHAGPVYIESDGRAACVQVDFTPLGAYSFFGGAVTDLVGRMVDIDDVLGH 129 DR SFAAGL AGPV IES G A CVQV+FTPLGA FF +++L MV +DDVLG Sbjct: 79 NDRFASFAAGLFAGPVLIESFGAACCVQVNFTPLGARRFFRLPMSELTDSMVVLDDVLGT 138 Query: 130 DGRRLREQLGAVTCWQRRFDLLEAFV---LRRAGRMPSPEVAFAYRKLARSAGAISITAL 186 +G LRE+LG W RFD+ EAFV L A + P E+A+AY ++ S G I +L Sbjct: 139 EGVALRERLGNAQDWTTRFDIAEAFVAARLTSAAQTPL-EIAWAYDRIIASGGRTRIASL 197 Query: 187 ADEIGWSRKHLASRFRSELGLAPKSLARMMRFHRASQLAQSQAALGWAGIAVESGYADQA 246 A+ +GWSRKHLA +F +G+ PK+L+R++RF+RA L++ Q A WA IA + GYADQA Sbjct: 198 AERLGWSRKHLAGKFSDAIGIGPKTLSRIVRFNRALGLSR-QPAAHWADIAADCGYADQA 256 Query: 247 HLAREFVEFAGEPPTAWARR 266 HL REF + AGE PTA + R Sbjct: 257 HLVREFRDLAGETPTAVSAR 276