BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0192.0102.p         (224 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14] ...   436   e-120
ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A] >gi...   430   e-118
ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-25...   429   e-118
ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1] >...   428   e-118
ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris Bis...   424   e-117

>ref|YP_575512.1| ribonuclease PH [Nitrobacter hamburgensis X14]
 sp|Q1QRU5.1|RNPH_NITHX RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gb|ABE61052.1| RNAse PH [Nitrobacter hamburgensis X14]
          Length = 237

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/224 (95%), Positives = 220/224 (98%)

Query: 1   VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60
           VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER
Sbjct: 14  VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 73

Query: 61  TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120
           TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA
Sbjct: 74  TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 133

Query: 121 WVALADCINWMKTRNMLKTNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMTG 180
           WVALADCI WMK RNM+KT+VLRDNVAA+SCGIY GTPVLDLDYAEDSEADTDANFVMTG
Sbjct: 134 WVALADCIGWMKARNMIKTSVLRDNVAAVSCGIYNGTPVLDLDYAEDSEADTDANFVMTG 193

Query: 181 DGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224
           DGRIIEVQGTAEKTPFS+ EFLAL+ALA+KGVARLVDLQK+AVA
Sbjct: 194 DGRIIEVQGTAEKTPFSQDEFLALLALAKKGVARLVDLQKMAVA 237


>ref|ZP_01045050.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
 gb|EAQ37055.1| ribonuclease PH [Nitrobacter sp. Nb-311A]
          Length = 237

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/224 (93%), Positives = 218/224 (97%)

Query: 1   VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60
           VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER
Sbjct: 14  VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 73

Query: 61  TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120
           TRREASAGKQGGRTVEIQRLIGRSLRAA+DLEALGERQITVDCDVIQADGGTRTASITGA
Sbjct: 74  TRREASAGKQGGRTVEIQRLIGRSLRAAIDLEALGERQITVDCDVIQADGGTRTASITGA 133

Query: 121 WVALADCINWMKTRNMLKTNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMTG 180
           WVALADC+NWMK R+MLK +VLR NVAAISCGIY GTPVLDLDYAEDSEADTDANFVMTG
Sbjct: 134 WVALADCVNWMKARDMLKASVLRGNVAAISCGIYNGTPVLDLDYAEDSEADTDANFVMTG 193

Query: 181 DGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224
           +GRIIEVQGTAEK PFS+ EFLALMALA+KGVARLVDLQK+AVA
Sbjct: 194 EGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>ref|YP_316813.1| ribonuclease PH [Nitrobacter winogradskyi Nb-255]
 sp|Q3SW80.1|RNPH_NITWN RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gb|ABA03461.1| RNAse PH [Nitrobacter winogradskyi Nb-255]
          Length = 237

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/224 (93%), Positives = 217/224 (96%)

Query: 1   VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60
           VSLERGVVKYAEGSC+VKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER
Sbjct: 14  VSLERGVVKYAEGSCLVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 73

Query: 61  TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120
           TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQIT+DCDVIQADGGTRTASITGA
Sbjct: 74  TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITIDCDVIQADGGTRTASITGA 133

Query: 121 WVALADCINWMKTRNMLKTNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMTG 180
           WVALADC+NWMK RNMLK  VLR NVAAISCGIY GTPVLDLDYAEDSEADTDANFVMTG
Sbjct: 134 WVALADCVNWMKARNMLKAGVLRGNVAAISCGIYNGTPVLDLDYAEDSEADTDANFVMTG 193

Query: 181 DGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224
           +GRIIEVQGTAEK PFS+ EFLALMALA+KGVARLVDLQK+AVA
Sbjct: 194 EGRIIEVQGTAEKVPFSDDEFLALMALAKKGVARLVDLQKMAVA 237


>ref|YP_001236389.1| ribonuclease PH [Bradyrhizobium sp. BTAi1]
 sp|A5E8I9.1|RNPH_BRASB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gb|ABQ32483.1| RNAse PH [Bradyrhizobium sp. BTAi1]
          Length = 237

 Score =  428 bits (1100), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/224 (93%), Positives = 217/224 (96%)

Query: 1   VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60
           VSLERGVVKYAEGSC+VKFGDTHVLVTATLE+RLPPWLKGQGRGW+TAEYGMLPRATLER
Sbjct: 14  VSLERGVVKYAEGSCLVKFGDTHVLVTATLEDRLPPWLKGQGRGWITAEYGMLPRATLER 73

Query: 61  TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120
           TRREASAGKQ GRTVEIQRLIGRSLR A+DLEALGERQITVDCDV+QADGGTRTASITGA
Sbjct: 74  TRREASAGKQTGRTVEIQRLIGRSLRTAIDLEALGERQITVDCDVLQADGGTRTASITGA 133

Query: 121 WVALADCINWMKTRNMLKTNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVMTG 180
           WVALADCI WMKTRNMLKT VLR NVAAISCGIY GTPVLDLDYAEDSEA+TDANFVMTG
Sbjct: 134 WVALADCIKWMKTRNMLKTEVLRANVAAISCGIYNGTPVLDLDYAEDSEAETDANFVMTG 193

Query: 181 DGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224
           DGRIIEVQGTAEKTPF+E EFLALMALARKGVARLVDLQK+AVA
Sbjct: 194 DGRIIEVQGTAEKTPFTEAEFLALMALARKGVARLVDLQKMAVA 237


>ref|YP_530219.1| ribonuclease PH [Rhodopseudomonas palustris BisB18]
 sp|Q21CI6.1|RNPH_RHOPB RecName: Full=Ribonuclease PH; Short=RNase PH; AltName: Full=tRNA
           nucleotidyltransferase
 gb|ABD85900.1| RNAse PH [Rhodopseudomonas palustris BisB18]
          Length = 239

 Score =  424 bits (1091), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/226 (93%), Positives = 216/226 (95%), Gaps = 2/226 (0%)

Query: 1   VSLERGVVKYAEGSCMVKFGDTHVLVTATLEERLPPWLKGQGRGWVTAEYGMLPRATLER 60
           VSLERGVVKYAEGSCMVKFGDTHVLVTATLE+RLPPWLKGQGRGWVTAEYGMLPRATLER
Sbjct: 14  VSLERGVVKYAEGSCMVKFGDTHVLVTATLEDRLPPWLKGQGRGWVTAEYGMLPRATLER 73

Query: 61  TRREASAGKQGGRTVEIQRLIGRSLRAAVDLEALGERQITVDCDVIQADGGTRTASITGA 120
           TRREASAGKQ GRTVEIQRLIGRSLRA VDL+ALGERQITVDCDVIQADGGTRTASITGA
Sbjct: 74  TRREASAGKQNGRTVEIQRLIGRSLRATVDLQALGERQITVDCDVIQADGGTRTASITGA 133

Query: 121 WVALADCINWMKTRNMLK--TNVLRDNVAAISCGIYQGTPVLDLDYAEDSEADTDANFVM 178
           WVALADCI WMKTRNM K    VLRDNVAAISCGIY GTPVLDLDYAEDSEADTDANFVM
Sbjct: 134 WVALADCIGWMKTRNMFKGTAPVLRDNVAAISCGIYNGTPVLDLDYAEDSEADTDANFVM 193

Query: 179 TGDGRIIEVQGTAEKTPFSEGEFLALMALARKGVARLVDLQKIAVA 224
           TGDGRIIEVQGTAEKTPFS+ EFLALMALA+KGVARLVDLQK+AVA
Sbjct: 194 TGDGRIIEVQGTAEKTPFSQDEFLALMALAKKGVARLVDLQKMAVA 239