BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0094.p (429 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004107103.1| hypothetical protein Rpdx1_0735 [Rhodopseudo... 713 0.0 ref|NP_771145.1| hypothetical protein blr4505 [Bradyrhizobium ja... 708 0.0 ref|YP_484378.1| PepSY-associated TM helix [Rhodopseudomonas pal... 703 0.0 ref|YP_532254.1| PepSY-associated TM helix [Rhodopseudomonas pal... 682 0.0 ref|YP_003071234.1| hypothetical protein METDI5832 [Methylobacte... 552 e-155 >ref|YP_004107103.1| hypothetical protein Rpdx1_0735 [Rhodopseudomonas palustris DX-1] gb|ADU42370.1| hypothetical protein Rpdx1_0735 [Rhodopseudomonas palustris DX-1] Length = 429 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/429 (79%), Positives = 380/429 (88%) Query: 1 MRPIFGRLHRWAGLLTAAFLFFSGVTGAIISWDHEIDDVLNRKLLEVTSSGPAIPSVELA 60 MR +FGRLHRWAGL+TAAFLFFSGVTGA+ISWDHEID+ +N +L +V ++GPAIPS+ELA Sbjct: 1 MRLMFGRLHRWAGLITAAFLFFSGVTGAVISWDHEIDETINARLFDVATTGPAIPSIELA 60 Query: 61 RLIEQRDPRARVVHMFMTAEKGESLWFFVLPRIDPATGKRYTLDYNQVFLDPNTGVELGR 120 + IE RDPRARV+ MT E+G SL FFVLPRIDPATGKRYTLDYNQVFLDPNTG ELGR Sbjct: 61 QRIEHRDPRARVIFFSMTPEQGHSLSFFVLPRIDPATGKRYTLDYNQVFLDPNTGAELGR 120 Query: 121 RYWGAVWPVTRENFVSFLYKLHYTMHIPEFWGSDRWGMRFLGVIAVIWTIDCFVGFYLTL 180 RYWGAVWP+TRENFVSFLYKLHYTMH+PEFWGSDRWG R LG++A+IWTIDCFVGFYLTL Sbjct: 121 RYWGAVWPITRENFVSFLYKLHYTMHVPEFWGSDRWGARLLGIVAIIWTIDCFVGFYLTL 180 Query: 181 PSRRRARVERASAISGSRGKGFWSRWAPAWKIKTSGSAYRINFDIHRAFSLWTWALLFVM 240 P+R+ R +A A+ GKGFW+RWAPAWKIKTSGSAYRINFDIHRAFSLWTW +LF++ Sbjct: 181 PARKLLRAGQAPAVKRELGKGFWARWAPAWKIKTSGSAYRINFDIHRAFSLWTWGVLFIV 240 Query: 241 AFTAFSLNLYFEVFSPLMKTVSNYTPTPYEQRPYRHLDDPIEPKMTYAEIATRAAADGKA 300 AFTAFSLNLYFEVFSPLMKTVSNYTPTPYEQRPYR LD PIEPKM++AEIA RA ADGKA Sbjct: 241 AFTAFSLNLYFEVFSPLMKTVSNYTPTPYEQRPYRDLDHPIEPKMSFAEIAARATADGKA 300 Query: 301 RGWTAPIGSINYGPAHGVYAVAFFEPGDEHGAAGVGPAQLYYDSEDGRPLGEGLPWVGTA 360 RG+T P+GS+ YGPAHGV+A AFF+PG+EHGAAGVGPAQLYYDSEDGR LG+ LPWVGTA Sbjct: 301 RGFTEPLGSLFYGPAHGVFAAAFFKPGEEHGAAGVGPAQLYYDSEDGRYLGDRLPWVGTA 360 Query: 361 ADVFVQMQFPLHSGRIAGLPGRILISLTGLVVAALSVTGVVIWWRKRRARICARETVRTR 420 ADVFVQMQ PLHSGRI GLPGRILIS GLVVAALSVTGVVIW RKRRAR+ + + + Sbjct: 361 ADVFVQMQLPLHSGRILGLPGRILISAMGLVVAALSVTGVVIWARKRRARLATKRSRQAA 420 Query: 421 PERRLAPAE 429 RLAPAE Sbjct: 421 SGARLAPAE 429 >ref|NP_771145.1| hypothetical protein blr4505 [Bradyrhizobium japonicum USDA 110] dbj|BAC49770.1| blr4505 [Bradyrhizobium japonicum USDA 110] Length = 429 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/429 (82%), Positives = 386/429 (89%) Query: 1 MRPIFGRLHRWAGLLTAAFLFFSGVTGAIISWDHEIDDVLNRKLLEVTSSGPAIPSVELA 60 MR IFGRLHRWAGLLTA FLFFSG+TGAIISWDHEIDDVLN L +VTS GPAIPS+ELA Sbjct: 1 MRAIFGRLHRWAGLLTAGFLFFSGITGAIISWDHEIDDVLNSHLFDVTSKGPAIPSIELA 60 Query: 61 RLIEQRDPRARVVHMFMTAEKGESLWFFVLPRIDPATGKRYTLDYNQVFLDPNTGVELGR 120 +LIEQRDPRARVV++FMT E+G SLWFF++PRIDPATGKRY LDYNQVFLDPNTGVELGR Sbjct: 61 KLIEQRDPRARVVYLFMTPEEGHSLWFFIMPRIDPATGKRYALDYNQVFLDPNTGVELGR 120 Query: 121 RYWGAVWPVTRENFVSFLYKLHYTMHIPEFWGSDRWGMRFLGVIAVIWTIDCFVGFYLTL 180 RYWGAVWPVTRENFVSFLYKLHYTMHIPEFWGSDRWGMR LG+IA+IWTIDCFVGFYLTL Sbjct: 121 RYWGAVWPVTRENFVSFLYKLHYTMHIPEFWGSDRWGMRLLGIIAIIWTIDCFVGFYLTL 180 Query: 181 PSRRRARVERASAISGSRGKGFWSRWAPAWKIKTSGSAYRINFDIHRAFSLWTWALLFVM 240 PSRR A+ RA ++ +GFW+RWAPAW IKTSGSAYRINFDIHRAFSLWTW +LFV+ Sbjct: 181 PSRRSAKAARAPQVTRQLERGFWARWAPAWTIKTSGSAYRINFDIHRAFSLWTWGVLFVI 240 Query: 241 AFTAFSLNLYFEVFSPLMKTVSNYTPTPYEQRPYRHLDDPIEPKMTYAEIATRAAADGKA 300 AFTAFSLNLYFEVFSPLMK VSNYTPTPYEQRPYR LD+PIEPK+T+A+IA RAAADGK Sbjct: 241 AFTAFSLNLYFEVFSPLMKMVSNYTPTPYEQRPYRDLDNPIEPKVTFADIAARAAADGKG 300 Query: 301 RGWTAPIGSINYGPAHGVYAVAFFEPGDEHGAAGVGPAQLYYDSEDGRPLGEGLPWVGTA 360 RGW+ P+G+++YGPAHGVYA A+F PGD+HGA GVGPAQLYYDSEDGRPLG LPWVGTA Sbjct: 301 RGWSTPVGALSYGPAHGVYAAAYFHPGDDHGAGGVGPAQLYYDSEDGRPLGARLPWVGTA 360 Query: 361 ADVFVQMQFPLHSGRIAGLPGRILISLTGLVVAALSVTGVVIWWRKRRARICARETVRTR 420 AD+FVQ QFPLHSGRI GL GRILIS+ GLVVAALSVTGVVIWWRKRRAR+ RET R Sbjct: 361 ADIFVQAQFPLHSGRIVGLFGRILISIMGLVVAALSVTGVVIWWRKRRARVRVRETAAMR 420 Query: 421 PERRLAPAE 429 R+L PAE Sbjct: 421 LSRQLTPAE 429 >ref|YP_484378.1| PepSY-associated TM helix [Rhodopseudomonas palustris HaA2] gb|ABD05467.1| PepSY-associated TM helix [Rhodopseudomonas palustris HaA2] Length = 439 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/414 (81%), Positives = 370/414 (89%) Query: 1 MRPIFGRLHRWAGLLTAAFLFFSGVTGAIISWDHEIDDVLNRKLLEVTSSGPAIPSVELA 60 MR IFGRLHRWAGLLTAAFLFFSGVTGAIISWDHEID+ LN K +V++ GPA+ SV+L Sbjct: 1 MRAIFGRLHRWAGLLTAAFLFFSGVTGAIISWDHEIDETLNAKFYDVSTPGPAMASVDLV 60 Query: 61 RLIEQRDPRARVVHMFMTAEKGESLWFFVLPRIDPATGKRYTLDYNQVFLDPNTGVELGR 120 + IE RDPRARV+ MT E G SL FFV PRIDP+T KRY LDYNQ+FLDPNTG ELGR Sbjct: 61 KQIESRDPRARVIFFPMTPEPGHSLAFFVQPRIDPSTSKRYPLDYNQIFLDPNTGAELGR 120 Query: 121 RYWGAVWPVTRENFVSFLYKLHYTMHIPEFWGSDRWGMRFLGVIAVIWTIDCFVGFYLTL 180 RYWGAVWPVT ENFVSFLYKLHYTMHIPEFWGSDRWG R LG+IA+IWTIDCFVGFYLTL Sbjct: 121 RYWGAVWPVTSENFVSFLYKLHYTMHIPEFWGSDRWGARLLGIIAIIWTIDCFVGFYLTL 180 Query: 181 PSRRRARVERASAISGSRGKGFWSRWAPAWKIKTSGSAYRINFDIHRAFSLWTWALLFVM 240 P+RR R +A ++ GKGFW+RWAPAWKIKTSGSAYRINFDIHRAFSLWTWA+LFV+ Sbjct: 181 PARRLLRAGQAPSVKRELGKGFWARWAPAWKIKTSGSAYRINFDIHRAFSLWTWAVLFVV 240 Query: 241 AFTAFSLNLYFEVFSPLMKTVSNYTPTPYEQRPYRHLDDPIEPKMTYAEIATRAAADGKA 300 AFTAFSLNLYFEVFSP+MKTVSNYTPTP+EQRPYR LDDPIEPKM++A+IA RA ADGKA Sbjct: 241 AFTAFSLNLYFEVFSPIMKTVSNYTPTPFEQRPYRSLDDPIEPKMSFAQIAARAEADGKA 300 Query: 301 RGWTAPIGSINYGPAHGVYAVAFFEPGDEHGAAGVGPAQLYYDSEDGRPLGEGLPWVGTA 360 RG+TAP+GS+ YGPAHGV+A FF+PGD+HGAAGVGPAQLYYDSEDGRPLGE LPWVGTA Sbjct: 301 RGFTAPLGSLFYGPAHGVFAAQFFKPGDDHGAAGVGPAQLYYDSEDGRPLGERLPWVGTA 360 Query: 361 ADVFVQMQFPLHSGRIAGLPGRILISLTGLVVAALSVTGVVIWWRKRRARICAR 414 AD+FVQMQFPLHSGRI GLPGRILIS GLVVAALSVTGVVIWWRKRRARI +R Sbjct: 361 ADIFVQMQFPLHSGRILGLPGRILISAMGLVVAALSVTGVVIWWRKRRARIASR 414 >ref|YP_532254.1| PepSY-associated TM helix [Rhodopseudomonas palustris BisB18] gb|ABD87935.1| PepSY-associated TM helix [Rhodopseudomonas palustris BisB18] Length = 428 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/429 (78%), Positives = 372/429 (86%), Gaps = 1/429 (0%) Query: 1 MRPIFGRLHRWAGLLTAAFLFFSGVTGAIISWDHEIDDVLNRKLLEVTSSGPAIPSVELA 60 MR +FGRLHRWAGLLTA FLFFSG+TGAIISWDHE+DD+LN++ EVT++GPA PSVELA Sbjct: 1 MRSMFGRLHRWAGLLTAGFLFFSGITGAIISWDHELDDLLNKQFFEVTTNGPAKPSVELA 60 Query: 61 RLIEQRDPRARVVHMFMTAEKGESLWFFVLPRIDPATGKRYTLDYNQVFLDPNTGVELGR 120 LIEQRDPRA+V ++ AE GESL FFV PRIDPATGKR+TLDYNQVFLDPNTG ELGR Sbjct: 61 ALIEQRDPRAQVNYLLTAAEPGESLSFFVQPRIDPATGKRFTLDYNQVFLDPNTGAELGR 120 Query: 121 RYWGAVWPVTRENFVSFLYKLHYTMHIPEFWGSDRWGMRFLGVIAVIWTIDCFVGFYLTL 180 RYWGAVWPV+RENFVSFLYKLHYTM IPEFWGSDRWG R LGVIA+IWTIDCFVGFYLTL Sbjct: 121 RYWGAVWPVSRENFVSFLYKLHYTMQIPEFWGSDRWGTRILGVIAIIWTIDCFVGFYLTL 180 Query: 181 PSRRRARVERASAISGSRGKGFWSRWAPAWKIKTSGSAYRINFDIHRAFSLWTWALLFVM 240 P RRRA+ RA+ + G+GF +RWAPAW IKT+GSAYRINFDIHRAFSLWTWALLFV+ Sbjct: 181 PQRRRAKPGRAAVVERELGRGFLARWAPAWSIKTTGSAYRINFDIHRAFSLWTWALLFVI 240 Query: 241 AFTAFSLNLYFEVFSPLMKTVSNYTPTPYEQRPYRHLDDPIEPKMTYAEIATRAAADGKA 300 AFTAFSLNLYFEVFSP+MKTVS+YTPTPYEQR +R LD PI PK+ +A+I RA ADGKA Sbjct: 241 AFTAFSLNLYFEVFSPIMKTVSDYTPTPYEQREFRDLDHPIAPKLNFADILARATADGKA 300 Query: 301 RGWTAPIGSINYGPAHGVYAVAFFEPGDEHGAAGVGPAQLYYDSEDGRPLGEGLPWVGTA 360 RGW P+GS+ YG AHGVYA AFF PG++HGA GVGPAQLYYDSEDGRP+G+ LPWVGTA Sbjct: 301 RGWETPVGSLFYGSAHGVYAAAFFHPGEDHGAGGVGPAQLYYDSEDGRPIGQRLPWVGTA 360 Query: 361 ADVFVQMQFPLHSGRIAGLPGRILISLTGLVVAALSVTGVVIWWRKRRARICARETVRTR 420 AD+FVQ QFP HSGRI GLPGRILIS GLVVAALSVTGVVIWWRKRRAR+ R R Sbjct: 361 ADIFVQAQFPTHSGRILGLPGRILISFMGLVVAALSVTGVVIWWRKRRARVRIRSRADDR 420 Query: 421 PERRLAPAE 429 P RRLA AE Sbjct: 421 P-RRLAAAE 428 >ref|YP_003071234.1| hypothetical protein METDI5832 [Methylobacterium extorquens DM4] emb|CAX27430.1| conserved hypothetical protein; putative membrane protein precursor (three PepSY-associated transmembrane helices) [Methylobacterium extorquens DM4] Length = 433 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 269/431 (62%), Positives = 322/431 (74%), Gaps = 3/431 (0%) Query: 2 RPIFGRLHRWAGLLTAAFLFFSGVTGAIISWDHEIDDVLNRKLLEVTSSGPAIPSVELAR 61 R +F LHRWAGL AAFL +G+TGA+ISWDHE+DD LN L V S G AIP+++LAR Sbjct: 3 RSVFVLLHRWAGLTIAAFLLVAGLTGAVISWDHELDDWLNPHLHTVESRGAAIPALDLAR 62 Query: 62 LIEQRDPRARVVHMFMTAEKGESLWFFVLPRIDPATGKRYTLDYNQVFLDPNTGVELGRR 121 E RDPRARV ++ + AE GESL FV+PR+D ATG + L YNQVFLDP TG ELGRR Sbjct: 63 HFEARDPRARVAYLPLAAEAGESLSLFVMPRVDAATGGLHKLGYNQVFLDPVTGAELGRR 122 Query: 122 YWGAVWPVTRENFVSFLYKLHYTMHIPEFWGSDRWGMRFLGVIAVIWTIDCFVGFYLTLP 181 WG VWP+TRE +SFLYKLHY++H+PE WG +RWG+ LG++AV+W +D FVGFYLTLP Sbjct: 123 EWGQVWPITRETLISFLYKLHYSLHLPEMWGEERWGIWLLGIVAVVWMLDSFVGFYLTLP 182 Query: 182 SRRRARVERASAISGSRGKGFWSRWAPAWKIKTSGSAYRINFDIHRAFSLWTWALLFVMA 241 R+ A ER +A+ G+G+WSRW PAWK+KT+GS YR+ FD+HRAFSLWT+ALLFV+A Sbjct: 183 VRKPANPERPAAVERQLGRGWWSRWKPAWKVKTAGSPYRVTFDLHRAFSLWTFALLFVLA 242 Query: 242 FTAFSLNLYFEVFSPLMKTVSNYTPTPYEQRPYRHLDDPIEPKMTYAEIATRAAADGKAR 301 FTAFSLNLY EVF PLM +VS TP P RP+ PIEP + YA I A A+G+ R Sbjct: 243 FTAFSLNLYREVFLPLMSSVSQVTPDPSNTRPFVSPLKPIEPGVDYARILEAAQAEGQRR 302 Query: 302 GWTAPIGSINYGPAHGVYAVAFFEPGDEHGAAGVGPAQLYYDSEDGRPLGEGLPWVGTAA 361 GW P+G++ Y P G Y FFEPGD+HGAAGVGPA +Y+D DGR +G+ PWVGTAA Sbjct: 303 GWKEPVGALAYAPMQGFYTARFFEPGDDHGAAGVGPAAIYFDGGDGRVIGDRQPWVGTAA 362 Query: 362 DVFVQMQFPLHSGRIAGLPGRILISLTGLVVAALSVTGVVIWWRKRRARICARE---TVR 418 D+FVQ QFP+HSGRI GLPGRILIS GLVVA LSVTGVVIWWRKR AR+ R + Sbjct: 363 DIFVQAQFPVHSGRILGLPGRILISFMGLVVAMLSVTGVVIWWRKRAARLSVRRKAVALP 422 Query: 419 TRPERRLAPAE 429 TRP R PAE Sbjct: 423 TRPVSRPVPAE 433