BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0089.p (619 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767299.1| two-component hybrid sensor and regulator [Brad... 707 0.0 ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobact... 666 0.0 ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Brad... 662 0.0 ref|ZP_01045062.1| Signal transduction histidine kinase [Nitroba... 659 0.0 ref|ZP_08627853.1| two-component hybrid sensor and regulator [Br... 659 0.0 >ref|NP_767299.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45924.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 743 Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/462 (75%), Positives = 395/462 (85%) Query: 1 MGRFFRIKLRLRRFVRRHSWVATIVRSFTIFSVAFGSAFGFISGALSQQSGYDPNAFAIG 60 MGR FRIK+R+RRF R+H +A +RSF IFS FG A+GF+SG+ S+ SGYDP+ FAIG Sbjct: 3 MGRTFRIKVRMRRFRRQHPRIAFAIRSFMIFSATFGGAYGFVSGSRSENSGYDPHTFAIG 62 Query: 61 VSFLFALACLWIVTLGIRLRLMRKRLRTIAMHNEAMADRNWELQEAEQRASTLFEAQDDL 120 SFLFALACL + TL +RLR + KRLR +A HNEA+ DRNWEL+EAE+RA +LFE Q DL Sbjct: 63 ASFLFALACLGLATLSMRLRFVNKRLRKLAAHNEALIDRNWELKEAEERARSLFEQQGDL 122 Query: 121 IVLRDLDGLITYANDAYCELAQRPRSELIGSTATLKVLEQGDTALESNGTRVYDQKIEGP 180 IVLRD IT+ANDAYC LA + R L+G+ VLEQGD+A ES+GTRV+DQKI P Sbjct: 123 IVLRDHQNRITFANDAYCALAGQARGALVGTRFDFDVLEQGDSARESSGTRVHDQKIATP 182 Query: 181 LGPRWIAWREGLVRNDAGAPAEMQSVGRDVTDRTESEHALAEARDQADAANRAKSRFLAM 240 LG RWIAWREG VR DAG PAE+QSVGRDVTDRTE+E AL++ARDQADAANRAKSRFLAM Sbjct: 183 LGARWIAWREGYVRLDAGQPAELQSVGRDVTDRTETERALSDARDQADAANRAKSRFLAM 242 Query: 241 ASHEIRTPLNGIIGMSGLLMDTQLTPEQMTYVKAVKTSGDALLALIEELLDYSKIEAGKI 300 ASHEIRTPLNGIIGM GLL+DT LTPEQ TY KAVKTSG+AL+ALIEELLDYSKIEAGK+ Sbjct: 243 ASHEIRTPLNGIIGMGGLLLDTTLTPEQATYAKAVKTSGEALMALIEELLDYSKIEAGKL 302 Query: 301 DLEHRAFALSGLIEDITELLAPRAQTKGIEIAAYVDERLPTQVTGDAARLRQVLLNLAGN 360 DLE R FALS LIE+ITELLAPRAQ K +EIAAYVDERLP +V GDAARLRQVLLNLAGN Sbjct: 303 DLEQRPFALSTLIEEITELLAPRAQAKTLEIAAYVDERLPLEVVGDAARLRQVLLNLAGN 362 Query: 361 AIKFTATGGVALIVEPGIWPNEISFLVRDTGIGIAPEAQQRIFREFEQADDRIARSYGGT 420 AIKFTA+GGVALIVEPGI PNEISFLVRDTGIGIA EAQQRIFREFEQAD+R+AR+YGGT Sbjct: 363 AIKFTASGGVALIVEPGIRPNEISFLVRDTGIGIAAEAQQRIFREFEQADERVARTYGGT 422 Query: 421 GLGLSISDRIVKRMGGRITLASTPGAGSTFEVSIPLVAXRLR 462 GLGL+IS+RIVKRMGGRITLAS PG GSTFEV++PL R Sbjct: 423 GLGLAISERIVKRMGGRITLASEPGKGSTFEVAVPLAPSEAR 464 >ref|YP_575490.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] gb|ABE61030.1| multi-sensor hybrid histidine kinase [Nitrobacter hamburgensis X14] Length = 752 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/458 (73%), Positives = 391/458 (85%), Gaps = 2/458 (0%) Query: 1 MGRFFRIKLRLRRFVRRHSWVATIVRSFTIFSVAFGSAFGFISGALSQQSGYDPNAFAIG 60 M R F I+ RLRR +RRH + R+ T FS+AFG A+GF+SG S+ + YDPNAFAIG Sbjct: 2 MARLFWIRARLRRLIRRHPRLHLAFRTVTTFSIAFGGAYGFVSG--SRSADYDPNAFAIG 59 Query: 61 VSFLFALACLWIVTLGIRLRLMRKRLRTIAMHNEAMADRNWELQEAEQRASTLFEAQDDL 120 VSFLFALAC+ + L +RLR MR++LR I++HNE +ADRNWEL+EAE+RA +LFE+QDDL Sbjct: 60 VSFLFALACVALAILSMRLRWMRRKLRKISLHNETLADRNWELKEAEERARSLFESQDDL 119 Query: 121 IVLRDLDGLITYANDAYCELAQRPRSELIGSTATLKVLEQGDTALESNGTRVYDQKIEGP 180 IVLR+ DGLIT NDAYC LAQR R++L+GS L VLEQG++A+ESNGTR++DQ++E Sbjct: 120 IVLRNADGLITSVNDAYCVLAQRSRADLLGSRFALPVLEQGESAIESNGTRIHDQRVETA 179 Query: 181 LGPRWIAWREGLVRNDAGAPAEMQSVGRDVTDRTESEHALAEARDQADAANRAKSRFLAM 240 LGPRWIAWREGLVR DA PAE+Q VGRDVT+RTE+E+AL EARD A+AANRAKSRFLAM Sbjct: 180 LGPRWIAWREGLVRIDANHPAELQCVGRDVTNRTETEYALGEARDHANAANRAKSRFLAM 239 Query: 241 ASHEIRTPLNGIIGMSGLLMDTQLTPEQMTYVKAVKTSGDALLALIEELLDYSKIEAGKI 300 SHEIRTPLNGIIGMSGLL+DT LTPEQ TYVKAVK SGDALL+LIEELLDYS+IEAGKI Sbjct: 240 TSHEIRTPLNGIIGMSGLLLDTSLTPEQTTYVKAVKASGDALLSLIEELLDYSRIEAGKI 299 Query: 301 DLEHRAFALSGLIEDITELLAPRAQTKGIEIAAYVDERLPTQVTGDAARLRQVLLNLAGN 360 DLE R F LS LIEDITELLAPRAQ + +EIAAY+DE+LP +V GDA RLRQ+LLNLAGN Sbjct: 300 DLESRPFILSDLIEDITELLAPRAQARQLEIAAYIDEQLPIEVIGDATRLRQILLNLAGN 359 Query: 361 AIKFTATGGVALIVEPGIWPNEISFLVRDTGIGIAPEAQQRIFREFEQADDRIARSYGGT 420 AIKFT +GGVALIVEPG P I F+V+DTGIGI P+AQ R+FREFEQAD++IAR+YGGT Sbjct: 360 AIKFTPSGGVALIVEPGTEPGTIRFMVQDTGIGITPDAQARVFREFEQADEQIARNYGGT 419 Query: 421 GLGLSISDRIVKRMGGRITLASTPGAGSTFEVSIPLVA 458 GLGLSISDRIVKRMGGRITL S PGAGSTFEVSIPL A Sbjct: 420 GLGLSISDRIVKRMGGRITLESKPGAGSTFEVSIPLPA 457 >ref|YP_001236342.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ32436.1| PAS/PAC sensor hybrid histidine kinase [Bradyrhizobium sp. BTAi1] Length = 745 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/439 (73%), Positives = 375/439 (85%) Query: 18 HSWVATIVRSFTIFSVAFGSAFGFISGALSQQSGYDPNAFAIGVSFLFALACLWIVTLGI 77 H + TI+RS IF FG A+GFI +LS+ SGY+P+AFAIG SFLFALAC+ + TL + Sbjct: 18 HHTLFTILRSAMIFMAGFGGAYGFIKASLSETSGYNPHAFAIGASFLFALACVGLATLSM 77 Query: 78 RLRLMRKRLRTIAMHNEAMADRNWELQEAEQRASTLFEAQDDLIVLRDLDGLITYANDAY 137 RLR MRK++ +A+HNE +ADRNWELQEAEQRA +LFE Q DLIV+R+ DG I + NDAY Sbjct: 78 RLRFMRKKMHKLALHNEVLADRNWELQEAEQRARSLFEQQGDLIVMRESDGTIIFVNDAY 137 Query: 138 CELAQRPRSELIGSTATLKVLEQGDTALESNGTRVYDQKIEGPLGPRWIAWREGLVRNDA 197 C +A R L+GS + +LEQGD+ALE +GTRV+DQ+I+ +GPRWIAWRE LVR+DA Sbjct: 138 CRMAGLDRENLLGSQFSFDLLEQGDSALEPSGTRVHDQRIDSAIGPRWIAWREALVRSDA 197 Query: 198 GAPAEMQSVGRDVTDRTESEHALAEARDQADAANRAKSRFLAMASHEIRTPLNGIIGMSG 257 G PA Q VGRDVTDRTE+E ALAEARDQA+AANRAKSRFLAMASHEIRTPLNGI+GMSG Sbjct: 198 GHPAVQQCVGRDVTDRTETERALAEARDQANAANRAKSRFLAMASHEIRTPLNGILGMSG 257 Query: 258 LLMDTQLTPEQMTYVKAVKTSGDALLALIEELLDYSKIEAGKIDLEHRAFALSGLIEDIT 317 LL++TQLTPEQ TY KAV++SG+AL++LI ELLDYSKIEAGK+ LE + FAL+ LIE+IT Sbjct: 258 LLLETQLTPEQTTYAKAVRSSGEALMSLINELLDYSKIEAGKLALEAQPFALTALIEEIT 317 Query: 318 ELLAPRAQTKGIEIAAYVDERLPTQVTGDAARLRQVLLNLAGNAIKFTATGGVALIVEPG 377 ELLAPRAQ K +EIAAY+DERLPT VTGDAARLRQVLLNLAGNAIKFT+ GGVALI EPG Sbjct: 318 ELLAPRAQGKQLEIAAYLDERLPTWVTGDAARLRQVLLNLAGNAIKFTSKGGVALIAEPG 377 Query: 378 IWPNEISFLVRDTGIGIAPEAQQRIFREFEQADDRIARSYGGTGLGLSISDRIVKRMGGR 437 IWPNEISF VRDTGIGIA +AQ+RIFREFEQADD +ARS+GGTGLGL+ISDRIVKRMGGR Sbjct: 378 IWPNEISFQVRDTGIGIAADAQERIFREFEQADDSVARSFGGTGLGLAISDRIVKRMGGR 437 Query: 438 ITLASTPGAGSTFEVSIPL 456 I L S PGAGSTFEVS+PL Sbjct: 438 IALQSQPGAGSTFEVSVPL 456 >ref|ZP_01045062.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] gb|EAQ37067.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A] Length = 752 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/457 (70%), Positives = 386/457 (84%), Gaps = 2/457 (0%) Query: 2 GRFFRIKLRLRRFVRRHSWVATIVRSFTIFSVAFGSAFGFISGALSQQSGYDPNAFAIGV 61 R F ++ RLR +R+H + +R+F FS+AFG A+GFI+G S+ + YDP+AFAIG+ Sbjct: 3 ARLFWMRARLRGLIRQHPRLNLALRTFVTFSIAFGGAYGFIAG--SRSAEYDPHAFAIGI 60 Query: 62 SFLFALACLWIVTLGIRLRLMRKRLRTIAMHNEAMADRNWELQEAEQRASTLFEAQDDLI 121 SFLFALAC+ + L +RLR MRK++R IA+HNEA+ADRNWEL+EAE+R+ LFE+Q DLI Sbjct: 61 SFLFALACVALAILSMRLRGMRKKMRKIALHNEALADRNWELKEAEERSRCLFESQGDLI 120 Query: 122 VLRDLDGLITYANDAYCELAQRPRSELIGSTATLKVLEQGDTALESNGTRVYDQKIEGPL 181 VLRD +G+IT NDAYC LAQR R++L+G L VLEQG++ +E+NGTRVYDQ++E L Sbjct: 121 VLRDGNGIITSVNDAYCILAQRSRADLLGIRFALPVLEQGESVIEANGTRVYDQRVETAL 180 Query: 182 GPRWIAWREGLVRNDAGAPAEMQSVGRDVTDRTESEHALAEARDQADAANRAKSRFLAMA 241 GPRWIAWRE L+R DA PAE+Q VGRDVTDRTE++ AL EARD A+AAN+AKSRFLAM Sbjct: 181 GPRWIAWREALMRIDANHPAELQCVGRDVTDRTEAKRALGEARDHANAANQAKSRFLAMT 240 Query: 242 SHEIRTPLNGIIGMSGLLMDTQLTPEQMTYVKAVKTSGDALLALIEELLDYSKIEAGKID 301 SHE RTPLNGIIGMSGLL++T LTPEQ TYVKAVK SGDALL+LIEELLDYS+IEAGKID Sbjct: 241 SHEFRTPLNGIIGMSGLLLETALTPEQTTYVKAVKASGDALLSLIEELLDYSRIEAGKID 300 Query: 302 LEHRAFALSGLIEDITELLAPRAQTKGIEIAAYVDERLPTQVTGDAARLRQVLLNLAGNA 361 LEHR F LS LIEDITELLAPRAQ + + IA+Y+DE LPT+V GDAARLRQVLLNLAGNA Sbjct: 301 LEHRPFILSDLIEDITELLAPRAQARQLAIASYIDETLPTEVIGDAARLRQVLLNLAGNA 360 Query: 362 IKFTATGGVALIVEPGIWPNEISFLVRDTGIGIAPEAQQRIFREFEQADDRIARSYGGTG 421 IKFT+TGGVALIV PG+ N+I F+VRDTGIGIAP+AQ RIFR+FEQAD +IAR+YGG+G Sbjct: 361 IKFTSTGGVALIVTPGVGRNDIRFMVRDTGIGIAPDAQARIFRDFEQADGQIARNYGGSG 420 Query: 422 LGLSISDRIVKRMGGRITLASTPGAGSTFEVSIPLVA 458 LGLSISDRIVKRMGG ITL S PG+GSTFEVS+PL A Sbjct: 421 LGLSISDRIVKRMGGHITLQSEPGSGSTFEVSVPLPA 457 >ref|ZP_08627853.1| two-component hybrid sensor and regulator [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09382.1| two-component hybrid sensor and regulator [Bradyrhizobiaceae bacterium SG-6C] Length = 757 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 330/458 (72%), Positives = 384/458 (83%), Gaps = 2/458 (0%) Query: 1 MGRFFRIKLRLRRFVRRHSWVATIVRSFTIFSVAFGSAFGFISGALSQQSGYDPNAFAIG 60 M R RI+ RLRRF RRH W++ +RS TIFS FG A+GFI+G S+ YDP+AFA+G Sbjct: 1 MLRALRIRSRLRRFARRHPWISVTIRSVTIFSATFGGAYGFITG--SRTEAYDPHAFALG 58 Query: 61 VSFLFALACLWIVTLGIRLRLMRKRLRTIAMHNEAMADRNWELQEAEQRASTLFEAQDDL 120 SFLFA+ACL + L +R+R +RK++R I +HNEA+ADRNWEL+ AE+ A +LFE+Q DL Sbjct: 59 ASFLFAVACLALAMLSMRMRWLRKKMRKIELHNEALADRNWELKSAEEHARSLFESQGDL 118 Query: 121 IVLRDLDGLITYANDAYCELAQRPRSELIGSTATLKVLEQGDTALESNGTRVYDQKIEGP 180 IVLRD DG++T NDAYC LA++PR LIG+ +L VLEQG A+E NGTR++DQKI+ P Sbjct: 119 IVLRDGDGIVTSVNDAYCALARKPREALIGTRFSLPVLEQGIVAIEPNGTRIHDQKIDSP 178 Query: 181 LGPRWIAWREGLVRNDAGAPAEMQSVGRDVTDRTESEHALAEARDQADAANRAKSRFLAM 240 LGPRWIAWREGL+R DA PA++Q VGRDVTDRT +E ALAEARD A+AANRAKS+FLAM Sbjct: 179 LGPRWIAWREGLIRGDAHQPADLQCVGRDVTDRTGTERALAEARDLANAANRAKSKFLAM 238 Query: 241 ASHEIRTPLNGIIGMSGLLMDTQLTPEQMTYVKAVKTSGDALLALIEELLDYSKIEAGKI 300 ASHEIRTPLNGIIGMS LL+DT LT EQ TY KAVKTSGDAL+ALI+ELLD+S+IEAGKI Sbjct: 239 ASHEIRTPLNGIIGMSNLLLDTSLTAEQKTYAKAVKTSGDALMALIDELLDFSRIEAGKI 298 Query: 301 DLEHRAFALSGLIEDITELLAPRAQTKGIEIAAYVDERLPTQVTGDAARLRQVLLNLAGN 360 DLE R FAL+ +IEDITELLAPRAQ + +EIA+YVDERLP QV GDAARLRQVLLNLAGN Sbjct: 299 DLEQRPFALAAMIEDITELLAPRAQARNLEIASYVDERLPRQVLGDAARLRQVLLNLAGN 358 Query: 361 AIKFTATGGVALIVEPGIWPNEISFLVRDTGIGIAPEAQQRIFREFEQADDRIARSYGGT 420 AIKFT +GGVALIVEPGIWP EISF+VRDTGIGIAPEAQQRIFREFEQA + AR+YGGT Sbjct: 359 AIKFTQSGGVALIVEPGIWPGEISFIVRDTGIGIAPEAQQRIFREFEQASEGTARNYGGT 418 Query: 421 GLGLSISDRIVKRMGGRITLASTPGAGSTFEVSIPLVA 458 GLGLSISDRIV+RMGG I L ST G G+TF SIPL A Sbjct: 419 GLGLSISDRIVRRMGGHIALESTEGHGATFAFSIPLAA 456