BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0074.p (196 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_07026401.1| Smr protein/MutS2 [Afipia sp. 1NLS2] >gi|2985... 238 3e-61 ref|YP_004106696.1| Smr protein/MutS2 [Rhodopseudomonas palustri... 228 3e-58 ref|YP_567558.1| Smr protein/MutS2 [Rhodopseudomonas palustris B... 228 4e-58 ref|YP_001202421.1| putative Smr protein/MutS2 C-terminal [Brady... 225 2e-57 ref|NP_945658.1| Smr protein/MutS2 [Rhodopseudomonas palustris C... 224 5e-57 >ref|ZP_07026401.1| Smr protein/MutS2 [Afipia sp. 1NLS2] gb|EFI53543.1| Smr protein/MutS2 [Afipia sp. 1NLS2] Length = 200 Score = 238 bits (607), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 133/203 (65%), Positives = 149/203 (73%), Gaps = 10/203 (4%) Query: 1 MKRPAPIPDLSAP-SRRKRALSEEERALWESVAKQVKPLRKRPVAAKAHAVASDPATHHA 59 MKR P PDLS P SRR+RAL EER LWE+V KQ+KPLR+ P K+ + A A Sbjct: 1 MKRSRP-PDLSPPPSRRRRALDSEERELWETVTKQIKPLRRPPKVEKSESSAQ--GEEDA 57 Query: 60 IAKPI---PVKPVAAVK---AAPAQRPHVPPLAPIGRRERAKLSRGRQEIDARLDLHGMT 113 + K + P P A+ K AP + PPLAP GRRER+ L+RGR+EI+ARLDLHGMT Sbjct: 58 VTKEVAGRPSGPAASPKQTTVAPRPKNSPPPLAPFGRRERSHLARGRKEIEARLDLHGMT 117 Query: 114 QLRAHRVLFTFLQRAHSDGLTFVLVITGKGKVGGLDSERGVLRRQVPEWLSLPEFRSLVV 173 Q RAHR L FL RA DGLTFVLVITGKG+ G LDSERGVLRRQVPEWL LPEFRSLVV Sbjct: 118 QARAHRALIAFLSRASEDGLTFVLVITGKGRSGALDSERGVLRRQVPEWLGLPEFRSLVV 177 Query: 174 GFEEAHIGHGGEGALYVRVRRAR 196 GFEEA IGHGG GALYVR+RRAR Sbjct: 178 GFEEASIGHGGAGALYVRLRRAR 200 >ref|YP_004106696.1| Smr protein/MutS2 [Rhodopseudomonas palustris DX-1] gb|ADU41963.1| Smr protein/MutS2 [Rhodopseudomonas palustris DX-1] Length = 192 Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 144/191 (75%), Gaps = 5/191 (2%) Query: 7 IPDLSAP-SRRKRALSEEERALWESVAKQVKPLRKRPVAAKAHAVASDPATHHAIAKPIP 65 IP L P SRRKR+L+E+ERALW+ VA+Q+KPLR RP KA +DP + KP P Sbjct: 5 IPPLDPPMSRRKRSLTEDERALWDGVARQIKPLRGRPRPIKAEI--ADPLSESPSIKPSP 62 Query: 66 VKPVAAVKAAPAQRPHVPPLAPIGRRERAKLSRGRQEIDARLDLHGMTQLRAHRVLFTFL 125 P +K A PPLA +GRRERA LSRGR++IDAR+DLHGMTQ RAH L FL Sbjct: 63 AAPPQPLKRAAKPSVAPPPLASLGRRERAHLSRGRKDIDARIDLHGMTQARAHHALLHFL 122 Query: 126 QRAHSDGLTFVLVITGKGKVGGLDSERGVLRRQVPEWLSLPEFRSLVVGFEEAHIGHGGE 185 QRA DGL FVLVITGKGK G D+ERGVLRRQVP+WL+LPEFR+ VVGF+EAHIGHGGE Sbjct: 123 QRASHDGLGFVLVITGKGKSG--DAERGVLRRQVPQWLALPEFRAYVVGFDEAHIGHGGE 180 Query: 186 GALYVRVRRAR 196 GALYVRVRRAR Sbjct: 181 GALYVRVRRAR 191 >ref|YP_567558.1| Smr protein/MutS2 [Rhodopseudomonas palustris BisB5] gb|ABE37657.1| Smr protein/MutS2 [Rhodopseudomonas palustris BisB5] Length = 198 Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 131/199 (65%), Positives = 144/199 (72%), Gaps = 5/199 (2%) Query: 1 MKRPAPIPDLSAPSRRKRALSEEERALWESVAKQVKPLRKRPVAAKAHAVASDPAT--HH 58 MKR P D A RRKR+LSEEERALW+SVAKQVKPLR RP + + PAT Sbjct: 1 MKRFVPSLDPPATPRRKRSLSEEERALWDSVAKQVKPLRGRPRLTRIDVATAPPATPAEK 60 Query: 59 AIAKPIPVKPVA-AVKAAPAQRPHVPPLAPIGRRERAKLSRGRQEIDARLDLHGMTQLRA 117 P +PV VK A P PPLA +GRRER+ LSRGR++IDAR+DLHGMTQ RA Sbjct: 61 PQTPPSSQQPVKRPVKLATPMSP--PPLASLGRRERSHLSRGRKDIDARIDLHGMTQSRA 118 Query: 118 HRVLFTFLQRAHSDGLTFVLVITGKGKVGGLDSERGVLRRQVPEWLSLPEFRSLVVGFEE 177 H L FLQRA DGL+FVLVITGKG G D ERGVLRRQVP WLSLPEFR+ VVGF+E Sbjct: 119 HHALLRFLQRASHDGLSFVLVITGKGSRLGGDPERGVLRRQVPLWLSLPEFRAYVVGFDE 178 Query: 178 AHIGHGGEGALYVRVRRAR 196 AHIGHGGEGALYVRVRRAR Sbjct: 179 AHIGHGGEGALYVRVRRAR 197 >ref|YP_001202421.1| putative Smr protein/MutS2 C-terminal [Bradyrhizobium sp. ORS 278] emb|CAL74171.1| Conserved hypothetical protein; putative Smr protein/MutS2 C-terminal [Bradyrhizobium sp. ORS 278] Length = 191 Score = 225 bits (574), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/184 (65%), Positives = 139/184 (75%), Gaps = 6/184 (3%) Query: 15 RRKRALSEEERALWESVAKQVKPLRKRPVAAKAH--AVASDPATHHAIAKPIPVKPVAAV 72 RRKR LSE+ERALWE+VA+QVKPLRK A+ H ++P + P +PVA+V Sbjct: 11 RRKRGLSEDERALWETVARQVKPLRKAQRPARPHPPMATAEPQADKPLTTP---RPVASV 67 Query: 73 KAAPAQRPHVPPLAPIGRRERAKLSRGRQEIDARLDLHGMTQLRAHRVLFTFLQRAHSDG 132 RP +PPL +GR+ER+KLSRGR EIDARLDLHGMTQ RAH+ L FL RA DG Sbjct: 68 VIPKPIRPAIPPLVSLGRKERSKLSRGRSEIDARLDLHGMTQSRAHQALHHFLHRAQHDG 127 Query: 133 LTFVLVITGKGKVGGLDSERGVLRRQVPEWLSLPEFRSLVVGFEEAHIGHGGEGALYVRV 192 LTFVL+ITGKG +G D ERGVLRRQVP WLSLPEFRSL+VGFEEAH+GHGG GALYVR+ Sbjct: 128 LTFVLIITGKGTIGA-DPERGVLRRQVPHWLSLPEFRSLIVGFEEAHVGHGGAGALYVRI 186 Query: 193 RRAR 196 RR R Sbjct: 187 RRPR 190 >ref|NP_945658.1| Smr protein/MutS2 [Rhodopseudomonas palustris CGA009] emb|CAE25749.1| possible DNA mismatch repair protein (MutS) [Rhodopseudomonas palustris CGA009] Length = 194 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 126/193 (65%), Positives = 144/193 (74%), Gaps = 7/193 (3%) Query: 7 IPDLSAP-SRRKRALSEEERALWESVAKQVKPLRKRPVAAKAHAVASDPATHHAIAKPIP 65 IP L P SRRKR+L+E+ERALW+ VA+Q+KPLR RP K +DP KP P Sbjct: 5 IPPLDPPMSRRKRSLTEDERALWDGVARQIKPLRGRPRLIKVEI--ADPQALVPAIKPAP 62 Query: 66 VKPVAAVK--AAPAQRPHVPPLAPIGRRERAKLSRGRQEIDARLDLHGMTQLRAHRVLFT 123 V +K A P+ PPLA +GRRERA LSRGR++IDAR+DLHGMTQ RAH L Sbjct: 63 VAQPQPLKRTAKPSLPTAPPPLATLGRRERAHLSRGRKDIDARIDLHGMTQARAHHALLY 122 Query: 124 FLQRAHSDGLTFVLVITGKGKVGGLDSERGVLRRQVPEWLSLPEFRSLVVGFEEAHIGHG 183 FLQRA DGL FVLVITGKGK G D+ERGVLRRQVP+WL+LPEFR+ VVGF+EAHIGHG Sbjct: 123 FLQRASHDGLGFVLVITGKGKSG--DTERGVLRRQVPQWLALPEFRAYVVGFDEAHIGHG 180 Query: 184 GEGALYVRVRRAR 196 GEGALYVRVRRAR Sbjct: 181 GEGALYVRVRRAR 193