BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0070.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizob... 408 e-112 ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhi... 400 e-110 ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhi... 391 e-107 ref|YP_779316.1| DNA polymerase III subunit epsilon [Rhodopseudo... 391 e-107 ref|YP_530191.1| DNA polymerase III subunit epsilon [Rhodopseudo... 385 e-105 >ref|NP_767280.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA 110] dbj|BAC45905.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA 110] Length = 239 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/233 (84%), Positives = 213/233 (91%), Gaps = 1/233 (0%) Query: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60 MREIVLDTETTGLDPLRGDRLVEIGCVE+FNRMPTGQTYHVYINPERDMPAEAFAVHGLS Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60 Query: 61 TEFLASKPLFNEVVDEFLAFIGDTPLVIHNASFDISFINAELDRIKRKAIPKDQLVDTLL 120 EFL++KP+F+EV D FL FIGD PLVIHNASFDISFINAELDRIKR AIP++QLVDTLL Sbjct: 61 AEFLSTKPVFHEVADAFLEFIGDAPLVIHNASFDISFINAELDRIKRAAIPREQLVDTLL 120 Query: 121 LARRKHPGVSNRLDDLCSRYQIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILASET 180 LARRKHPGVSNRLDDLCSRY IDNSRRTKHGALLDAELLAEVY+DL+GARQSQL+LASE Sbjct: 121 LARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLLLASEA 180 Query: 181 SDARAGGHSGDTPRRQRETPLLARVIDADREAHRAFIATLGDKPIWNDYLPPP 233 + R +GDTPRRQR TPL R+ DA+REAHRAFIATLGDK IWN++LP P Sbjct: 181 EEIRINA-AGDTPRRQRPTPLAPRISDAEREAHRAFIATLGDKAIWNEFLPAP 232 >ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1] gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1] Length = 232 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/230 (83%), Positives = 210/230 (91%), Gaps = 1/230 (0%) Query: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60 MREIVLDTETTGLD LRGDRLVEIGCVEI NRMPTGQ +H YINPERDMPAEAFAVHGLS Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPERDMPAEAFAVHGLS 60 Query: 61 TEFLASKPLFNEVVDEFLAFIGDTPLVIHNASFDISFINAELDRIKRKAIPKDQLVDTLL 120 +EFLA KPLF+E+V+EFL FIGD PLVIHNASFDI FINAELDR+KR AIP+++LVDTLL Sbjct: 61 SEFLADKPLFHEIVEEFLEFIGDAPLVIHNASFDIGFINAELDRVKRAAIPRERLVDTLL 120 Query: 121 LARRKHPGVSNRLDDLCSRYQIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILASET 180 LARRKHPGVSNRLDDLCSRY IDNSRRTKHGALLDAELLAEVY+DL+GARQSQLIL +T Sbjct: 121 LARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLILTQDT 180 Query: 181 SDARAGGHSGDTPRRQRETPLLARVIDADREAHRAFIATLGDKPIWNDYL 230 + R G +GDTPRRQRETPL ARV DA+REAHRAFIATLGDKPIW ++L Sbjct: 181 QEIRVGA-AGDTPRRQRETPLAARVTDAEREAHRAFIATLGDKPIWMEFL 229 >ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS 278] emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic proofreading function [Bradyrhizobium sp. ORS 278] Length = 232 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 188/230 (81%), Positives = 209/230 (90%), Gaps = 1/230 (0%) Query: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60 MREIVLDTETTGLD LRGDRLVEIGCVEI NRMPTGQ +H YINP+RDMPAEAFAVHGLS Sbjct: 1 MREIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQRDMPAEAFAVHGLS 60 Query: 61 TEFLASKPLFNEVVDEFLAFIGDTPLVIHNASFDISFINAELDRIKRKAIPKDQLVDTLL 120 TEFL+ KPLF+EVV++FLAFIGD PLVIHNASFDI FINAELDR+KR AIP+++LVDTLL Sbjct: 61 TEFLSDKPLFHEVVEDFLAFIGDAPLVIHNASFDIGFINAELDRVKRAAIPRERLVDTLL 120 Query: 121 LARRKHPGVSNRLDDLCSRYQIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILASET 180 LARRKHPGVSNRLDDLCSRY IDNSRRTKHGALLDAELLAEVY+DL+GARQSQLIL + Sbjct: 121 LARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQLILTQDA 180 Query: 181 SDARAGGHSGDTPRRQRETPLLARVIDADREAHRAFIATLGDKPIWNDYL 230 + R G++GDTPRRQR+ PL RV +A+REAHRAF+ATLGDKPIW D+L Sbjct: 181 QEIRI-GNAGDTPRRQRDVPLAPRVTEAEREAHRAFVATLGDKPIWMDFL 229 >ref|YP_779316.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris BisA53] gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisA53] Length = 229 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/230 (83%), Positives = 205/230 (89%), Gaps = 2/230 (0%) Query: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60 MREIVLDTETTGLDPLRGDRLVEIGCVEI NRMPTGQ YH YINPERDMPAEAFAVHGLS Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPERDMPAEAFAVHGLS 60 Query: 61 TEFLASKPLFNEVVDEFLAFIGDTPLVIHNASFDISFINAELDRIKRKAIPKDQLVDTLL 120 EFL++KPLF EV +EFLAFI D PLVIHNASFDI FINAEL R+ + IP+D+LVDTLL Sbjct: 61 AEFLSTKPLFAEVAEEFLAFIADAPLVIHNASFDIGFINAELARLSQPPIPRDRLVDTLL 120 Query: 121 LARRKHPGVSNRLDDLCSRYQIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILASET 180 LARRKHPGVSNRLDDLCSRY IDNSRRTKHGALLDAELLAEVY+DLIGARQSQLILA ET Sbjct: 121 LARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLIGARQSQLILA-ET 179 Query: 181 SDARAGGHSGDTPRRQRETPLLARVIDADREAHRAFIATLGDKPIWNDYL 230 RA + D PRRQRET L+ARV DADREAHRAF+ATLGDKPIWN+YL Sbjct: 180 GSERA-SRAADAPRRQRETALVARVSDADREAHRAFVATLGDKPIWNEYL 228 >ref|YP_530191.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris BisB18] gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris BisB18] Length = 231 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 192/230 (83%), Positives = 204/230 (88%), Gaps = 2/230 (0%) Query: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTYHVYINPERDMPAEAFAVHGLS 60 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQT+H YINPERDMP EAFAVHGLS Sbjct: 1 MREIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVHGLS 60 Query: 61 TEFLASKPLFNEVVDEFLAFIGDTPLVIHNASFDISFINAELDRIKRKAIPKDQLVDTLL 120 EFL++KPLF EVVDEFL FI + PLVIHNASFDI FINAEL +I R IP+D+LVDTLL Sbjct: 61 AEFLSTKPLFAEVVDEFLEFIAEAPLVIHNASFDIGFINAELGKIARPPIPRDRLVDTLL 120 Query: 121 LARRKHPGVSNRLDDLCSRYQIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILASET 180 LARRKHPGVSNRLDDLCSRY IDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA E Sbjct: 121 LARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILA-EA 179 Query: 181 SDARAGGHSGDTPRRQRETPLLARVIDADREAHRAFIATLGDKPIWNDYL 230 + +R+ GD PRRQRETPL ARV DADR AHR F+ATLGDKPIWN+Y Sbjct: 180 APSRS-NRPGDAPRRQRETPLAARVTDADRIAHREFVATLGDKPIWNEYF 228