BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0192.0063.p (441 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001202411.1| tRNA modification GTPase TrmE [Bradyrhizobiu... 599 e-169 ref|ZP_08627876.1| GTPase and tRNA-U34 5-formylation enzyme TrmE... 597 e-168 ref|YP_001236367.1| tRNA modification GTPase TrmE [Bradyrhizobiu... 596 e-168 ref|NP_767274.1| tRNA modification GTPase TrmE [Bradyrhizobium j... 593 e-167 ref|YP_779322.1| tRNA modification GTPase TrmE [Rhodopseudomonas... 588 e-166 >ref|YP_001202411.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. ORS 278] sp|A4YJT5.1|MNME_BRASO RecName: Full=tRNA modification GTPase MnmE emb|CAL74161.1| putative tRNA modification GTPase (trmE) [Bradyrhizobium sp. ORS 278] Length = 444 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 316/444 (71%), Positives = 362/444 (81%), Gaps = 3/444 (0%) Query: 1 MHPRDQTIFALSSGRPPSAIAIIRLSGPMAQSVIVGLAGKTPMPRLATRALLHDSNHQPI 60 MHP DQTIFALSSGR PSAIAI+RLSGP A + + LAGK P PRL TRALL D +PI Sbjct: 1 MHPHDQTIFALSSGRLPSAIAIVRLSGPHAGAALQMLAGKMPAPRLVTRALLRDPQGEPI 60 Query: 61 DDAVVLWFPGPASATGEDVAEFHVHGGRAVLSAMFDAIAAFDNVRPAEPGEFTRRAFENG 120 DDAVVLWFP PASATGE+V E H+HG RAV++ +F ++ +RPAEPGEFTRRAFENG Sbjct: 61 DDAVVLWFPAPASATGENVVELHIHGSRAVIATLFGVLSETPELRPAEPGEFTRRAFENG 120 Query: 121 KLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDRARDWRERIIAASALIEAGIDFSDE 180 KLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGD+ R WRE+II A+ALIEAGIDFSDE Sbjct: 121 KLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKVRRWREQIIEAAALIEAGIDFSDE 180 Query: 181 GDVPAELITPALEKIRALHDEIKQVLAGQGQSERLRDGLVVAIAGPPNVGKSTLINQLAK 240 GDVPAEL+ PAL +++ L EI+ VLA QG++ERLRDGL V IAGPPN GKSTL+NQLA+ Sbjct: 181 GDVPAELLAPALSRVQQLLLEIEAVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLAR 240 Query: 241 REVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAAEADL 300 REVAIVSP AGTTRD+IEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRAR RAA ADL Sbjct: 241 REVAIVSPQAGTTRDLIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARDRAAHADL 300 Query: 301 VLWLADSGDAKAGHGGATPTWLVRNKIDL---VRTTMGEGGSYPEFRISAARGDGLSELI 357 VLWL++ A+ G TP WLVR K DL R T + + F ISA G G+ L+ Sbjct: 301 VLWLSEHDGAEVERQGETPLWLVRTKTDLDGAERATRPDTKASRTFGISARSGAGMGALL 360 Query: 358 AALVGFAQDYFGTSEGGLISRTRQRGLLQETVESLQRSIDVVGQGEELAAEELRRAAYSL 417 ALVGFA+++FG++E GLI+R RQR L++T ++LQRS+D V GEEL AEELR AA +L Sbjct: 361 DALVGFARNFFGSTESGLITRERQRQSLRQTADALQRSLDTVDLGEELVAEELRIAALAL 420 Query: 418 GRLLGRVDVEDILDVIFREFCVGK 441 GRLLGRVDVED+LDVIFREFC+GK Sbjct: 421 GRLLGRVDVEDLLDVIFREFCIGK 444 >ref|ZP_08627876.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09405.1| GTPase and tRNA-U34 5-formylation enzyme TrmE [Bradyrhizobiaceae bacterium SG-6C] Length = 444 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 309/448 (68%), Positives = 352/448 (78%), Gaps = 11/448 (2%) Query: 1 MHPRDQTIFALSSGRPPSAIAIIRLSGPMAQSVIVGLAGKTPMPRLATRALLHDSNHQPI 60 M DQTIFALSSGR PSAIAI+R+SGP A+ + L GK P PRLA L D + I Sbjct: 1 MQSSDQTIFALSSGRAPSAIAILRVSGPQARMAVERLCGKLPSPRLARFTTLRDLDGSAI 60 Query: 61 DDAVVLWFPGPASATGEDVAEFHVHGGRAVLSAMFDAIAAFDNVRPAEPGEFTRRAFENG 120 D++V LWFPGP SAT EDVAEFHVHGGRAV++AM DA+ A + +RPAEPGEFTRRAFENG Sbjct: 61 DESVTLWFPGPHSATAEDVAEFHVHGGRAVIAAMLDALGAINGLRPAEPGEFTRRAFENG 120 Query: 121 KLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDRARDWRERIIAASALIEAGIDFSDE 180 KLDLTEAEGLDDLIHADTDRQRRQALR LKGLLG +A WR++II ASALIEAGIDFSDE Sbjct: 121 KLDLTEAEGLDDLIHADTDRQRRQALRHLKGLLGAKAETWRQQIIEASALIEAGIDFSDE 180 Query: 181 GDVPAELITPALEKIRALHDEIKQVLAGQGQSERLRDGLVVAIAGPPNVGKSTLINQLAK 240 GDV EL+ PAL+KI AL EI++ L QSERLR+GL VAIAGPPN GKSTL+N+LA+ Sbjct: 181 GDVSEELVAPALKKIAALKSEIEETLISSAQSERLREGLTVAIAGPPNAGKSTLLNRLAR 240 Query: 241 REVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAAEADL 300 RE AIVSPHAGTTRDVIEV LDLDGYPVTVIDTAG+RET DPVEQEGVRRAR RA +DL Sbjct: 241 REAAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGVRETHDPVEQEGVRRARERARTSDL 300 Query: 301 VLWLADSGD----AKAGHGGATPTWLVRNKIDLVRTTMGEGGSY---PEFRISAARGDGL 353 VLWL D D + A P W+VRNK+DL G+G + +F ISA+RGDG+ Sbjct: 301 VLWLVDVSDKGAPSPATEDDHAPVWIVRNKVDLA----GDGNANAARAQFDISASRGDGV 356 Query: 354 SELIAALVGFAQDYFGTSEGGLISRTRQRGLLQETVESLQRSIDVVGQGEELAAEELRRA 413 SELIAALV +AQDYFG+ E L+SR R R LL+ETVE+L R+ +G+EL AEELR A Sbjct: 357 SELIAALVSYAQDYFGSGEMALVSRARHRTLLRETVEALDRAGRSADKGDELLAEELRIA 416 Query: 414 AYSLGRLLGRVDVEDILDVIFREFCVGK 441 +SLGRL GRVDVEDILDVIFREFC+GK Sbjct: 417 IHSLGRLTGRVDVEDILDVIFREFCIGK 444 >ref|YP_001236367.1| tRNA modification GTPase TrmE [Bradyrhizobium sp. BTAi1] sp|A5E8G7.1|MNME_BRASB RecName: Full=tRNA modification GTPase MnmE gb|ABQ32461.1| tRNA modification GTPase trmE [Bradyrhizobium sp. BTAi1] Length = 445 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 321/445 (72%), Positives = 359/445 (80%), Gaps = 4/445 (0%) Query: 1 MHPRDQTIFALSSGRPPSAIAIIRLSGPMAQSVIVGLAGKTPMPRLATRALLHDSNHQPI 60 MHP DQTIFALSSGRPPSAIAI+RLSG A + L GK P PRLATRALL D PI Sbjct: 1 MHPHDQTIFALSSGRPPSAIAIVRLSGVGAGPALQTLTGKLPPPRLATRALLRDDRGDPI 60 Query: 61 DDAVVLWFPGPASATGEDVAEFHVHGGRAVLSAMFDAIAAFDNVRPAEPGEFTRRAFENG 120 DDAVVLWFPGPASATGEDVAE HVHG RAV++ + ++A +R A+ GEFTRRAFENG Sbjct: 61 DDAVVLWFPGPASATGEDVAELHVHGSRAVITTLVSLLSAMPQMRAADRGEFTRRAFENG 120 Query: 121 KLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDRARDWRERIIAASALIEAGIDFSDE 180 K+DLTEAEGLDDLIHADTDRQRRQALRQLKGLLGD+AR WR++II A+ALIEAGIDF+DE Sbjct: 121 KIDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDKARSWRDQIIQAAALIEAGIDFADE 180 Query: 181 GDVPAELITPALEKIRALHDEIKQVLAGQGQSERLRDGLVVAIAGPPNVGKSTLINQLAK 240 GDVPAELI PAL IR L EI++VLA QG++ERLRDGL V IAGPPN GKSTL+NQLA+ Sbjct: 181 GDVPAELIAPALAWIRQLLAEIEEVLAAQGRAERLRDGLTVVIAGPPNAGKSTLMNQLAR 240 Query: 241 REVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAAEADL 300 REVAIVSPHAGTTRD+IEV LDLDGYPVTVIDTAGIR+TDDPVEQEGVRRAR RAA+ADL Sbjct: 241 REVAIVSPHAGTTRDLIEVALDLDGYPVTVIDTAGIRQTDDPVEQEGVRRARDRAAQADL 300 Query: 301 VLWLADSGDAKAGHGGATPTWLVRNKIDLVRTTMGEGGSY----PEFRISAARGDGLSEL 356 VLWL + A+ P W VRNKIDL+ T S P F ISA G G+S+L Sbjct: 301 VLWLTEDDQAELERQTDGPIWFVRNKIDLMITEQSGAISVSPESPVFAISARSGAGMSDL 360 Query: 357 IAALVGFAQDYFGTSEGGLISRTRQRGLLQETVESLQRSIDVVGQGEELAAEELRRAAYS 416 + ALVGFA+DYFG +E GLI+R RQR L ET +L+RSI V GEELAAEELR AA + Sbjct: 361 LEALVGFARDYFGATEHGLITRERQRTWLSETAAALRRSIAAVDLGEELAAEELRIAALA 420 Query: 417 LGRLLGRVDVEDILDVIFREFCVGK 441 LGRLLGRVDVED+LDVIFREFC+GK Sbjct: 421 LGRLLGRVDVEDLLDVIFREFCIGK 445 >ref|NP_767274.1| tRNA modification GTPase TrmE [Bradyrhizobium japonicum USDA 110] sp|Q89WP4.1|MNME_BRAJA RecName: Full=tRNA modification GTPase MnmE dbj|BAC45899.1| tRNA modification GTPase [Bradyrhizobium japonicum USDA 110] Length = 452 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 334/456 (73%), Positives = 379/456 (83%), Gaps = 19/456 (4%) Query: 1 MHPRDQTIFALSSGRPPSAIAIIRLSGPMAQSVIVGLAGKTPMPRLATRALLHDSNHQPI 60 MHPRDQTIFALSSGRPPSAIA++R+SG A V+ LAGK P PR A+R LL D QPI Sbjct: 1 MHPRDQTIFALSSGRPPSAIAVVRVSGAQAGLVLTTLAGKLPAPRQASRRLLRDGTGQPI 60 Query: 61 DDAVVLWFPGPASATGEDVAEFHVHGGRAVLSAMFDAIAAFDNVRPAEPGEFTRRAFENG 120 DDAVVLWFPGPASATGEDVAEFH HGGRAVL+A+ AI+ N+R AEPGEFTRRAFENG Sbjct: 61 DDAVVLWFPGPASATGEDVAEFHAHGGRAVLAALLAAISVIPNMRAAEPGEFTRRAFENG 120 Query: 121 KLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDRARDWRERIIAASALIEAGIDFSDE 180 KLDLTEAEGLDDLIHADTDRQRRQALRQL+GLLG+RARDWRERII ASALIEAGIDFSDE Sbjct: 121 KLDLTEAEGLDDLIHADTDRQRRQALRQLQGLLGNRARDWRERIIEASALIEAGIDFSDE 180 Query: 181 GDVPAELITPALEKIRALHDEIKQVLAGQGQSERLRDGLVVAIAGPPNVGKSTLINQLAK 240 GDVPAEL PA++ I+ALH EI +VLA QG SERLRDG+VVAIAG PNVGKSTL+NQLA+ Sbjct: 181 GDVPAELRAPAVKAIKALHVEITEVLAAQGHSERLRDGMVVAIAGEPNVGKSTLMNQLAR 240 Query: 241 REVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAAEADL 300 R+VAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARA +ADL Sbjct: 241 RDVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAEDADL 300 Query: 301 VLWLAD---------------SGDAKAGHGGATPTWLVRNKIDLVRTTMGEGGSYPEFRI 345 VLWL + SGD GG+ W+VRNKIDL G+ G EF I Sbjct: 301 VLWLVEGEQAADPASMRSLWTSGDGSHPSGGS--VWIVRNKIDL--GEFGDEGPQGEFGI 356 Query: 346 SAARGDGLSELIAALVGFAQDYFGTSEGGLISRTRQRGLLQETVESLQRSIDVVGQGEEL 405 SA+RGDG+ EL+ ALV F+ ++FGTSEG L++R RQR LL++ +SL+RS+++VG+GEEL Sbjct: 357 SASRGDGIRELVDALVKFSAEFFGTSEGALVTRARQRDLLRQASDSLRRSLELVGEGEEL 416 Query: 406 AAEELRRAAYSLGRLLGRVDVEDILDVIFREFCVGK 441 AAEELR AAY+LGRLLGRVDVED+L IF++FC+GK Sbjct: 417 AAEELRSAAYALGRLLGRVDVEDVLGAIFQKFCIGK 452 >ref|YP_779322.1| tRNA modification GTPase TrmE [Rhodopseudomonas palustris BisA53] gb|ABJ04342.1| tRNA modification GTPase trmE [Rhodopseudomonas palustris BisA53] Length = 482 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 311/455 (68%), Positives = 363/455 (79%), Gaps = 16/455 (3%) Query: 1 MHPRDQTIFALSSGRPPSAIAIIRLSGPMAQSVIVGLAGKTPMPRLATRALLHDSNHQPI 60 MH DQTIFALSSGRPPSAIAI+R+SG ++ LAG+ P PR+A RAL+ D + +PI Sbjct: 30 MHASDQTIFALSSGRPPSAIAIVRVSGSRGAKIVEALAGRLPTPRMAMRALIKDRDGEPI 89 Query: 61 DDAVVLWFPGPASATGEDVAEFHVHGGRAVLSAMFDAIAAFDNVRPAEPGEFTRRAFENG 120 DDAVVLWFPGPASATGEDVAEFH+HGGRAVL+A+ +++F+NVR AEPGEFTRRAFE+G Sbjct: 90 DDAVVLWFPGPASATGEDVAEFHIHGGRAVLAALMATLSSFENVRAAEPGEFTRRAFEHG 149 Query: 121 KLDLTEAEGLDDLIHADTDRQRRQALRQLKGLLGDRARDWRERIIAASALIEAGIDFSDE 180 K+DLTEAEGLDDLIHADTDRQRRQALRQL GLLGDRARDWR +II A ALIEAGIDF+DE Sbjct: 150 KIDLTEAEGLDDLIHADTDRQRRQALRQLNGLLGDRARDWRAQIIEAQALIEAGIDFADE 209 Query: 181 GDVPAELITPALEKIRALHDEIKQVLAGQGQSERLRDGLVVAIAGPPNVGKSTLINQLAK 240 GDVP +L+ PAL KI AL EI+ +LA QG+SERLRDGLVVAI GPPNVGKSTL+NQLA+ Sbjct: 210 GDVPDDLLAPALAKIEALAGEIEALLAAQGRSERLRDGLVVAIVGPPNVGKSTLMNQLAR 269 Query: 241 REVAIVSPHAGTTRDVIEVQLDLDGYPVTVIDTAGIRETDDPVEQEGVRRARARAAEADL 300 REVAIVSPHAGTTRDVIEV LDLDGYPVTVIDTAGIR++DDPVEQEGVRRA+ARAAEADL Sbjct: 270 REVAIVSPHAGTTRDVIEVHLDLDGYPVTVIDTAGIRDSDDPVEQEGVRRAQARAAEADL 329 Query: 301 VLWLA--DSGDAKAGHGGATPTWLVRNKIDL------------VRTTMGEGGSYPEFRIS 346 VLWL D A A P WLVRNK+DL + +G+ P F IS Sbjct: 330 VLWLLADDQVAAPAAIESDAPVWLVRNKVDLAGAATGVKPAKNLEANLGQNVPQPSFAIS 389 Query: 347 AARGDGLSELIAALVGFAQDYFGTSEGGLISRTRQRGLLQETVESLQRSIDVVGQGEELA 406 A RGDG+++L+ AL GFA ++FG E G I+R R R LL++ + LQ S G+ EEL Sbjct: 390 AKRGDGIADLVGALGGFAAEFFGAGEAGAITRQRHRDLLRDALVMLQCSKR--GRAEELV 447 Query: 407 AEELRRAAYSLGRLLGRVDVEDILDVIFREFCVGK 441 AE+LR A+ SLGRLLG+VDVED+LD +FR+FC+GK Sbjct: 448 AEDLRSASRSLGRLLGQVDVEDVLDALFRDFCIGK 482